View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1731_low_59 (Length: 235)
Name: NF1731_low_59
Description: NF1731
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1731_low_59 |
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Alignment Details
Target: chr7 (Bit Score: 145; Significance: 2e-76; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 1 - 220
Target Start/End: Original strand, 7727376 - 7727598
Alignment:
| Q |
1 |
tcggccaggtgcaggtttgccgcacccgacaaagctccagtcgctacaacagtctgtactgttgtcccagtcggagaggcggccgttggggccaccaaaa |
100 |
Q |
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| T |
7727376 |
tcggccaggtaggggtttgccacacccgacgaagctccagtcgctacaacagtctgtactgttgtcccaatcggagaggcggccgttggggccgccgaaa |
7727475 |
T |
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| Q |
101 |
tggtctctgattttgagaagggtggctttgtcattggcattgcagaagaa---atcatcatcagcgttggatgtggagaagtagatggaagaaaggaaga |
197 |
Q |
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| T |
7727476 |
tggtctctgattttgaggagagtggctttgtcattggcattgcaggagaactcaacatcatcagcatttgatgtggagaagtagatggaagaaaggaaga |
7727575 |
T |
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| Q |
198 |
gaagtgttaaatggagaaggaga |
220 |
Q |
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|||||||||| ||||| |||||| |
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| T |
7727576 |
gaagtgttaagtggagtaggaga |
7727598 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 1 - 220
Target Start/End: Original strand, 7731536 - 7731758
Alignment:
| Q |
1 |
tcggccaggtgcaggtttgccgcacccgacaaagctccagtcgctacaacagtctgtactgttgtcccagtcggagaggcggccgttggggccaccaaaa |
100 |
Q |
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| T |
7731536 |
tcggccaggtaggggtttaccacacccgacgaagctccagtcgctacaacagtctgtaccgttgtcccaatcggaaaggcggccgttggggccgccgaaa |
7731635 |
T |
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| Q |
101 |
tggtctctgattttgagaagggtggctttgtcattggcattgcagaagaa---atcatcatcagcgttggatgtggagaagtagatggaagaaaggaaga |
197 |
Q |
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| T |
7731636 |
tggtctctgattttgaggagggtggctttgtcattggcgttgcaggagaactcaacatcatcagcatttgatgtggagaagtagatggaagaaaggaaga |
7731735 |
T |
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| Q |
198 |
gaagtgttaaatggagaaggaga |
220 |
Q |
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| T |
7731736 |
ggagtgtcaagtggagtaggaga |
7731758 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 1 - 220
Target Start/End: Original strand, 7739694 - 7739916
Alignment:
| Q |
1 |
tcggccaggtgcaggtttgccgcacccgacaaagctccagtcgctacaacagtctgtactgttgtcccagtcggagaggcggccgttggggccaccaaaa |
100 |
Q |
| |
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|||||||||| ||||| || |||||||| |||||||||||||||||||||||||||| ||||||||| ||||| ||||||||||||||||| || ||| |
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| T |
7739694 |
tcggccaggtaggggtttaccacacccgacgaagctccagtcgctacaacagtctgtaccgttgtcccaatcggaaaggcggccgttggggccgccgaaa |
7739793 |
T |
|
| Q |
101 |
tggtctctgattttgagaagggtggctttgtcattggcattgcagaagaa---atcatcatcagcgttggatgtggagaagtagatggaagaaaggaaga |
197 |
Q |
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||||||||||||||||| |||||||||||||||||||| |||||| |||| | |||||||||| || ||||||||||||||||||||||||||||||| |
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| T |
7739794 |
tggtctctgattttgaggagggtggctttgtcattggcgttgcaggagaactcaacatcatcagcatttgatgtggagaagtagatggaagaaaggaaga |
7739893 |
T |
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| Q |
198 |
gaagtgttaaatggagaaggaga |
220 |
Q |
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| T |
7739894 |
ggagtgtcaagtggagtaggaga |
7739916 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 13 - 220
Target Start/End: Original strand, 7699526 - 7699730
Alignment:
| Q |
13 |
aggtttgccgcacccgacaaagctccagtcgctacaacagtctgtactgttgtcccagtcggagaggcggccgttggggccaccaaaatggtctctgatt |
112 |
Q |
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|||| ||||||| ||||| ||||||||||| |||||| || || |||||||||||||| ||||||||| ||||| ||||| ||||||||||||||| |
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| T |
7699526 |
aggtctgccgcaaccgacgaagctccagtc---acaacattcggtgttgttgtcccagtcgtcgaggcggcctttgggaccaccgaaatggtctctgatt |
7699622 |
T |
|
| Q |
113 |
ttgagaagggtggctttgtcattggcattgcagaagaaatcatcatcagcgttggatgtggagaagtagatggaagaaaggaagagaagtgttaaatgga |
212 |
Q |
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||||| |||| ||||||||| | ||| ||||||||||| |||||| ||||| ||| ||||||||||||||||||||||||||||||||||||| |||| |
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| T |
7699623 |
ttgaggagggcggctttgtcgtcggcgttgcagaagaagtcatcacttgcgtttgatttggagaagtagatggaagaaaggaagagaagtgttaagtgga |
7699722 |
T |
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| Q |
213 |
gaaggaga |
220 |
Q |
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| T |
7699723 |
gtaggaga |
7699730 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 60 - 206
Target Start/End: Original strand, 7713915 - 7714061
Alignment:
| Q |
60 |
tgttgtcccagtcggagaggcggccgttggggccaccaaaatggtctctgattttgagaagggtggctttgtcattggcattgcagaagaaatcatcatc |
159 |
Q |
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|||||||||||||| || |||||||| ||||| ||||||||||||||||||||||| |||| ||||||||| | ||| ||||||||||| |||||| |
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| T |
7713915 |
tgttgtcccagtcgtcaagacggccgttagggccgccaaaatggtctctgattttgaggagggcggctttgtcgtcggcgttgcagaagaagtcatcact |
7714014 |
T |
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| Q |
160 |
agcgttggatgtggagaagtagatggaagaaaggaagagaagtgtta |
206 |
Q |
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| T |
7714015 |
tgcgtttgatttggagaagtagatggaagaaaggaagaagagtgtta |
7714061 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 45 - 117
Target Start/End: Complemental strand, 12907901 - 12907829
Alignment:
| Q |
45 |
tacaacagtctgtactgttgtcccagtcggagaggcggccgttggggccaccaaaatggtctctgattttgag |
117 |
Q |
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| T |
12907901 |
tacaacagtctgcattggtgtgccagtcggataggggtccgttagggccgccgaaatggtctcttattttgag |
12907829 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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