View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1731_low_26 (Length: 352)
Name: NF1731_low_26
Description: NF1731
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1731_low_26 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 288; Significance: 1e-161; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 1 - 352
Target Start/End: Original strand, 46458852 - 46459203
Alignment:
| Q |
1 |
gtatacaggtagtattttgagaaattgcatgaataatagtctctgaccaattgattctgtgttgatgcaagtgagcccaaaccattctgttgccaagatg |
100 |
Q |
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| T |
46458852 |
gtatacaggtagtattttgagaaattgcatgaataatagtctcggaccaattgattctgtgttgatgcaagtgagcccaaaccattctgttgccaagatg |
46458951 |
T |
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| Q |
101 |
gcagtcgtgactgcatagttggtgtagaggatgaaccagaagatgatcccattgtgtttgcagttccagagctattggcaagacctgaacatgatcctac |
200 |
Q |
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| T |
46458952 |
gcagtcgtgactgcatagttggtgtagaggatgaaccagaagatgatcccattgtgtttgcagttccagagctattggcaagacctgaacatgatcctac |
46459051 |
T |
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| Q |
201 |
cttttgtttttgcttccgttcgacttgacttttggatgcctaaaattcatacacaccctttaacaaccctagacatgcattaccgctcctaacttttgct |
300 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||| |||||| | |||| || |||||||||||||||| |||||||| | ||||| |
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| T |
46459052 |
tttttgtttttgcttccgttcgacttgacttttggaagcctaaaattcacacacactcattaaaaaacctagacatgcattacagctcctaaatattgct |
46459151 |
T |
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| Q |
301 |
cacaggaaccttaatggaatacaattttaggggtggaacacttatttcaact |
352 |
Q |
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|||||||| ||||||||||||||||| ||| ||||||| ||||| ||||||| |
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| T |
46459152 |
cacaggaaacttaatggaatacaattatagtggtggaaaacttaattcaact |
46459203 |
T |
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