View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1731_low_48 (Length: 248)
Name: NF1731_low_48
Description: NF1731
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1731_low_48 |
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Alignment Details
Target: chr3 (Bit Score: 222; Significance: 1e-122; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 3 - 242
Target Start/End: Original strand, 33643630 - 33643866
Alignment:
| Q |
3 |
ctactacctctagtacatttacatccacattgaatgcatattggatgtgtagcctcatgctcatttatgttctttgctccataaatgctgagggaaagga |
102 |
Q |
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| T |
33643630 |
ctactacctctagtacatttacatccacattgaatgcatattggatgtgtagcctcatgctcatttatgttctttgctccataaatgctgagggaaagga |
33643729 |
T |
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| Q |
103 |
tcaattgaagaagggaagagggatacacaatccataatcctcacgttatccatttgaaaaaccatatttatgtgagatacacatcaaaatctcatgttgg |
202 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
33643730 |
---attgaagaagggaagagggatacacaatccataatcctcacgttatccatttgaaaaaccatatttatgtgagatatacatcaaaatctcatgttgg |
33643826 |
T |
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| Q |
203 |
aaccaccatgtcagctgcatttatgaattgtttcatctca |
242 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |
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| T |
33643827 |
aaccaccatgtcagctgcatttatgaattgtttcatctca |
33643866 |
T |
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