View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1731_low_3 (Length: 541)
Name: NF1731_low_3
Description: NF1731
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1731_low_3 |
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Alignment Details
Target: chr2 (Bit Score: 150; Significance: 5e-79; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 150; E-Value: 5e-79
Query Start/End: Original strand, 366 - 530
Target Start/End: Complemental strand, 43171598 - 43171433
Alignment:
| Q |
366 |
cgtgtatatatatctcattgttccaa-taccagaaacctatcacatcacatccatataatttctcaatagtttcctcctgtatttaagcaatggcaacca |
464 |
Q |
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| T |
43171598 |
cgtgtatatatatctcgttgttccaaataccagaaacctatcacatcacatccatataatttctcaatagtttcctcctgtatttaagcaatggcaacca |
43171499 |
T |
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| Q |
465 |
attctcttactttggtgaccattttcatctttgccatggctctttgtaccactttaccttgtgatg |
530 |
Q |
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| T |
43171498 |
attctcttactttggtgaccattttcatctttgccatggctctttgtaccactttaccttttgatg |
43171433 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 132; E-Value: 3e-68
Query Start/End: Original strand, 18 - 157
Target Start/End: Complemental strand, 43172178 - 43172039
Alignment:
| Q |
18 |
attcattttaatcttcataagttctgtgagtcaagttcttctacatattaaattctttcaccctttattttattttacaatgagaagcttcccaactgaa |
117 |
Q |
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| T |
43172178 |
attcattttaatcttcatgagttctgtgagtcaagttcttctacatattaaattctttcaccctttattttattttacaatgagaagcttcccagctgaa |
43172079 |
T |
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| Q |
118 |
ttttctgaattgcgtttgtacttcttctttgccttatttt |
157 |
Q |
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| T |
43172078 |
ttttctgaattgcgtttgtacttcttctttgccttatttt |
43172039 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 115; E-Value: 4e-58
Query Start/End: Original strand, 154 - 368
Target Start/End: Complemental strand, 43171829 - 43171626
Alignment:
| Q |
154 |
ttttttctactaagcaaagcattctttgtgttccttaatatttgtttgnnnnnnnatgaaaaacgaaaagtaaatgaaagtaaggaaacattaactatta |
253 |
Q |
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| T |
43171829 |
ttttttctactaagcaaagcattctttgtgttccttaatatttgtttgtttttttatgaaaaacgaaaagtaaatgagagtaaggaaacattaactatta |
43171730 |
T |
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| Q |
254 |
aagggatatgtaaattacaatagtaccctcacaattaagtagttgttaatatgaaagatttagggttttggtaaaaagcaagtgggagagtaggtttgct |
353 |
Q |
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| T |
43171729 |
aagggatatgtaaattacaatagtaccctcacaat--agta---------ccctcacaattagggttttggtagaaagcaagtgggagagtaggtttgct |
43171641 |
T |
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| Q |
354 |
aacttatttcttcgt |
368 |
Q |
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| T |
43171640 |
aacttatttcttcgt |
43171626 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 471 - 530
Target Start/End: Complemental strand, 43161353 - 43161294
Alignment:
| Q |
471 |
ttactttggtgaccattttcatctttgccatggctctttgtaccactttaccttgtgatg |
530 |
Q |
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| T |
43161353 |
ttactttggtgactattttcatctttgctatgactctttctcccactttaccatgtgatg |
43161294 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 258 - 331
Target Start/End: Complemental strand, 36260685 - 36260613
Alignment:
| Q |
258 |
gatatgtaaattacaatagtaccctcacaattaagtagttgttaatatgaaagatttagggttttggtaaaaag |
331 |
Q |
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| T |
36260685 |
gatatgtaaagtgcaatagtaccc-catatttaagtagttgttaagaagaaagatttagagttttggtaaaaag |
36260613 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 261 - 330
Target Start/End: Complemental strand, 6026973 - 6026904
Alignment:
| Q |
261 |
atgtaaattacaatagtaccctcacaattaagtagttgttaatatgaaagatttagggttttggtaaaaa |
330 |
Q |
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| T |
6026973 |
atgtaaattacactactaccctcatattttagtagttgttaaaatgaaagattagagcttttggtaaaaa |
6026904 |
T |
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