View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1731_low_35 (Length: 311)
Name: NF1731_low_35
Description: NF1731
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1731_low_35 |
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Alignment Details
Target: chr3 (Bit Score: 291; Significance: 1e-163; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 1 - 295
Target Start/End: Original strand, 53491469 - 53491763
Alignment:
| Q |
1 |
catattcacagttgctttacaagtgtcatagattccttgagtatcaacatctttgtaaggcactggaatcacaatgacttgagtcgatgctactttagga |
100 |
Q |
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| T |
53491469 |
catattcacagttgctttacaagtgtcatagattccttgagtatcaacatctttgtaaggcactggaatcacaatgacttgagttgatgctactttagga |
53491568 |
T |
|
| Q |
101 |
ggtagcaccaatcccttgtcatcaccatgaaccatcaccatcgctccaatctgttaaaaaagcggacaaaaatataaatgcaatcgtacataagaggaat |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53491569 |
ggtagcaccaatcccttgtcatcaccatgaaccatcaccatcgctccaatctgttaaaaaagcggacaaaaatataaatgcaatcgtacataagaggaat |
53491668 |
T |
|
| Q |
201 |
ccttccattcatgtatactctagacattaaaagcttacagttcgagtagaatagccccatgaattctgccaaaccattgctttctctcccttcat |
295 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53491669 |
ccttccattcatgtatactctagacattaaaagcttacagttcgagtagaatagccccatgaattctgccaaaccattgctttctctcccttcat |
53491763 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 1 - 293
Target Start/End: Original strand, 53499062 - 53499354
Alignment:
| Q |
1 |
catattcacagttgctttacaagtgtcatagattccttgagtatcaacatctttgtaaggcactggaatcacaatgacttgagtcgatgctactttagga |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
53499062 |
catattcacagttgctttacaagtgtcatagattccttgagtatcaacatctttgtaaggcactggaatcacaatgacttgagttgatgctactttagga |
53499161 |
T |
|
| Q |
101 |
ggtagcaccaatcccttgtcatcaccatgaaccatcaccatcgctccaatctgttaaaaaagcggacaaaaatataaatgcaatcgtacataagaggaat |
200 |
Q |
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| T |
53499162 |
ggtagcaccaatcccttgtcatcgccatgaaccatcaccattgctccaatctgttaaataagcggactaaaatataaatgcaatcgtacataaaaggagt |
53499261 |
T |
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| Q |
201 |
ccttccattcatgtatactctagacattaaaagcttacagttcgagtagaatagccccatgaattctgccaaaccattgctttctctcccttc |
293 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
53499262 |
tcttccattcatgtatactctagacattaaaagcttacagttcgagtagaatagccccatgagttctgccaaaccattgctttctctcccttc |
53499354 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 104; E-Value: 7e-52
Query Start/End: Original strand, 13 - 156
Target Start/End: Original strand, 16070160 - 16070303
Alignment:
| Q |
13 |
tgctttacaagtgtcatagattccttgagtatcaacatctttgtaaggcactggaatcacaatgacttgagtcgatgctactttaggaggtagcaccaat |
112 |
Q |
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||||||||||| ||||| |||||||| | |||||| | ||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||| |
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| T |
16070160 |
tgctttacaagcgtcattgattccttcacaatcaacgtttttgtaaggcactggaatcacaatgacttgagttgatgctactttaggcggtagcaccaat |
16070259 |
T |
|
| Q |
113 |
cccttgtcatcaccatgaaccatcaccatcgctccaatctgtta |
156 |
Q |
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| T |
16070260 |
cccttgtcatcaccatgaaccatcaccatcactccaatctgtta |
16070303 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 221 - 293
Target Start/End: Original strand, 16070390 - 16070462
Alignment:
| Q |
221 |
tagacattaaaagcttacagttcgagtagaatagccccatgaattctgccaaaccattgctttctctcccttc |
293 |
Q |
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|||||||| |||||||||||||||||||||| | |||||||| |||||||||||||||| ||||||| ||||| |
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| T |
16070390 |
tagacattgaaagcttacagttcgagtagaaaacccccatgagttctgccaaaccattgttttctctaccttc |
16070462 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 109; Significance: 8e-55; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 109; E-Value: 8e-55
Query Start/End: Original strand, 1 - 293
Target Start/End: Complemental strand, 45355303 - 45355013
Alignment:
| Q |
1 |
catattcacagttgctttacaagtgtcatagattccttgagtatcaacatctttgtaaggcactggaatcacaatgacttgagtcgatgctactttagga |
100 |
Q |
| |
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||||||||||||||| |||| | ||| ||||||||||||||||| |||||||||||||||| |||||||||||||||||| |||||||||||||| |
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| T |
45355303 |
catattcacagttgcggtacaggcatcaaagattccttgagtatcagcatctttgtaaggcacaggaatcacaatgacttgaactgatgctactttaggt |
45355204 |
T |
|
| Q |
101 |
ggtagcaccaatcccttgtcatcaccatgaaccatcaccatcgctccaatctgttaaaaaagcggacaaaaatataaatgcaatcgtacataagaggaat |
200 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||| | |||||||||| |||||||| | | ||| | ||||||||| || | ||| ||| |
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| T |
45355203 |
ggcagcaccaatcccttgtcatcaccatgaaccatcaccatcaccccaatctgttgaaaaagcgcaaagaaacgttaatgcaatcata-tttagaccaat |
45355105 |
T |
|
| Q |
201 |
ccttccattcatgtatactctagacattaaaagcttacagttcgagtagaatagccccatgaattctgccaaaccattgctttctctcccttc |
293 |
Q |
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| | || |||||||| | ||| ||| ||||||||||||||||||| |||| |||| || |||||||| ||||||||||||||||||||| |
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| T |
45355104 |
attgcaatgcatgtatattgaagaaatt-aaagcttacagttcgagtactataggcccacgagttctgccagaccattgctttctctcccttc |
45355013 |
T |
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