View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1731_low_46 (Length: 249)
Name: NF1731_low_46
Description: NF1731
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1731_low_46 |
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| [»] scaffold0580 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 188; Significance: 1e-102; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 4 - 241
Target Start/End: Complemental strand, 7582495 - 7582248
Alignment:
| Q |
4 |
ttcactgtcaatgaacttttaacaaagagtta---------taaacaattagcttcaacaa-aaaccctaatttctaccattttttaatctattccccta |
93 |
Q |
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| T |
7582495 |
ttcactgtcaatgaacttttaacaaagagttacaagaattataaacaattagcttcaacaagaaaccctaatttctaccatttcttaatctatttcccta |
7582396 |
T |
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| Q |
94 |
aacaagagattcaaatattttctttccaaatgtttgtaaaagatttcccaacccaagactctaccacacaaaatgttatttggacaacagacaataattt |
193 |
Q |
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| T |
7582395 |
aacaagagattcaaatattttctttccaaatgtttgtaaaagatttcccaacccaaggctctaccacacaaaatgttatttggacaacaaacaataattt |
7582296 |
T |
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| Q |
194 |
ggttgtcttttctccttctcaaatcctagccgtcacaacttttcttct |
241 |
Q |
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| T |
7582295 |
ggttgtcttttctccttctcaaatcctagccgtaacaacttttcttct |
7582248 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 199 - 242
Target Start/End: Original strand, 40702368 - 40702411
Alignment:
| Q |
199 |
tcttttctccttctcaaatcctagccgtcacaacttttcttctc |
242 |
Q |
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| T |
40702368 |
tcttttctccttctcaaaccctagccgtcaccacctttcttctc |
40702411 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0580 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: scaffold0580
Description:
Target: scaffold0580; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 199 - 241
Target Start/End: Complemental strand, 978 - 936
Alignment:
| Q |
199 |
tcttttctccttctcaaatcctagccgtcacaacttttcttct |
241 |
Q |
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| T |
978 |
tcttttctctttctcaaatcctagccgttataacttttcttct |
936 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0580; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 199 - 241
Target Start/End: Complemental strand, 8717 - 8675
Alignment:
| Q |
199 |
tcttttctccttctcaaatcctagccgtcacaacttttcttct |
241 |
Q |
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| T |
8717 |
tcttttctctttctcaaatcctagccgttataacttttcttct |
8675 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 197 - 241
Target Start/End: Complemental strand, 38431698 - 38431654
Alignment:
| Q |
197 |
tgtcttttctccttctcaaatcctagccgtcacaacttttcttct |
241 |
Q |
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| T |
38431698 |
tgtcttttctccttcccaaacccttgccgtcaccacttttcttct |
38431654 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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