View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1731_low_25 (Length: 353)
Name: NF1731_low_25
Description: NF1731
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1731_low_25 |
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Alignment Details
Target: chr5 (Bit Score: 193; Significance: 1e-105; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 122 - 339
Target Start/End: Complemental strand, 40504408 - 40504191
Alignment:
| Q |
122 |
ggtgctgtagcttctcaaaaacatgggggaaattcttaaagctggtggtgccagctactcatcagttgttaagacaacaattatgtatggactcctctac |
221 |
Q |
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| T |
40504408 |
ggtgctgtagcttctcaaaaacatgggggaaattcttaaagctggtggtgccagctactcatcagttgttaagacaacaattatgtatggactcctctac |
40504309 |
T |
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| Q |
222 |
cttctatagttggtttttactgagtccttgcgagaatgcaagataactattttttgaacannnnnnncatgcaggttggctgacttgaaggattttaaga |
321 |
Q |
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| T |
40504308 |
cttctatagttggtttttactaagtccttgcgagaatgcaagataactattttttgaacatttttttcatgcaggttggctgacttgaaggattttaaga |
40504209 |
T |
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| Q |
322 |
aagtcaatgagatatatg |
339 |
Q |
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| T |
40504208 |
aagtcaatgagatatatg |
40504191 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 15 - 65
Target Start/End: Complemental strand, 40504503 - 40504453
Alignment:
| Q |
15 |
tattgaacttgaatattttttatcccaatacctagtgtgatgaactcgtgc |
65 |
Q |
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| T |
40504503 |
tattgaacttgaatattttttatcccaatacctagtgtgatgaactcgtgc |
40504453 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 133 - 210
Target Start/End: Complemental strand, 20482491 - 20482414
Alignment:
| Q |
133 |
ttctcaaaaacatgggggaaattcttaaagctggtggtgccagctactcatcagttgttaagacaacaattatgtatg |
210 |
Q |
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| T |
20482491 |
ttctcaaaaacatgggggagatcctgaaatctgggggtgccagttatgcatcagttgttaagacaacaattttgtatg |
20482414 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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