View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1731_low_39 (Length: 294)

Name: NF1731_low_39
Description: NF1731
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1731_low_39
NF1731_low_39
[»] chr7 (22 HSPs)
chr7 (159-294)||(22805224-22805359)
chr7 (16-159)||(22805419-22805562)
chr7 (16-159)||(22815137-22815280)
chr7 (34-159)||(22889402-22889527)
chr7 (34-159)||(22831141-22831266)
chr7 (16-159)||(22898373-22898516)
chr7 (39-159)||(22876026-22876146)
chr7 (34-159)||(22840162-22840287)
chr7 (34-159)||(22885704-22885827)
chr7 (34-159)||(22894054-22894179)
chr7 (34-154)||(22913783-22913903)
chr7 (56-157)||(22842264-22842365)
chr7 (34-159)||(22880674-22880799)
chr7 (37-159)||(22809754-22809876)
chr7 (66-159)||(22858572-22858665)
chr7 (156-294)||(22830946-22831084)
chr7 (156-294)||(22889207-22889345)
chr7 (235-294)||(22880506-22880565)
chr7 (158-294)||(22814942-22815078)
chr7 (235-294)||(22875831-22875890)
chr7 (150-294)||(22839967-22840111)
chr7 (235-291)||(22858380-22858436)
[»] chr1 (2 HSPs)
chr1 (34-159)||(21150479-21150604)
chr1 (150-211)||(21150655-21150716)


Alignment Details
Target: chr7 (Bit Score: 128; Significance: 3e-66; HSPs: 22)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 159 - 294
Target Start/End: Complemental strand, 22805359 - 22805224
Alignment:
Q  159 atatcaatgatctgaaatcagttgtctcaactactgcagcctattacgatgatcatggtcaaatcagaactgtagacctttccagtggaaatccaataca 258  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||    
T  22805359 atatcaatgatctgaaatcagttgtctcaactactgcagcctattacgatgatcatggtcaaatcagaacagtagacctttccagtggaaatcctataca 22805260  T
Q  259 ggtatggattgattatgatggagtgaagaaaaagat 294  Q
    ||||||||||||||||||||||||||||||||||||    
T  22805259 ggtatggattgattatgatggagtgaagaaaaagat 22805224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 16 - 159
Target Start/End: Complemental strand, 22805562 - 22805419
Alignment:
Q  16 tcaatatccactttttactggccatggaattgtttttgttctttctccaacaaaagggctaccaaattcactaccaaatcaataccttggtctcattaac 115  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||     
T  22805562 tcaatatccaccttttactggccatggaattgtttttgttctttctccaacaaaagggctaccaaattcactaccaaatcaataccttggtctctttaat 22805463  T
Q  116 gattccaacaatggaaacagtagcaaccatgtttttggtgttga 159  Q
    ||||||||||||||||||||| ||||||||||||||||||||||    
T  22805462 gattccaacaatggaaacagtggcaaccatgtttttggtgttga 22805419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 116; E-Value: 5e-59
Query Start/End: Original strand, 16 - 159
Target Start/End: Complemental strand, 22815280 - 22815137
Alignment:
Q  16 tcaatatccactttttactggccatggaattgtttttgttctttctccaacaaaagggctaccaaattcactaccaaatcaataccttggtctcattaac 115  Q
    ||||||||||| ||||| |||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||| |||||    
T  22815280 tcaatatccaccttttagtggccaaggaattgtttttgttctttctcctacaaaagggctaccaaattcactaccaagtcaataccttggtctctttaac 22815181  T
Q  116 gattccaacaatggaaacagtagcaaccatgtttttggtgttga 159  Q
    |||||||||||||||||||||| |||||||||||||||||||||    
T  22815180 gattccaacaatggaaacagtaacaaccatgtttttggtgttga 22815137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 34 - 159
Target Start/End: Complemental strand, 22889527 - 22889402
Alignment:
Q  34 tggccatggaattgtttttgttctttctccaacaaaagggctaccaaattcactaccaaatcaataccttggtctcattaacgattccaacaatggaaac 133  Q
    |||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||| |||||||||||||||| ||||||||||||||| |||||||    
T  22889527 tggccatggaattgtttttgttatttctccaacaaaagggctaccagattcactaccaagtcaataccttggtctctttaacgattccaacagtggaaac 22889428  T
Q  134 agtagcaaccatgtttttggtgttga 159  Q
    ||||||||||||||||||||||||||    
T  22889427 agtagcaaccatgtttttggtgttga 22889402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 34 - 159
