View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1731_low_62 (Length: 227)
Name: NF1731_low_62
Description: NF1731
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1731_low_62 |
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| [»] chr7 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 211; Significance: 1e-116; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 1 - 227
Target Start/End: Original strand, 30119861 - 30120087
Alignment:
| Q |
1 |
aatttgtaaaatatactagaaagaagtccggatcaggacgtatagaaaaaacaagagtcttaatccaagatgaatacactgcatattcttgcattaccca |
100 |
Q |
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| T |
30119861 |
aatttgtaaaatatacaaggaagaagtccggatcaggacgtatagaaaaaacaagagtcttaatccaagatgaatgcactgcatattcttgcattaccca |
30119960 |
T |
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| Q |
101 |
tatctccactacatccatgtccacaatccatgcactaataagcccatcaagcaccaacaaatcatattgtatagaataagtaacacaaaaatccttaggc |
200 |
Q |
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| T |
30119961 |
tatctccactacatccatgtccacaatccatgcactaataagcccatcaagcaccaacaaatcatattgtatagaataagtaacacaaaaatcctttggc |
30120060 |
T |
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| Q |
201 |
agagctatctctgatattgtcgtttcc |
227 |
Q |
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| T |
30120061 |
agagctatctctgatattgtcgtttcc |
30120087 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 44 - 166
Target Start/End: Complemental strand, 30165922 - 30165800
Alignment:
| Q |
44 |
agaaaaaacaagagtcttaatccaagatgaatacactgcatattcttgcattacccatatctccactacatccatgtccacaatccatgcactaataagc |
143 |
Q |
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| T |
30165922 |
agaaaaatcaagagtcgtagtccaagatgaatgcactgcgtattcttgcatcacccatatcttaactgtagacctctccacattccatacactgataagt |
30165823 |
T |
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| Q |
144 |
ccatcaagcaccaacaaatcata |
166 |
Q |
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| T |
30165822 |
ccatgaaataccaacaaatcata |
30165800 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 44 - 105
Target Start/End: Original strand, 43164671 - 43164732
Alignment:
| Q |
44 |
agaaaaaacaagagtcttaatccaagatgaatacactgcatattcttgcattacccatatct |
105 |
Q |
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| T |
43164671 |
agaaaaatcaaaagtcttggtccaagatgaatgcacagcgtattcttgcattacccatatct |
43164732 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 44 - 105
Target Start/End: Original strand, 41310993 - 41311054
Alignment:
| Q |
44 |
agaaaaaacaagagtcttaatccaagatgaatacactgcatattcttgcattacccatatct |
105 |
Q |
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| T |
41310993 |
agaaaaatcaaaagtcttagtccaagatgaatgtattgcgtattcttgcatcacccatatct |
41311054 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.00000008; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 42 - 103
Target Start/End: Complemental strand, 48863692 - 48863631
Alignment:
| Q |
42 |
atagaaaaaacaagagtcttaatccaagatgaatacactgcatattcttgcattacccatat |
103 |
Q |
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| T |
48863692 |
atagaaagcacaagagttttaatccaagatgaatgcactccgtattcttccatcacccatat |
48863631 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 51 - 103
Target Start/End: Original strand, 49040795 - 49040847
Alignment:
| Q |
51 |
acaagagtcttaatccaagatgaatacactgcatattcttgcattacccatat |
103 |
Q |
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| T |
49040795 |
acaagaattttaatccaagatgaatgcactccatattcttccatcacccatat |
49040847 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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