View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1731_low_29 (Length: 336)
Name: NF1731_low_29
Description: NF1731
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1731_low_29 |
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| [»] scaffold1051 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 304; Significance: 1e-171; HSPs: 7)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 1 - 320
Target Start/End: Original strand, 30120108 - 30120427
Alignment:
| Q |
1 |
aacattcatgttggtctcatgattatgaaccacccaatgaatagccccattcaagaacaacccaactttgttggaaggacgattagtattaattaccata |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30120108 |
aacattcatgttggtctcatgattatgaaccacccaatgaatagccccattcaagaacaacccaactttgttggaaggacgattagtattaattaccata |
30120207 |
T |
|
| Q |
101 |
taaggtaaatgaaaaccaacctcaacttgtttccacctattagctctcaatgagaaaatctccaaggtaatcaaactagatacccgatcatagtcattat |
200 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
30120208 |
taaggtaaatgaaaaccaacctcaacttgtttccacttattagttctcaatgagaaaatctccaaggtaatcaaaccagatacccgatcatagtcattat |
30120307 |
T |
|
| Q |
201 |
agcatttataggaccctaaaactaccaagtaatcatcagttgacggttcgtatgcaaagccatacaaaaaccttaaaatatcgcgattgagaatattaag |
300 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
30120308 |
agcatttataggaccctaaaactaccaagtaatcatcagttgacggttcgtatgcaaagccatacaaaaaccttaaaatattgcgattgagaatattaag |
30120407 |
T |
|
| Q |
301 |
cttgattccaatagtcatag |
320 |
Q |
| |
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|||||||||||||||||||| |
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|
| T |
30120408 |
cttgattccaatagtcatag |
30120427 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 100 - 270
Target Start/End: Original strand, 30131210 - 30131380
Alignment:
| Q |
100 |
ataaggtaaatgaaaaccaacctcaacttgtttccacctattagctctcaatgagaaaatctccaaggtaatcaaactagatacccgatcatagtcatta |
199 |
Q |
| |
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|||||| |||||| || |||||| || |||||| || ||| |||||||||||||||||||| ||||| || ||||||||| |||||||||| ||| | |
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| T |
30131210 |
ataaggcaaatgagaagcaacctgaatttgttttcagctaatagctctcaatgagaaaatccccaagtcaagtgaactagatatccgatcatagccatca |
30131309 |
T |
|
| Q |
200 |
tagcatttataggaccctaaaactaccaagtaatcatcagttgacggttcgtatgcaaagccatacaaaaa |
270 |
Q |
| |
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| ||||| |||||||||||||||||||||||||||||||||||| ||||| ||||| |||||||||||||| |
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| T |
30131310 |
tcgcattcataggaccctaaaactaccaagtaatcatcagttgatggttcatatgccaagccatacaaaaa |
30131380 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 128 - 246
Target Start/End: Original strand, 28180503 - 28180624
Alignment:
| Q |
128 |
tgtttccacctattagctctcaatgagaaaatctccaaggtaatcaaactagatacccgatcatagtcattata---gcatttataggaccctaaaacta |
224 |
Q |
| |
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||||||||| ||||||||||||||||||||||||| || ||| ||||||||||| ||||| || ||| || ||||||||||||||||||||||| |
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| T |
28180503 |
tgtttccacttattagctctcaatgagaaaatctctaattcaattgaactagataccggatcaaagccatcatcaccgcatttataggaccctaaaacta |
28180602 |
T |
|
| Q |
225 |
ccaagtaatcatcagttgacgg |
246 |
Q |
| |
|
|||||||||||||||||||||| |
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|
| T |
28180603 |
ccaagtaatcatcagttgacgg |
28180624 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 9 - 67
Target Start/End: Original strand, 30125162 - 30125220
Alignment:
| Q |
9 |
tgttggtctcatgattatgaaccacccaatgaatagccccattcaagaacaacccaact |
67 |
Q |
| |
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|||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||| |
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|
| T |
30125162 |
tgttggtctcatgattatgaaccagccaatgaatagtcccattcaagaacaacccaact |
30125220 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 14 - 63
Target Start/End: Original strand, 30131121 - 30131170
Alignment:
| Q |
14 |
gtctcatgattatgaaccacccaatgaatagccccattcaagaacaaccc |
63 |
Q |
| |
|
||||||| ||||| ||||| |||||||||||||||||||||||||||||| |
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|
| T |
30131121 |
gtctcataattataaaccagccaatgaatagccccattcaagaacaaccc |
30131170 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 28180376 - 28180436
Alignment:
| Q |
1 |
aacattcatgttggtctcatgattatgaaccacccaatgaatagccccattcaagaacaac |
61 |
Q |
| |
|
||||||| | |||||||||||||||||||||| ||||||||||||||| || |||| |||| |
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|
| T |
28180376 |
aacattcctcttggtctcatgattatgaaccaaccaatgaatagccccgtttaagagcaac |
28180436 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 202 - 271
Target Start/End: Original strand, 30123949 - 30124019
Alignment:
| Q |
202 |
gcatttataggaccctaaaactaccaagtaatcatcagttgac-ggttcgtatgcaaagccatacaaaaac |
271 |
Q |
| |
|
|||||| |||||||| ||||||||||||||||||| ||| || |||||||| |||||| ||||||||||| |