Target Start/End: Complemental strand, 22831266 - 22831141
Alignment:
Q  34 tggccatggaattgtttttgttctttctccaacaaaagggctaccaaattcactaccaaatcaataccttggtctcattaacgattccaacaatggaaac 133  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||| ||||| | ||||||| |||||||    
T  22831266 tggccatggaattgtttttgttctttctcctacaaaagggctaccaaattcactaccaaatcaatactttggtctctttaactactccaacattggaaac 22831167  T
Q  134 agtagcaaccatgtttttggtgttga 159  Q
    ||||||||||||||||||||||||||    
T  22831166 agtagcaaccatgtttttggtgttga 22831141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 16 - 159
Target Start/End: Complemental strand, 22898516 - 22898373
Alignment:
Q  16 tcaatatccactttttactggccatggaattgtttttgttctttctccaacaaaagggctaccaaattcactaccaaatcaataccttggtctcattaac 115  Q
    ||||||||||  | ||| |||||||||||||||||||||| | ||||| ||||||||||||||||||||||||| || |||||||||||||||| |||||    
T  22898516 tcaatatccaactcttagtggccatggaattgtttttgttgtctctcctacaaaagggctaccaaattcactacaaagtcaataccttggtctctttaac 22898417  T
Q  116 gattccaacaatggaaacagtagcaaccatgtttttggtgttga 159  Q
     | |||||||||||||| ||||||||||||||||||||||||||    
T  22898416 aaatccaacaatggaaatagtagcaaccatgtttttggtgttga 22898373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 39 - 159
Target Start/End: Complemental strand, 22876146 - 22876026
Alignment:
Q  39 atggaattgtttttgttctttctccaacaaaagggctaccaaattcactaccaaatcaataccttggtctcattaacgattccaacaatggaaacagtag 138  Q
    ||||||||||||||||| ||||||| ||||||||||||||||| |||||||||  |||||||||||||||| ||||| |||| |||||||||||||||||    
T  22876146 atggaattgtttttgttgtttctcctacaaaagggctaccaaactcactaccacgtcaataccttggtctctttaacaattcaaacaatggaaacagtag 22876047  T
Q  139 caaccatgtttttggtgttga 159  Q
    |||||||||||||||||||||    
T  22876046 caaccatgtttttggtgttga 22876026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 34 - 159
Target Start/End: Complemental strand, 22840287 - 22840162
Alignment:
Q  34 tggccatggaattgtttttgttctttctccaacaaaagggctaccaaattcactaccaaatcaataccttggtctcattaacgattccaacaatggaaac 133  Q
    |||||||||||||||||| ||| ||||||| |||||||||||||||||||||||||||| |||||||||||||||| ||||| | ||||||| |||||||    
T  22840287 tggccatggaattgttttcgttatttctcctacaaaagggctaccaaattcactaccaagtcaataccttggtctctttaaccaatccaacattggaaac 22840188  T
Q  134 agtagcaaccatgtttttggtgttga 159  Q
     || ||||||||||||||||||||||    
T  22840187 ggtggcaaccatgtttttggtgttga 22840162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 34 - 159
Target Start/End: Complemental strand, 22885827 - 22885704
Alignment:
Q  34 tggccatggaattgtttttgttctttctccaacaaaagggctaccaaattcactaccaaatcaataccttggtctcattaacgattccaacaatggaaac 133  Q
    |||||||||||||||||||||| |||| || ||||||||||||||||||||||||| | || ||||||||||||||  |||| |||||||||||||||||    
T  22885827 tggccatggaattgtttttgttatttcacctacaaaagggctaccaaattcactacaatattaataccttggtctc--taacaattccaacaatggaaac 22885730  T
Q  134 agtagcaaccatgtttttggtgttga 159  Q
    ||||||| ||||||||||||| ||||    
T  22885729 agtagcagccatgtttttggtattga 22885704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 34 - 159
Target Start/End: Complemental strand, 22894179 - 22894054
Alignment:
Q  34 tggccatggaattgtttttgttctttctccaacaaaagggctaccaaattcactaccaaatcaataccttggtctcattaacgattccaacaatggaaac 133  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||| | |  |  ||||||||||||| || |||||||||||||||||||     
T  22894179 tggccatggaattgtttttgttctttctcctacaaaagggctaccaaattcactccaaggttcataccttggtctctttgacgattccaacaatggaaat 22894080  T
Q  134 agtagcaaccatgtttttggtgttga 159  Q
      ||||||||| ||||||||||||||    
T  22894079 cctagcaaccacgtttttggtgttga 22894054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 34 - 154
Target Start/End: Complemental strand, 22913903 - 22913783
