View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1731_low_9 (Length: 455)
Name: NF1731_low_9
Description: NF1731
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1731_low_9 |
 | |
|
| [»] scaffold0201 (2 HSPs) |
| | |
|
Alignment Details
Target: chr3 (Bit Score: 94; Significance: 1e-45; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 74 - 293
Target Start/End: Complemental strand, 23403138 - 23402922
Alignment:
| Q |
74 |
aggaaattggtaaattaaaatccattgctcaagactccgatgagatgcagcctagagcatttggaggtgaaggaagaagctcaaacaatgaaaatgaaga |
173 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||| | ||| |||| |||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
23403138 |
aggaaattggtaaattaaaatccattgctcaagactctgatgtgt------ctatagcaattggaggtgaaggaagaagctcaaacaatgaaaatgaata |
23403045 |
T |
|
| Q |
174 |
tgacctgttacaaccttcttgttcaaggaaagaagaggaacagatttctg---gtagacctcctattaaacatgtttatgttagacgcaggtccaaagta |
270 |
Q |
| |
|
||||| | ||||||||||| ||| |||||||||||||| |||| |||||||||||||||||||||| ||||||||||||||| ||||||| |
|
|
| T |
23403044 |
tgaccaggaacaaccttcttattctcacaaagaagaggaacaaccttctattcgtagacctcctattaaacatgtatatgttagacgcaggcgcaaagta |
23402945 |
T |
|
| Q |
271 |
attagaccaaagtctgtgtaatt |
293 |
Q |
| |
|
|||||||| |||| ||||||||| |
|
|
| T |
23402944 |
attagacccaagtttgtgtaatt |
23402922 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 74 - 177
Target Start/End: Complemental strand, 23381988 - 23381891
Alignment:
| Q |
74 |
aggaaattggtaaattaaaatccattgctcaagactccgatgagatgcagcctagagcatttggaggtgaaggaagaagctcaaacaatgaaaatgaaga |
173 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||| | ||| |||| ||||||||||||| |||||||| ||||||||||||||||| |
|
|
| T |
23381988 |
aggaaattggtaaattaaaatccattgctcaagactctgatg------tgtctatagcaattggaggtgaaggtagaagctccaacaatgaaaatgaaga |
23381895 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 74 - 191
Target Start/End: Complemental strand, 23461724 - 23461613
Alignment:
| Q |
74 |
aggaaattggtaaattaaaatccattgctcaagactccgatgagatgcagcctagagcatttggaggtgaaggaagaagctcaaacaatgaaaatgaaga |
173 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||| | ||| |||| |||||||||||| |||||||| ||||||||||||||||| |
|
|
| T |
23461724 |
aggaaattggtaaattaaaatccattgctcaagactctgatg------tgtctatagcaattggaggtgaagtcagaagctctaacaatgaaaatgaaga |
23461631 |
T |
|
| Q |
174 |
tgacctgttacaaccttc |
191 |
Q |
| |
|
| ||| | ||||||||| |
|
|
| T |
23461630 |
taaccaggaacaaccttc |
23461613 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 249 - 315
Target Start/End: Complemental strand, 23470713 - 23470647
Alignment:
| Q |
249 |
tgttagacgcaggtccaaagtaattagaccaaagtctgtgtaattgtaagtttgtatctttaaacaa |
315 |
Q |
| |
|
||||||||||||| | ||||||||||||| ||||||||||||||||| |||||||||||||||||| |
|
|
| T |
23470713 |
tgttagacgcaggcgccaagtaattagacccaagtctgtgtaattgtatgtttgtatctttaaacaa |
23470647 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 74 - 193
Target Start/End: Complemental strand, 23470855 - 23470742
Alignment:
| Q |
74 |
aggaaattggtaaattaaaatccattgctcaagactccgatgagatgcagcctagagcatttggaggtgaaggaagaagctcaaacaatgaaaatgaaga |
173 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||| ||| | ||| |||| ||||||||||||| ||||||| ||||||||||||||||| |
|
|
| T |
23470855 |
aggaaattggtaagttaaaatccattgctcaagactcttatgtgt------ctatagcaattggaggtgaaggcagaagctataacaatgaaaatgaaga |
23470762 |
T |
|
| Q |
174 |
tgacctgttacaaccttctt |
193 |
Q |
| |
|
||| | | ||||||||||| |
|
|
| T |
23470761 |
tgatcaggaacaaccttctt |
23470742 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 77 - 175
Target Start/End: Complemental strand, 23438352 - 23438260
Alignment:
| Q |
77 |
aaattggtaaattaaaatccattgctcaagactccgatgagatgcagcctagagcatttggaggtgaaggaagaagctcaaacaatgaaaatgaagatg |
175 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||| | ||| |||| || |||||||||| ||||||| |||||||||| |||||||| |
|
|
| T |
23438352 |
aaattggtaaattaaaatccattgctcaagactctgatg------tgtctatagcaattagaggtgaaggcagaagctataacaatgaaactgaagatg |
23438260 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0201 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 2)
Name: scaffold0201
Description:
Target: scaffold0201; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 224 - 330
Target Start/End: Complemental strand, 9818 - 9712
Alignment:
| Q |
224 |
gtagacctcctattaaacatgtttatgttagacgcaggtccaaagtaattagaccaaagtctgtgtaattgtaagtttgtatctttaaacaaatccccat |
323 |
Q |
| |
|
||||||| |||||||||||||| || |||||||||||| |||| ||||||||| ||| |||||||||||| |||||||||| || | ||| |||||| |
|
|
| T |
9818 |
gtagaccacctattaaacatgtctacgttagacgcaggcgcaaatcaattagacctaagcttgtgtaattgtatgtttgtatctctagataaagccccat |
9719 |
T |
|
| Q |
324 |
ttggttg |
330 |
Q |
| |
|
| ||||| |
|
|
| T |
9718 |
tcggttg |
9712 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0201; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 74 - 110
Target Start/End: Complemental strand, 9896 - 9860
Alignment:
| Q |
74 |
aggaaattggtaaattaaaatccattgctcaagactc |
110 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9896 |
aggaaattggtaaattaaaatccattgctcaagactc |
9860 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 134 - 177
Target Start/End: Complemental strand, 15043146 - 15043103
Alignment:
| Q |
134 |
ttggaggtgaaggaagaagctcaaacaatgaaaatgaagatgac |
177 |
Q |
| |
|
||||||||||||| |||||||| ||||||||||||||||||||| |
|
|
| T |
15043146 |
ttggaggtgaaggtagaagctccaacaatgaaaatgaagatgac |
15043103 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 224 - 256
Target Start/End: Original strand, 21771823 - 21771855
Alignment:
| Q |
224 |
gtagacctcctattaaacatgtttatgttagac |
256 |
Q |
| |
|
|||||||||||||||| |||||||||||||||| |
|
|
| T |
21771823 |
gtagacctcctattaatcatgtttatgttagac |
21771855 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University