View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1731_low_44 (Length: 250)

Name: NF1731_low_44
Description: NF1731
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1731_low_44
NF1731_low_44
[»] chr1 (3 HSPs)
chr1 (1-238)||(49547083-49547321)
chr1 (174-218)||(32123584-32123628)
chr1 (189-230)||(34141638-34141679)
[»] chr3 (4 HSPs)
chr3 (175-218)||(21777206-21777249)
chr3 (174-212)||(42668172-42668210)
chr3 (178-223)||(35586173-35586218)
chr3 (174-225)||(42157733-42157784)
[»] chr5 (4 HSPs)
chr5 (175-225)||(1175862-1175912)
chr5 (175-225)||(12150688-12150738)
chr5 (178-224)||(33740020-33740066)
chr5 (172-217)||(13839473-13839518)
[»] chr8 (2 HSPs)
chr8 (179-230)||(32874844-32874894)
chr8 (175-218)||(39418173-39418216)
[»] chr7 (2 HSPs)
chr7 (174-217)||(13858445-13858488)
chr7 (176-225)||(7181389-7181438)
[»] chr4 (2 HSPs)
chr4 (176-230)||(56439290-56439344)
chr4 (174-225)||(34713068-34713117)
[»] chr2 (2 HSPs)
chr2 (176-230)||(5193176-5193229)
chr2 (180-230)||(38216438-38216488)
[»] chr6 (1 HSPs)
chr6 (178-230)||(6695406-6695458)


Alignment Details
Target: chr1 (Bit Score: 190; Significance: 1e-103; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 1 - 238
Target Start/End: Complemental strand, 49547321 - 49547083
Alignment:
Q  1 aggttcatgcattatatctacttcggaaactaatttccactggtaaaaactgtcttacggccagaaaatattttgaaaacttcacgattgaaaaaacagc 100  Q
    |||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49547321 aggttcatgcattatatctacttcgggaactaatttccacgggtaaaaactgtcttacggccagaaaatattttgaaaacttcacgattgaaaaaacagc 49547222  T
Q  101 aactaagactctgagagtttcgaggggaggaagagtaggggggaaattggagaaatcttgcaca-nnnnnnnatagtgtttttgtagataatgataaatg 199  Q
    |||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||| ||||        ||||||||||||||||||||||||||||    
T  49547221 aactaagactctgagagtttcgaggggagggagagtagaggggaaattggagaaatcttccacattttttttatagtgtttttgtagataatgataaatg 49547122  T
Q  200 aatgtttatcattaatatacttttaaattttggaagtat 238  Q
    |||||||||||||||||||||||||||||||||||||||    
T  49547121 aatgtttatcattaatatacttttaaattttggaagtat 49547083  T

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Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 174 - 218
Target Start/End: Complemental strand, 32123628 - 32123584
Alignment:
Q  174 agtgtttttgtagataatgataaatgaatgtttatcattaatata 218  Q
    |||||||||||| | ||||||||||||||||||||||||||||||    
T  32123628 agtgtttttgtaaagaatgataaatgaatgtttatcattaatata 32123584  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 189 - 230
Target Start/End: Complemental strand, 34141679 - 34141638
Alignment:
Q  189 aatgataaatgaatgtttatcattaatatacttttaaatttt 230  Q
    |||||||||| ||||||||| ||||||||| |||||||||||    
T  34141679 aatgataaattaatgtttatgattaatatatttttaaatttt 34141638  T

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Target: chr3 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 175 - 218
Target Start/End: Original strand, 21777206 - 21777249
Alignment:
Q  175 gtgtttttgtagataatgataaatgaatgtttatcattaatata 218  Q
    ||||||||||||| ||||||||||||||||||||||||||||||    
T  21777206 gtgtttttgtagagaatgataaatgaatgtttatcattaatata 21777249  T

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Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 174 - 212
Target Start/End: Complemental strand, 42668210 - 42668172
Alignment:
Q  174 agtgtttttgtagataatgataaatgaatgtttatcatt 212  Q
    |||||||||||||||||||||||||||||||||||||||    
T  42668210 agtgtttttgtagataatgataaatgaatgtttatcatt 42668172  T

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Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 178 - 223
Target Start/End: Original strand, 35586173 - 35586218
Alignment:
Q  178 tttttgtagataatgataaatgaatgtttatcattaatatactttt 223  Q
    |||||||||| ||||||||||||| |||||||||||||||| ||||    
T  35586173 tttttgtagagaatgataaatgaaagtttatcattaatatattttt 35586218  T

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Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 174 - 225
Target Start/End: Original strand, 42157733 - 42157784
Alignment:
Q  174 agtgtttttgtagataatgataaatgaatgtttatcattaatatacttttaa 225  Q
    |||| ||||| ||| |||||||||||||||||||||||| ||||| ||||||    
T  42157733 agtgcttttgcagagaatgataaatgaatgtttatcattcatatatttttaa 42157784  T