Alignment:
Q  34 tggccatggaattgtttttgttctttctccaacaaaagggctaccaaattcactaccaaatcaataccttggtctcattaacgattccaacaatggaaac 133  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||  | || || || ||||||||||||    
T  22913903 tggccatggaattgtttttgttctttctccaacaaaagggttaccaaattcactaccaagtcaataccttggtctattcaatgaatcaaacaatggaaac 22913804  T
Q  134 agtagcaaccatgtttttggt 154  Q
    |  |  |||||||||||||||    
T  22913803 aacaataaccatgtttttggt 22913783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 56 - 157
Target Start/End: Complemental strand, 22842365 - 22842264
Alignment:
Q  56 ctttctccaacaaaagggctaccaaattcactaccaaatcaataccttggtctcattaacgattccaacaatggaaacagtagcaaccatgtttttggtg 155  Q
    ||||| || |||||||||| ||||||||||||||||  |||||||||||||||| ||||| |||||||||||||||| ||||||||||||||||||||||    
T  22842365 ctttcacctacaaaagggcaaccaaattcactaccaggtcaataccttggtctctttaacaattccaacaatggaaatagtagcaaccatgtttttggtg 22842266  T
Q  156 tt 157  Q
    ||    
T  22842265 tt 22842264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 34 - 159
Target Start/End: Complemental strand, 22880799 - 22880674
Alignment:
Q  34 tggccatggaattgtttttgttctttctccaacaaaagggctaccaaattcactaccaaatcaataccttggtctcattaacgattccaacaatggaaac 133  Q
    |||||||||| ||||||||||| |||| ||||||||||||||||||||||| ||||||| | |||||||||||||| || ||  || ||||| |||||||    
T  22880799 tggccatggacttgtttttgttgtttcaccaacaaaagggctaccaaattcgctaccaagtaaataccttggtctctttgacactttcaacactggaaac 22880700  T
Q  134 agtagcaaccatgtttttggtgttga 159  Q
    | ||||||||||||||||| ||||||    
T  22880699 attagcaaccatgtttttgctgttga 22880674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 37 - 159
Target Start/End: Complemental strand, 22809876 - 22809754
Alignment:
Q  37 ccatggaattgtttttgttctttctccaacaaaagggctaccaaattcactaccaaatcaataccttggtctcattaacgattccaacaatggaaacagt 136  Q
    |||||||||||| |||||| |||| || ||||||||||| |||||||||  | ||| |||||| ||||||||| ||||| | ||||||||||||||||||    
T  22809876 ccatggaattgtatttgttgtttcacctacaaaagggctgccaaattcaaaagcaagtcaatatcttggtctctttaaccaatccaacaatggaaacagt 22809777  T
Q  137 agcaaccatgtttttggtgttga 159  Q
    || ||||||||||| ||||||||    
T  22809776 agtaaccatgttttcggtgttga 22809754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 66 - 159
Target Start/End: Complemental strand, 22858665 - 22858572
Alignment:
Q  66 caaaagggctaccaaattcactaccaaatcaataccttggtctcattaacgattccaacaatggaaacagtagcaaccatgtttttggtgttga 159  Q
    |||||||||||||| ||||||| ||||| ||||||||||||| | ||||||||||||||| |||||||| |||||||||||| |||| ||||||    
T  22858665 caaaagggctaccagattcacttccaaaccaataccttggtccctttaacgattccaacattggaaacactagcaaccatgtgtttgctgttga 22858572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 156 - 294
Target Start/End: Complemental strand, 22831084 - 22830946
Alignment:
Q  156 ttgatatcaatgatctgaaatcagttgtctcaactactgcagcctattacgatgatcatggtcaaatcagaactgtagacctttccagtggaaatccaat 255  Q
    |||||||||||||| ||||||||| |   |||||| ||||||  ||||| ||||||  ||||| | |||| | | ||  |||| |||||||| |||| ||    
T  22831084 ttgatatcaatgatttgaaatcagctaattcaactcctgcaggatattatgatgatactggtcgattcaggaatttatcccttaccagtggacatcctat 22830985  T
Q  256 acaggtatggattgattatgatggagtgaagaaaaagat 294  Q
     |||||||||||||| |||||||||||||||||||||||    
T  22830984 gcaggtatggattgaatatgatggagtgaagaaaaagat 22830946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 156 - 294
Target Start/End: Complemental strand, 22889345 - 22889207
Alignment:
Q  156 ttgatatcaatgatctgaaatcagttgtctcaactactgcagcctattacgatgatcatggtcaaatcagaactgtagacctttccagtggaaatccaat 255  Q
    |||||||||||||| ||||||||| ||  |||||| ||||||  ||||| |||| | |||||||| |||    | ||  ||||||||||||| | || ||    
