View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1731_low_64 (Length: 223)
Name: NF1731_low_64
Description: NF1731
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1731_low_64 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 174; Significance: 9e-94; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 174; E-Value: 9e-94
Query Start/End: Original strand, 38 - 223
Target Start/End: Complemental strand, 45389927 - 45389742
Alignment:
| Q |
38 |
ctgatcattaatgacaatgttaatgttcagttgcatcagaatagaacacttaaatgcaagtgtggtatcgagggaatgaggtatctcaaaattttggtta |
137 |
Q |
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| T |
45389927 |
ctgatcattaatgacaatgttaatgttcagttgcatcagaatagaagacttaaatgcaagtgtggtatcgagggaatgaggtatctcaaaattttggtta |
45389828 |
T |
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| Q |
138 |
cacctgcaaaaccgactaataaggtgagggaagcctctcacttaaacacattttcacgtcatttatcattcaatgagggacccaat |
223 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||| |
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| T |
45389827 |
cacctgcaaaaccgactaataaggtgagggaagcctctcacttaaacacattttcacgccatttatcattcaatgagggactcaat |
45389742 |
T |
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