View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1731_low_31 (Length: 334)

Name: NF1731_low_31
Description: NF1731
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1731_low_31
NF1731_low_31
[»] chr6 (3 HSPs)
chr6 (1-263)||(26452093-26452355)
chr6 (90-262)||(26446500-26446671)
chr6 (180-264)||(13800024-13800107)
[»] chr5 (4 HSPs)
chr5 (1-262)||(21006135-21006396)
chr5 (90-264)||(21011757-21011931)
chr5 (119-205)||(30253637-30253724)
chr5 (179-223)||(8284283-8284327)
[»] chr8 (6 HSPs)
chr8 (1-262)||(43583374-43583635)
chr8 (1-246)||(24744405-24744650)
chr8 (90-263)||(43579674-43579847)
chr8 (90-262)||(24749981-24750152)
chr8 (179-245)||(9190481-9190546)
chr8 (158-207)||(41522706-41522755)
[»] chr1 (5 HSPs)
chr1 (53-240)||(32960126-32960314)
chr1 (135-241)||(48332731-48332836)
chr1 (103-247)||(24501948-24502091)
chr1 (116-191)||(43190474-43190549)
chr1 (166-241)||(32959861-32959935)
[»] chr7 (3 HSPs)
chr7 (96-241)||(7338158-7338302)
chr7 (179-264)||(47537079-47537163)
chr7 (179-213)||(47928469-47928503)
[»] chr3 (2 HSPs)
chr3 (125-240)||(48866158-48866272)
chr3 (116-153)||(2224975-2225012)
[»] chr2 (1 HSPs)
chr2 (158-208)||(7983713-7983763)


Alignment Details
Target: chr6 (Bit Score: 160; Significance: 3e-85; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 160; E-Value: 3e-85
Query Start/End: Original strand, 1 - 263
Target Start/End: Original strand, 26452093 - 26452355
Alignment:
Q  1 ggaggaatgagacaaataaaaccctaatttttgacatttgatccccttttatattgctgacagtgatttgccatgtcctcaagtgattggccaagctgga 100  Q
    ||||||||||||  ||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||  ||||    
T  26452093 ggaggaatgagatcaataaaaccctaatttttgacatttcatccccttttatattgctgatagtgatttgccatgtcctcaagtgattggccaacgtgga 26452192  T
Q  101 gtgccacatgttcagagttaacg-ttttttgaaaaaagttaacagaaaggaccaactaagtaaacggaagagtacttacaggaccaaattgacacattta 199  Q
      ||||| ||  || |||||||| ||||||  || || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26452193 cagccacctgaacatagttaacgtttttttttaacaaattaacagaaaggaccaactaagtaaacggaagagtacttacaggaccaaattgacacattta 26452292  T
Q  200 atagttaagagactgaagtgagaaggaaaaaataagttaaggaacctgtgtatatattaagcct 263  Q
    | ||||||| |||||||||||||| ||||||||||||||||| ||||| ||||  |||||||||    
T  26452293 aaagttaagggactgaagtgagaa-gaaaaaataagttaagggacctgcgtatgcattaagcct 26452355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 109; E-Value: 8e-55
Query Start/End: Original strand, 90 - 262
Target Start/End: Complemental strand, 26446671 - 26446500
Alignment:
Q  90 gccaagctggagtgccacatgttcagagttaacgttttttgaaaaaagttaacagaaaggaccaactaagtaaacggaagagtacttacaggaccaaatt 189  Q
    |||||||||||  ||||| ||| |||||||||||||||||  |||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||    
T  26446671 gccaagctggacagccacctgtacagagttaacgtttttttcaaaaagttaatagaaaggaccaactaagtaaacagaagagtacttacaggaccaaatt 26446572  T
Q  190 gacacatttaatagttaagagactgaagtgagaaggaaaaaataagttaaggaacctgtgtatatattaagcc 262  Q
    ||||||||||| |||||||||||||||||||||| ||||||||||||||||| || || ||||  ||||||||    
T  26446571 gacacatttaaaagttaagagactgaagtgagaa-gaaaaaataagttaagggacatgcgtatgcattaagcc 26446500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 180 - 264
Target Start/End: Complemental strand, 13800107 - 13800024
Alignment:
Q  180 ggaccaaattgacacatttaatagttaagagactgaagtgagaaggaaaaaataagttaaggaacctgtgtatatattaagcctt 264  Q
    |||||||||||||||| |||||||||||| |||  || ||||||  | |||||||||||||| ||||  | || |||||||||||    
T  13800107 ggaccaaattgacacaattaatagttaagggaccaaactgagaa-aataaaataagttaagggacctagggatgtattaagcctt 13800024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 155; Significance: 3e-82; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 155; E-Value: 3e-82
Query Start/End: Original strand, 1 - 262
Target Start/End: Complemental strand, 21006396 - 21006135
Alignment:
Q  1 ggaggaatgagacaaataaaaccctaatttttgacatttgatccccttttatattgctgacagtgatttgccatgtcctcaagtgattggccaagctgga 100  Q
    ||||||||||||  ||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||  ||||    
T  21006396 ggaggaatgagatcaataaaaccctaatttttgacatttcatccccttttatattgctgatagtgatttgccatgtcctcaagtgattggccaacgtgga 21006297  T
Q  101 gtgccacatgttcagagttaacgtt-ttttgaaaaaagttaacagaaaggaccaactaagtaaacggaagagtacttacaggaccaaattgacacattta 199  Q
      ||||| ||| ||||||||||||| ||||  ||||||||||| ||||||| |||||  ||||||||||||| |||||||||||||||||||||||||||    
T  21006296 cagccacttgtgcagagttaacgttttttttcaaaaagttaactgaaaggatcaactgggtaaacggaagagaacttacaggaccaaattgacacattta 21006197  T
Q  200 atagttaagagactgaagtgagaaggaaaaaataagttaaggaacctgtgtatatattaagcc 262  Q
    | ||||||| |||| ||||||||| ||||||||||||||||| ||||| |||| |||||||||    
T  21006196 aaagttaagggactaaagtgagaa-gaaaaaataagttaagggacctgcgtatgtattaagcc 21006135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 90 - 264
Target Start/End: Original strand, 21011757 - 21011931
Alignment:
Q  90 gccaagctggagtgccacatgttcagagttaacgttttttga-aaaaagttaacagaaaggaccaactaagtaaacggaagagtacttacaggaccaaat 188  Q
    ||||||||||| ||||||||||||||||||||||||||||   ||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||    
T  21011757 gccaagctggactgccacatgttcagagttaacgttttttttcaaaaagttaacagaaaggaccaactaagtaaacagaagagtactgacaggaccaaat 21011856  T
Q  189 tgacacatttaatagttaagagactgaagtgagaaggaaaaaataagttaaggaacctgtgtatatattaagcctt 264  Q
    ||| |||||||||||||||| |||||||||||||| ||||||||||||||||| ||||| |||| |||||||||||    
T  21011857 tgaaacatttaatagttaagggactgaagtgagaa-gaaaaaataagttaagggacctgcgtatgtattaagcctt 21011931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 119 - 205
Target Start/End: Complemental strand, 30253724 - 30253637
Alignment:
Q  119 taacgttttttgaaaaaag-ttaacagaaaggaccaactaagtaaacggaagagtacttacaggaccaaattgacacatttaatagtt 205  Q
    ||||||||||||||||||  |||||| || |||||||||||||||| ||| ||  |||||   ||||||||||||||| |||||||||    
T  30253724 taacgttttttgaaaaaaacttaacaaaatggaccaactaagtaaatggaggaagacttatgagaccaaattgacacacttaatagtt 30253637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 179 - 223
Target Start/End: Original strand, 8284283 - 8284327
Alignment:
Q  179 aggaccaaattgacacatttaatagttaagagactgaagtgagaa 223  Q
    ||||||||||| | ||||||||||||||||||||| || ||||||    
T  8284283 aggaccaaattaaaacatttaatagttaagagactaaactgagaa 8284327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 151; Significance: 7e-80; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 151; E-Value: 7e-80
Query Start/End: Original strand, 1 - 262
Target Start/End: Original strand, 43583374 - 43583635
Alignment:
Q  1 ggaggaatgagacaaataaaaccctaatttttgacatttgatccccttttatattgctgacagtgatttgccatgtcctcaagtgattggccaagctgga 100  Q
    ||||||||||||  ||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||  ||||    
T  43583374 ggaggaatgagatcaataaaaccctaatttttgacatttcatccccttttatattgctgatagtgatttgccatgtcctcaagtgattggccaacgtgga 43583473  T
Q  101 gtgccacatgttcagagttaacg-ttttttgaaaaaagttaacagaaaggaccaactaagtaaacggaagagtacttacaggaccaaattgacacattta 199  Q
      ||||| | | ||||||||||| ||||||  ||||||||||||||||||| |||||  ||||||||||||| |||||||||||||||||||||||||||    
T  43583474 cagccacttatgcagagttaacgttttttttcaaaaagttaacagaaaggatcaactgggtaaacggaagagaacttacaggaccaaattgacacattta 43583573  T
Q  200 atagttaagagactgaagtgagaaggaaaaaataagttaaggaacctgtgtatatattaagcc 262  Q
    | ||||||| |||||||||||||| |||||||||| |||||| || || |||| |||||||||    
T  43583574 aaagttaagggactgaagtgagaa-gaaaaaataaattaagggacatgcgtatgtattaagcc 43583635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 1 - 246
Target Start/End: Complemental strand, 24744650 - 24744405
Alignment:
Q  1 ggaggaatgagacaaataaaaccctaatttttgacatttgatccccttttatattgctgacagtgatttgccatgtcctcaagtgattggccaagctgga 100  Q
    ||||||||| ||  ||| ||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||  ||||    
T  24744650 ggaggaatgtgatcaatgaaaccctaatttttgacatttcatccccttttatattgctgatagtgatttgccatgtcctcaagtgattggccaacgtgga 24744551  T
Q  101 gtgccacatgttcagagttaacgtt-ttttgaaaaaagttaacagaaaggaccaactaagtaaacggaagagtacttacaggaccaaattgacacattta 199  Q
      ||||| ||| || |||||||||| ||||  |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||    
T  24744550 cagccacctgtacatagttaacgttttttttcaaaaagttaacagaaaggaccaactaagtaaacggaggagtacttacaggaccaaattgacacaatta 24744451  T
Q  200 atagttaagagactgaagtgagaaggaaaaaataagttaaggaacct 246  Q
    | |||||||  ||||||||||||| ||||||||||||||||| ||||    
T  24744450 aaagttaaggaactgaagtgagaa-gaaaaaataagttaagggacct 24744405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 119; E-Value: 9e-61
Query Start/End: Original strand, 90 - 263
Target Start/End: Complemental strand, 43579847 - 43579674
Alignment:
Q  90 gccaagctggagtgccacatgttcagagttaacgttttttga-aaaaagttaacagaaaggaccaactaagtaaacggaagagtacttacaggaccaaat 188  Q
    ||||||||||| ||||||||||||||||||||||||||||   |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43579847 gccaagctggactgccacatgttcagagttaacgttttttttcaaaaagttaacagaaaggaccaactaagtaaacggaagagtacttacaggaccaaat 43579748  T
Q  189 tgacacatttaatagttaagagactgaagtgagaaggaaaaaataagttaaggaacctgtgtatatattaagcct 263  Q
    ||| |||||||||||||||| |||||||||||||| ||||||||||||||||  || || |||| ||||||||||    
T  43579747 tgaaacatttaatagttaagggactgaagtgagaa-gaaaaaataagttaagagacttgcgtatgtattaagcct 43579674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 90 - 262
Target Start/End: Original strand, 24749981 - 24750152
Alignment:
Q  90 gccaagctggagtgccacatgttcagagttaacgttttttgaaaaaagttaacagaaaggaccaactaagtaaacggaagagtacttacaggaccaaatt 189  Q
    |||| ||||||  ||||| ||| ||||||||||||| |||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24749981 gccatgctggacagccacctgtacagagttaacgttgttttcaaaaagttaacagaaaggaccaactaagtaaacggaagagtacttacaggaccaaatt 24750080  T
Q  190 gacacatttaatagttaagagactgaagtgagaaggaaaaaataagttaaggaacctgtgtatatattaagcc 262  Q