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|
| T |
30123949 |
gcatttgtaggaccccaaaactaccaagtaatcatatgttaacgggttcgtaagcaaaggcatacaaaaac |
30124019 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 203; Significance: 1e-111; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 70 - 320
Target Start/End: Complemental strand, 29261459 - 29261209
Alignment:
| Q |
70 |
gttggaaggacgattagtattaattaccatataaggtaaatgaaaaccaacctcaacttgtttccacctattagctctcaatgagaaaatctccaaggta |
169 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| || |||||||||||||||||||||| ||||||| | |
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|
| T |
29261459 |
gttggaaggacgattagtattaattaccatataaggtaaatgaaaaccaacatcaacttgtttctacttattagctctcaatgagaaaatatccaaggga |
29261360 |
T |
|
| Q |
170 |
atcaaactagatacccgatcatagtcattatagcatttataggaccctaaaactaccaagtaatcatcagttgacggttcgtatgcaaagccatacaaaa |
269 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||| |||||||||||||| |||| |
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| T |
29261359 |
atcaatctagatacccgatcatagtcattatagcatttataggaccttaaaactacgaagtaatcatcagttgacggttcatatgcaaagccatagaaaa |
29261260 |
T |
|
| Q |
270 |
accttaaaatatcgcgattgagaatattaagcttgattccaatagtcatag |
320 |
Q |
| |
|
|||||||||||| | |||||||||||||||||||||||||||||||||||| |
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|
| T |
29261259 |
accttaaaatattgtgattgagaatattaagcttgattccaatagtcatag |
29261209 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1051 (Bit Score: 44; Significance: 5e-16; HSPs: 1)
Name: scaffold1051
Description:
Target: scaffold1051; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 101 - 254
Target Start/End: Original strand, 1971 - 2121
Alignment:
| Q |
101 |
taaggtaaatgaaaaccaacctcaacttgtttccacctattagctctcaatgagaaaatctccaaggtaatcaaactagatacccgatcatagtcattat |
200 |
Q |
| |
|
||||| ||| || |||||| ||||| |||||||||| ||||||||||||||||||||||||||||| | | |||| |||| || | ||| || || |
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|
| T |
1971 |
taaggcaaaggagaaccaaactcaatttgtttccacttattagctctcaatgagaaaatctccaagtcagttaaaccagattcc---aaaaagttatcat |
2067 |
T |
|
| Q |
201 |
agcatttataggaccctaaaactaccaagtaatcatcagttgacggttcgtatg |
254 |
Q |
| |
|
| ||| ||| |||| |||||||||||||||||||||||||||||||| |||| |
|
|
| T |
2068 |
cgtattggtagtaccccaaaactaccaagtaatcatcagttgacggttcatatg |
2121 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 100 - 241
Target Start/End: Complemental strand, 21430244 - 21430104
Alignment:
| Q |
100 |
ataaggtaaatgaaaaccaacctcaacttgtttccacctattagctctcaatgagaaaatctccaaggtaatcaaactagatacccgatcatagtcatta |
199 |
Q |
| |
|
|||||| |||||| || ||||||||| || |||||| |||||||||||||||||||||||| ||| ||| ||||||||||| ||| ||| |||| |
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|
| T |
21430244 |
ataaggcaaatgagaagcaacctcaattt-tttccattgattagctctcaatgagaaaatctctaagtcaattgaactagataccgactcagagtgatta |
21430146 |
T |
|
| Q |
200 |
tagcatttataggaccctaaaactaccaagtaatcatcagtt |
241 |
Q |
| |
|
| | ||| |||||| | |||||||||||||||||||||||| |
|
|
| T |
21430145 |
ttgaattcgtaggactcgaaaactaccaagtaatcatcagtt |
21430104 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 98 - 266
Target Start/End: Complemental strand, 21426551 - 21426387
Alignment:
| Q |
98 |
atataaggtaaatgaaaaccaacctcaacttgtttccacctattagctctcaatgagaaaatctccaaggtaatcaaactagatacccgatcatagtcat |
197 |
Q |
| |
|
|||||||| |||||| || ||||||||| ||||||||| ||| |||||||||||||||||||| |||| ||| |||||| ||| | || ||| || |
|
|
| T |
21426551 |
atataaggcaaatgagaagcaacctcaatttgtttccatttatgagctctcaatgagaaaatcttcaagtcaattgaactaggtacaggctccaagtgat |
21426452 |
T |
|
| Q |
198 |
tatagcatttataggaccctaaaactaccaagtaatcatcagttgacggttcgtatgcaaagccataca |
266 |
Q |
| |
|
|| ||| |||||||| |||||||||||||||||| |||||||||||||||| ||| |||||| |
|
|
| T |
21426451 |
catcaactttgtaggaccccaaaactaccaagtaatca----ttgacggttcgtatgccaaggcataca |
21426387 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 10 - 63
Target Start/End: Complemental strand, 21426639 - 21426586
Alignment:
| Q |
10 |
gttggtctcatgattatgaaccacccaatgaatagccccattcaagaacaaccc |
63 |
Q |
| |
|
|||||||||| ||||||||||| |||||||||||||||||| |||||| |||| |
|
|
| T |
21426639 |
gttggtctcagaattatgaaccagccaatgaatagccccatttaagaacgaccc |
21426586 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 139 - 184
Target Start/End: Original strand, 43165016 - 43165061
Alignment:
| Q |
139 |
attagctctcaatgagaaaatctccaaggtaatcaaactagatacc |
184 |
Q |
| |
|
|||||||||||||||||||||||||||| |||| ||||||||||| |
|
|
| T |
43165016 |
attagctctcaatgagaaaatctccaagtcaatcgaactagatacc |
43165061 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 138 - 166
Target Start/End: Original strand, 45366194 - 45366222
Alignment:
| Q |
138 |
tattagctctcaatgagaaaatctccaag |
166 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
45366194 |
tattagctctcaatgagaaaatctccaag |
45366222 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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