View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1731_low_67 (Length: 204)
Name: NF1731_low_67
Description: NF1731
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1731_low_67 |
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Alignment Details
Target: chr1 (Bit Score: 173; Significance: 3e-93; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 173; E-Value: 3e-93
Query Start/End: Original strand, 12 - 188
Target Start/End: Complemental strand, 41748233 - 41748057
Alignment:
| Q |
12 |
acataattctataaactatagaatttgtcaaatagttaatttgataaatttaattataagttcttagtttgatttattgtgcaactaatatacatgcagc |
111 |
Q |
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| T |
41748233 |
acataattctataaactatagaatttgtcaaatagttaatttgataaatttaattataagttcttagtttgatttattgtgcaactaatatacatgcagc |
41748134 |
T |
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| Q |
112 |
ttcctttctgaatataaaatcccctagaccatattcattgaagaattcctcagaactacaatatggcatgaactttg |
188 |
Q |
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| T |
41748133 |
ttcctttctgaatataaaatcccctagaccatattcattgaagaaatcctcagaactacaatatggcatgaactttg |
41748057 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 105 - 188
Target Start/End: Complemental strand, 41734471 - 41734388
Alignment:
| Q |
105 |
atgcagcttcctttctgaatataaaatcccctagaccatattcattgaagaattcctcagaactacaatatggcatgaactttg |
188 |
Q |
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| T |
41734471 |
atgcagcttcctttttgaaaataaaatcccccacaccgtatgcattgagaaattccacagaagtacaatatggtctgaactttg |
41734388 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 105 - 188
Target Start/End: Complemental strand, 41758771 - 41758688
Alignment:
| Q |
105 |
atgcagcttcctttctgaatataaaatcccctagaccatattcattgaagaattcctcagaactacaatatggcatgaactttg |
188 |
Q |
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||||||||||||||||||| || ||| |||||| ||||||| |||||| ||||||||| |||||| |||| || ||||||| |
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| T |
41758771 |
atgcagcttcctttctgaaaattaaaacccctacaccatatgcattgagaaattcctcaactctacaaaatggaatcaactttg |
41758688 |
T |
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