    ||||||||||| ||||||| |||||||||||||| ||||||||||||||||| || || ||||  ||||||||    
T  24750081 gacacatttaaaagttaagggactgaagtgagaa-gaaaaaataagttaagggacttgcgtatgcattaagcc 24750152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 179 - 245
Target Start/End: Original strand, 9190481 - 9190546
Alignment:
Q  179 aggaccaaattgacacatttaatagttaagagactgaagtgagaaggaaaaaataagttaaggaacc 245  Q
    ||||||||||||| |||||||||||||||| |||| || ||||||    ||||||||||||||||||    
T  9190481 aggaccaaattgaaacatttaatagttaagggactaaactgagaa-attaaaataagttaaggaacc 9190546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 158 - 207
Target Start/End: Original strand, 41522706 - 41522755
Alignment:
Q  158 agtaaacggaagagtacttacaggaccaaattgacacatttaatagttaa 207  Q
    ||||||||| |||  ||||| ||||||||||||||||| |||||||||||    
T  41522706 agtaaacggcagaagacttataggaccaaattgacacacttaatagttaa 41522755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 84; Significance: 7e-40; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 53 - 240
Target Start/End: Original strand, 32960126 - 32960314
Alignment:
Q  53 attgctgacagtgatttgccatgtcctcaagtgattggccaagctggagtgccacatgttcagagttaacgtttttt----gaaaaaagttaacagaaag 148  Q
    |||||||| |||||||| ||||||||||||||||||||||||  |||||  |||||||| ||||||||| |||||||     ||||||||||| ||||||    
T  32960126 attgctgagagtgattttccatgtcctcaagtgattggccaacatggagaaccacatgtgcagagttaaagtttttttttaaaaaaaagttaatagaaag 32960225  T
Q  149 gaccaactaagtaaacggaagagtacttacaggaccaaattgacacatttaatagttaagagactgaagtgagaaggaaaaaataagttaag 240  Q
    ||  ||||  ||||||| |||||||  || ||||||||||||||||||||||||||||||  ||||||||||||| ||||||||||||||||    
T  32960226 gattaactgggtaaacgaaagagta--tagaggaccaaattgacacatttaatagttaaggaactgaagtgagaa-gaaaaaataagttaag 32960314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 135 - 241
Target Start/End: Complemental strand, 48332836 - 48332731
Alignment:
Q  135 aagttaacagaaaggaccaactaagtaaacggaagagtacttacaggaccaaattgacacatttaatagttaagagactgaagtgagaaggaaaaaataa 234  Q
    ||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||| |||||||||||||||| |||||||||||||| ||||||||||    
T  48332836 aagttaacagaaaggaccaactaagtaaacggaagagtatttataggaccaaattgaaacatttaatagttaagggactgaagtgagaa-gaaaaaataa 48332738  T
Q  235 gttaagg 241  Q
    |||||||    
T  48332737 gttaagg 48332731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 103 - 247
Target Start/End: Original strand, 24501948 - 24502091
Alignment:
Q  103 gccacatgttcagagttaacgttttttgaaaaaagttaacagaaaggaccaactaagtaaacggaagagtacttacaggaccaaattgacacatttaata 202  Q
    ||||| ||| |||| ||||||||||||  ||||||||||||||||||| |||||  ||||||||||||| |||||||||||||||||||||||||||| |    
T  24501948 gccacctgtacagacttaacgtttttttcaaaaagttaacagaaaggatcaactgggtaaacggaagagaacttacaggaccaaattgacacatttaaaa 24502047  T
Q  203 gttaagagactgaagtgagaaggaaaaaataagttaaggaacctg 247  Q
    |||||| || ||||||||||| |||||||||| |||||| |||||    
T  24502048 gttaagggaatgaagtgagaa-gaaaaaataaattaagggacctg 24502091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 116 - 191
Target Start/End: Original strand, 43190474 - 43190549
Alignment:
Q  116 agttaacgttttttgaaaaaagttaacagaaaggaccaactaagtaaacggaagagtacttacaggaccaaattga 191  Q
    |||||||||||||||| |||| ||||||||||||||||  |   ||||||||||  ||||||||||||||||||||    