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Target: chr5 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 175 - 225
Target Start/End: Original strand, 1175862 - 1175912
Alignment:
Q  175 gtgtttttgtagataatgataaatgaatgtttatcattaatatacttttaa 225  Q
    ||||||||||||| |||||||||||||||||||| ||||||||| ||||||    
T  1175862 gtgtttttgtagagaatgataaatgaatgtttatgattaatatatttttaa 1175912  T

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Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 175 - 225
Target Start/End: Complemental strand, 12150738 - 12150688
Alignment:
Q  175 gtgtttttgtagataatgataaatgaatgtttatcattaatatacttttaa 225  Q
    ||||||||||||||||||||||||||||  |||| ||||||||| ||||||    
T  12150738 gtgtttttgtagataatgataaatgaatacttatgattaatatatttttaa 12150688  T

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Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 178 - 224
Target Start/End: Original strand, 33740020 - 33740066
Alignment:
Q  178 tttttgtagataatgataaatgaatgtttatcattaatatactttta 224  Q
    ||||| ||||||||||||||| ||||||||| ||||||||| |||||    
T  33740020 tttttttagataatgataaatcaatgtttataattaatataatttta 33740066  T

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Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 172 - 217
Target Start/End: Original strand, 13839473 - 13839518
Alignment:
Q  172 atagtgtttttgtagataatgataaatgaatgtttatcattaatat 217  Q
    |||||| ||||||||| |||||||||||||| ||||| ||||||||    
T  13839473 atagtggttttgtagagaatgataaatgaatatttatgattaatat 13839518  T

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Target: chr8 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 179 - 230
Target Start/End: Complemental strand, 32874894 - 32874844
Alignment:
Q  179 ttttgtagataatgataaatgaatgtttatcattaatatacttttaaatttt 230  Q
    ||||||||||||||| |||||||||||||| ||||||||| |||||||||||    
T  32874894 ttttgtagataatgaaaaatgaatgtttatgattaatata-ttttaaatttt 32874844  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 175 - 218
Target Start/End: Complemental strand, 39418216 - 39418173
Alignment:
Q  175 gtgtttttgtagataatgataaatgaatgtttatcattaatata 218  Q
    ||||||||||||  |||||||||||||||||||| |||||||||    
T  39418216 gtgtttttgtagggaatgataaatgaatgtttatgattaatata 39418173  T

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Target: chr7 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 174 - 217
Target Start/End: Complemental strand, 13858488 - 13858445
Alignment:
Q  174 agtgtttttgtagataatgataaatgaatgtttatcattaatat 217  Q
    |||||||||||||||||||||||||||||| |||| ||||||||    
T  13858488 agtgtttttgtagataatgataaatgaatgcttatgattaatat 13858445  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 176 - 225
Target Start/End: Original strand, 7181389 - 7181438
Alignment:
Q  176 tgtttttgtagataatgataaatgaatgtttatcattaatatacttttaa 225  Q
    |||||||||||| ||||||||| ||||| |||| ||||||||| ||||||    
T  7181389 tgtttttgtagagaatgataaaagaatgcttatgattaatatatttttaa 7181438  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 176 - 230
Target Start/End: Original strand, 56439290 - 56439344
Alignment:
Q  176 tgtttttgtagataatgataaatgaatgtttatcattaatatacttttaaatttt 230  Q
    |||| ||||||| ||||||| ||||||||| |||||||||||| |||||| ||||    
T  56439290 tgttattgtagagaatgatagatgaatgttaatcattaatatatttttaattttt 56439344  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 174 - 225
Target Start/End: Complemental strand, 34713117 - 34713068
Alignment:
Q  174 agtgtttttgtagataatgataaatgaatgtttatcattaatatacttttaa 225  Q
    ||||||||||||||   |||||||||||||||||| ||||||||| ||||||    
T  34713117 agtgtttttgtagag--tgataaatgaatgtttatgattaatatatttttaa 34713068  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 176 - 230
Target Start/End: Complemental strand, 5193229 - 5193176
Alignment:
Q  176 tgtttttgtagataatgataaatgaatgtttatcattaatatacttttaaatttt 230  Q
    |||||||||| | ||| |||||||||||||||| ||||||||| |||||||||||    
T  5193229 tgtttttgtacagaataataaatgaatgtttatgattaatata-ttttaaatttt 5193176  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 180 - 230
Target Start/End: Original strand, 38216438 - 38216488
Alignment:
Q  180 tttgtagataatgataaatgaatgtttatcattaatatacttttaaatttt 230  Q
    |||||||| ||||||| |||||||||||| ||||||||| |||||| ||||    
T  38216438 tttgtagagaatgatagatgaatgtttatgattaatatatttttaattttt 38216488  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 178 - 230
Target Start/End: Complemental strand, 6695458 - 6695406
Alignment:
Q  178 tttttgtagataatgataaatgaatgtttatcattaatatacttttaaatttt 230  Q
    ||||| |||| ||||||||||||||| |||| ||||||||| |||| ||||||    
T  6695458 tttttttagagaatgataaatgaatgcttataattaatataatttttaatttt 6695406  T

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