T  22889345 ttgatatcaatgatttgaaatcagctgattcaactcctgcaggatattatgatggttatggtcaattcaaggatttatccctttccagtggataccctat 22889246  T
Q  256 acaggtatggattgattatgatggagtgaagaaaaagat 294  Q
     |||||||||||||| |||||||||||||||||||||||    
T  22889245 gcaggtatggattgaatatgatggagtgaagaaaaagat 22889207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 235 - 294
Target Start/End: Complemental strand, 22880565 - 22880506
Alignment:
Q  235 cctttccagtggaaatccaatacaggtatggattgattatgatggagtgaagaaaaagat 294  Q
    ||||||||||||| |||| || |||||||||||||| |||||||||||||||||||||||    
T  22880565 cctttccagtggatatcccatgcaggtatggattgactatgatggagtgaagaaaaagat 22880506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 158 - 294
Target Start/End: Complemental strand, 22815078 - 22814942
Alignment:
Q  158 gatatcaatgatctgaaatcagttgtctcaactactgcagcctattacgatgatcatggtcaaatcagaactgtagacctttccagtggaaatccaatac 257  Q
    ||||||||| || ||||||||| |   |||||| ||||||  |||||  |||||||||||||| ||||     ||  |||||||| ||||  ||| ||||    
T  22815078 gatatcaattatttgaaatcagctaattcaactcctgcaggatattataatgatcatggtcaattcagggagttatccctttccaatggatttcctatac 22814979  T
Q  258 aggtatggattgattatgatggagtgaagaaaaagat 294  Q
    ||||||||||||| |||||||||||||||||||||||    
T  22814978 aggtatggattgactatgatggagtgaagaaaaagat 22814942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 235 - 294
Target Start/End: Complemental strand, 22875890 - 22875831
Alignment:
Q  235 cctttccagtggaaatccaatacaggtatggattgattatgatggagtgaagaaaaagat 294  Q
    ||||| ||||||| |||| || |||||||||||||| |||||||||||||| ||||||||    
T  22875890 ccttttcagtggatatcccatgcaggtatggattgactatgatggagtgaaaaaaaagat 22875831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 150 - 294
Target Start/End: Complemental strand, 22840111 - 22839967
Alignment:
Q  150 ttggtgttgatatcaatgatctgaaatcagttgtctcaactactgcagcctattacgatgatcatggtcaaatcagaactgtagacctttccagtggaaa 249  Q
    ||||| |||||||||||||| ||||||||| |   |||||| ||||||  |||||||||||  ||  || | ||||   | ||  ||| ||||||||| |    
T  22840111 ttggtattgatatcaatgatttgaaatcagctaattcaactcctgcaggatattacgatgaatataatcgattcagggatttatccctctccagtggata 22840012  T
Q  250 tccaatacaggtatggattgattatgatggagtgaagaaaaagat 294  Q
    ||| || || ||||||||||| |||||| ||||||||||||||||    
T  22840011 tcctatgcaagtatggattgaatatgatagagtgaagaaaaagat 22839967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 235 - 291
Target Start/End: Complemental strand, 22858436 - 22858380
Alignment:
Q  235 cctttccagtggaaatccaatacaggtatggattgattatgatggagtgaagaaaaa 291  Q
    |||||| |||||| |||| || ||||||||||| || ||||||||||||||||||||    
T  22858436 cctttctagtggatatcctatgcaggtatggatagaatatgatggagtgaagaaaaa 22858380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 98; Significance: 3e-48; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 34 - 159
Target Start/End: Original strand, 21150479 - 21150604
Alignment:
Q  34 tggccatggaattgtttttgttctttctccaacaaaagggctaccaaattcactaccaaatcaataccttggtctcattaacgattccaacaatggaaac 133  Q
    |||||||||||||||||||||| ||||||| ||||||| ||||||||||||||||||||  ||||||||||||||| ||||| |||||||||||||||||    
T  21150479 tggccatggaattgtttttgttatttctcctacaaaagagctaccaaattcactaccaacacaataccttggtctctttaacaattccaacaatggaaac 21150578  T
Q  134 agtagcaaccatgtttttggtgttga 159  Q
    ||||||||||||||||||||||||||    
T  21150579 agtagcaaccatgtttttggtgttga 21150604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 150 - 211
Target Start/End: Original strand, 21150655 - 21150716
Alignment:
Q  150 ttggtgttgatatcaatgatctgaaatcagttgtctcaactactgcagcctattacgatgat 211  Q
    ||||| |||||||||||||| ||||||||| |  ||||||| |||||| |||||| ||||||    
T  21150655 ttggtattgatatcaatgatttgaaatcagctaactcaacttctgcaggctattatgatgat 21150716  T

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