T  43190474 agttaacgttttttgacaaaaattaacagaaaggaccagttggataaacggaagtatacttacaggaccaaattga 43190549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 166 - 241
Target Start/End: Complemental strand, 32959935 - 32959861
Alignment:
Q  166 gaagagtacttacaggaccaaattgacacatttaatagttaagagactgaagtgagaaggaaaaaataagttaagg 241  Q
    |||||||| ||||| ||||| ||| | |||||||||||||||||||||||  |||| | |||||||||||||||||    
T  32959935 gaagagtatttacatgaccagattaatacatttaatagttaagagactgagatgag-atgaaaaaataagttaagg 32959861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 82; Significance: 1e-38; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 96 - 241
Target Start/End: Complemental strand, 7338302 - 7338158
Alignment:
Q  96 ctggagtgccacatgttcagagttaacgttttttgaaaaaagttaacagaaaggaccaactaagtaaacggaagagtacttacaggaccaaattgacaca 195  Q
    |||||||||||||| | || |||||||||||||||||||||||||||| |||||| ||||   | ||||||||||| ||||||||||| |||||||||||    
T  7338302 ctggagtgccacatatacatagttaacgttttttgaaaaaagttaacaaaaaggatcaaccgggcaaacggaagagaacttacaggactaaattgacaca 7338203  T
Q  196 tttaatagttaagagactgaagtgagaaggaaaaaataagttaagg 241  Q
    |||||| |||||| || ||||||||||| |||||||||||||||||    
T  7338202 tttaattgttaagggattgaagtgagaa-gaaaaaataagttaagg 7338158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 179 - 264
Target Start/End: Original strand, 47537079 - 47537163
Alignment:
Q  179 aggaccaaattgacacatttaatagttaagagactgaagtgagaaggaaaaaataagttaaggaacctgtgtatatattaagcctt 264  Q
    ||||||||||||| |||||||||||||||| |||  || |||||| |  |||||||||||||| ||| | | ||||||||||||||    
T  47537079 aggaccaaattgaaacatttaatagttaagggaccaaactgagaa-gttaaaataagttaagggaccgggggatatattaagcctt 47537163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 179 - 213
Target Start/End: Original strand, 47928469 - 47928503
Alignment:
Q  179 aggaccaaattgacacatttaatagttaagagact 213  Q
    ||||||||||||| |||||||||||||||||||||    
T  47928469 aggaccaaattgaaacatttaatagttaagagact 47928503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 125 - 240
Target Start/End: Complemental strand, 48866272 - 48866158
Alignment:
Q  125 tttttgaaaaaagttaacagaaaggaccaactaagtaaacggaagagtacttacaggaccaaattgacacatttaatagttaagagactgaagtgagaag 224  Q
    ||||||||||||  |||| || |||||||  | |||||||||||||  ||||| ||||||||||||||||| ||||||||| || |||| || ||||||     
T  48866272 tttttgaaaaaaactaacggagaggaccatattagtaaacggaagaagacttataggaccaaattgacacacttaatagttcagggactaaactgagaa- 48866174  T
Q  225 gaaaaaataagttaag 240  Q
     | |||||||||||||    
T  48866173 aataaaataagttaag 48866158  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 116 - 153
Target Start/End: Complemental strand, 2225012 - 2224975
Alignment:
Q  116 agttaacgttttttgaaaaaagttaacagaaaggacca 153  Q
    |||||||||||||||| |||| ||||||||||||||||    
T  2225012 agttaacgttttttgataaaaattaacagaaaggacca 2224975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 158 - 208
Target Start/End: Original strand, 7983713 - 7983763
Alignment:
Q  158 agtaaacggaagagtacttacaggaccaaattgacacatttaatagttaag 208  Q
    ||||||||| |||  ||||| ||||||||||||||||| ||||||||||||    
T  7983713 agtaaacggtagaagacttataggaccaaattgacacacttaatagttaag 7983763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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