View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1731_low_8 (Length: 473)
Name: NF1731_low_8
Description: NF1731
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1731_low_8 |
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| [»] scaffold1667 (1 HSPs) |
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| [»] scaffold0044 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 75; Significance: 2e-34; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 274 - 352
Target Start/End: Complemental strand, 34944611 - 34944533
Alignment:
| Q |
274 |
cccaaataaaaatggagtcatgtcgtgctagctctttgcttcgggcccggccactatcaccaattccatatagtttttg |
352 |
Q |
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| T |
34944611 |
cccaaataaaaatggagtcatgtcgtgctagctctttgcttcgggcccggccactatcaacaattccatatagtttttg |
34944533 |
T |
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Target: scaffold1667 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold1667
Description:
Target: scaffold1667; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 18 - 74
Target Start/End: Original strand, 720 - 776
Alignment:
| Q |
18 |
aagcaacgacgtcccaactagattggcacctcgaaaaaccttcatcctccgccgcca |
74 |
Q |
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| T |
720 |
aagcaacgacatcccgactaggttggcacctcgaagaacctccatcctatgccgcca |
776 |
T |
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Target: scaffold0044 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0044
Description:
Target: scaffold0044; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 18 - 74
Target Start/End: Complemental strand, 20919 - 20863
Alignment:
| Q |
18 |
aagcaacgacgtcccaactagattggcacctcgaaaaaccttcatcctccgccgcca |
74 |
Q |
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|||||||||| |||| ||||| ||||||||||||| ||||| |||||| ||||||| |
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| T |
20919 |
aagcaacgacatcccgactaggttggcacctcgaagaacctccatcctatgccgcca |
20863 |
T |
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