View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1731_low_60 (Length: 235)
Name: NF1731_low_60
Description: NF1731
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1731_low_60 |
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Alignment Details
Target: chr7 (Bit Score: 217; Significance: 1e-119; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 26987159 - 26987379
Alignment:
| Q |
1 |
ttcagaaaaaagagagaatctgcaaaatcagaagttttaaaagcactgtctgagattgagctgacagaagctatgataaaaactgccgaaatcaggttag |
100 |
Q |
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| T |
26987159 |
ttcagaaaaaagagagaatctgcaaaatcagaagttttaaaagcactgtctgagattgagctgacagaagctatgataaaaactgccgaaatcaggttag |
26987258 |
T |
|
| Q |
101 |
ttgcggcaaggaaaatgaaggaagcttctagagctgcagaagctgctacccttgcagaaattaacgcattgtctagccatgagggtacaccagaagagtg |
200 |
Q |
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| T |
26987259 |
ttgcggcaaggaaaatgaagcaagcttctagagctgcagaagctgctacccttgcagaaattaacgcattgtctagccatgagggtacaccagaagagtg |
26987358 |
T |
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| Q |
201 |
tatgcagaagcacgaggaaat |
221 |
Q |
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||||||||||||||||||||| |
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| T |
26987359 |
tatgcagaagcacgaggaaat |
26987379 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 25 - 126
Target Start/End: Complemental strand, 10029364 - 10029263
Alignment:
| Q |
25 |
aaatcagaagttttaaaagcactgtctgagattgagctgacagaagctatgataaaaactgccgaaatcaggttagttgcggcaaggaaaatgaaggaag |
124 |
Q |
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|||||||||||| | |||| ||||||||||||| | |||| |||||||||||| ||| ||||||| || |||||||| || | ||||||||||||| |
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| T |
10029364 |
aaatcagaagttacgagagcaatgtctgagattgaacagacaaaagctatgataagaacatccgaaattagattagttgctgctcgaaaaatgaaggaag |
10029265 |
T |
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| Q |
125 |
ct |
126 |
Q |
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|| |
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| T |
10029264 |
ct |
10029263 |
T |
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