View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1731_low_38 (Length: 297)
Name: NF1731_low_38
Description: NF1731
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1731_low_38 |
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Alignment Details
Target: chr5 (Bit Score: 162; Significance: 2e-86; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 36 - 269
Target Start/End: Complemental strand, 19901294 - 19901062
Alignment:
| Q |
36 |
tatggagattctgcactgatgataattgttatgaactgatgctatttttaattgttttaaatagttctgcactgaaataattgttcactgatgctagttg |
135 |
Q |
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| T |
19901294 |
tatggaggttctgcactgatgctaattgttaagaacttatgctatttctaattgttttaa-tagttctgcactgaaataattgttcactgatgctagttg |
19901196 |
T |
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| Q |
136 |
ttgggaactagttatacactaatgttattattatggaggttctacactgatgctaattgttaagcacatatgtagcagtctccaagtgtatgtttaattg |
235 |
Q |
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| T |
19901195 |
ttggaaactagttatacactgatgttattactatggaggttctgcactcatgttaattgttaagcacatatgtagcaggctgcaagtatatgtttaattg |
19901096 |
T |
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| Q |
236 |
ttaagcacatatgaacactaccatttcaattctc |
269 |
Q |
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| T |
19901095 |
ttaagcacatatgagtactaccatttcaattctc |
19901062 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 131; E-Value: 5e-68
Query Start/End: Original strand, 17 - 199
Target Start/End: Complemental strand, 19901443 - 19901262
Alignment:
| Q |
17 |
taaagtagttgaactatgatatggagattctgcactgatgataattgttatgaactgatgctatttttaattgttttaaatagttctgcactgaaataat |
116 |
Q |
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| T |
19901443 |
taaagtagttgaactatgatatggaggttctgcacttatgctaattgttaagaactgatgctatttttaattgttttaa-taattttgaactgaaataat |
19901345 |
T |
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| Q |
117 |
tgttcactgatgctagttgttgggaactagttatacactaatgttattattatggaggttctacactgatgctaattgttaag |
199 |
Q |
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| T |
19901344 |
tgttcactgatgctagttgttgggaactagttatacactgatgctatttttatggaggttctgcactgatgctaattgttaag |
19901262 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 75; Significance: 1e-34; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 17 - 131
Target Start/End: Original strand, 3582188 - 3582300
Alignment:
| Q |
17 |
taaagtagttgaactatgatatggagattctgcactgatgataattgttatgaactgatgctatttttaattgttttaaatagttctgcactgaaataat |
116 |
Q |
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| T |
3582188 |
taaagtagttgaactatgatatggaggttcagcattgatgctaattgtta-gaactaatgctatttttaattgtttt-aatagttctgcactaaaataat |
3582285 |
T |
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| Q |
117 |
tgttcactgatgcta |
131 |
Q |
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| T |
3582286 |
tgttcactgatgcta |
3582300 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 152 - 206
Target Start/End: Original strand, 3582290 - 3582344
Alignment:
| Q |
152 |
cactaatgttattattatggaggttctacactgatgctaattgttaagcacatat |
206 |
Q |
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| T |
3582290 |
cactgatgctatttttatggaggttatatactgatgctaattgttaagcacatat |
3582344 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 17 - 56
Target Start/End: Complemental strand, 34800951 - 34800912
Alignment:
| Q |
17 |
taaagtagttgaactatgatatggagattctgcactgatg |
56 |
Q |
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| T |
34800951 |
taaagtagttgaactatgatatggaggttctgcaatgatg |
34800912 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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