View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1731_low_65 (Length: 214)
Name: NF1731_low_65
Description: NF1731
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1731_low_65 |
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Alignment Details
Target: chr1 (Bit Score: 157; Significance: 1e-83; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 1 - 198
Target Start/End: Original strand, 48153140 - 48153337
Alignment:
| Q |
1 |
gatctaatgatcaaaaactaactttcccatattggnnnnnnngtagctttcccatgctaaatcttaccaggaaaagaaactattttagttcaaccacaag |
100 |
Q |
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| T |
48153140 |
gatctaatgatcaaaaactaactttcccatattgggaaaaaagtagctttcccatgctaaacctcatcaggaaaagaaactattttagttcaaccacaag |
48153239 |
T |
|
| Q |
101 |
aaaaatgtctcgtaccgtgagatattacacaaccaaaaacttgtttcaacaagtacagaaaagatcattcaaaagcaaaatttaaattgttaagaaac |
198 |
Q |
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| T |
48153240 |
aaaaatgtctcgtaccgtgagatattacacaaccaaaaacttatttcaacaagtacagaaaagatcgttcaaaagcaaaatttaaattgttaagaaac |
48153337 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 61
Target Start/End: Complemental strand, 34717309 - 34717249
Alignment:
| Q |
1 |
gatctaatgatcaaaaactaactttcccatattggnnnnnnngtagctttcccatgctaaa |
61 |
Q |
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|||||||||||||||||||||||||||||| ||| ||||||||||||||||||| |
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| T |
34717309 |
gatctaatgatcaaaaactaactttcccatggtgggaaaaaagtagctttcccatgctaaa |
34717249 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 61
Target Start/End: Complemental strand, 32473828 - 32473768
Alignment:
| Q |
1 |
gatctaatgatcaaaaactaactttcccatattggnnnnnnngtagctttcccatgctaaa |
61 |
Q |
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||||||||| ||||||||||||||||||||| ||| ||||||||||||||||||| |
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| T |
32473828 |
gatctaatggtcaaaaactaactttcccatagtgggaaaaaagtagctttcccatgctaaa |
32473768 |
T |
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