View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1732-Insertion-1 (Length: 1082)
Name: NF1732-Insertion-1
Description: NF1732
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1732-Insertion-1 |
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Alignment Details
Target: chr2 (Bit Score: 901; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 901; E-Value: 0
Query Start/End: Original strand, 7 - 1057
Target Start/End: Complemental strand, 25746095 - 25745056
Alignment:
| Q |
7 |
acaagtgtttcctggtctgaggatgcaaaatatgtggcaacaggatttttgcactctcagcttcaaatctgggatgccgagacttccaagctagtaagaa |
106 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
25746095 |
acaagtgtttcctggtctgaggatgcaaaatatgtggcaacaggatttgtgcactctcaacttcaaatctgggatgccgagacttccaagctagtaagaa |
25745996 |
T |
|
| Q |
107 |
atcttgaaggtcatactcaaaggatacctactctagcatggaataataataatcgtattttaacttccggaggccacgacaaatctataatcaaccatga |
206 |
Q |
| |
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|||||||||||||| ||||||||||| | ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25745995 |
atcttgaaggtcatgctcaaaggatagcaactctagcatggaataataat---cgtattttaacttccggaggccacgacaaatctataatcaaccatga |
25745899 |
T |
|
| Q |
207 |
tggtaattagatttagttcttctctttaaatcttttcgatgtattttatgtacgaatacataaagcttttgataaaatgttgtaacttaacgtactgatg |
306 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||| |
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| T |
25745898 |
tggtaattagatttagttcttctctttaaatcttttcgatgtattttatgtacgaatacataaagcttttgataaaatgctgtaacttaacgtaatgatg |
25745799 |
T |
|
| Q |
307 |
tattatgttcttgtgtgcagtaagagcaagaagaaatgaggtttcgaggataaaaacacacagagcagaaatctgcggtttaaaatggtcgaaaaggggc |
406 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25745798 |
tattatgttcttgtgtgcagtaagagcaagaagaaatgaggttttgaggataaaaacacacagagcagaaatctgcggtttaaaatggtcgaaaaggggc |
25745699 |
T |
|
| Q |
407 |
aatttattggctagtggtggcaatgaaaatcatgtttatgtatgggactcgaataaaatgaactcgtcgaatttcttgcattgttttaaagagcatactg |
506 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
25745698 |
aatttattggctagtggtggcaatgaaaatcatgtttatgtatgggactcgaataaaatgaactcgtcaaatttcttgcattgttttaaagagcatactg |
25745599 |
T |
|
| Q |
507 |
cggcagtcaaagctcttgattggtgcccttatgattcagatgtgcttgcttctggaggcggaacagatgatagatgtattaagttgtggaatgtacaaag |
606 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25745598 |
cggcagtcaaagctctcgattggtgcccttatgattcagatgtgcttgcttctggaggcggaacagatgatagatgtattaagttgtggaatgtacaaag |
25745499 |
T |
|
| Q |
607 |
aggaactaacatttgcagcatagataccaaagctcaggtttgtggattacagtggaatagacattacaaagagatattaagtggtcatggttttagtaca |
706 |
Q |
| |
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|||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
25745498 |
aggaaccaacatttgcagcatagataccaaagctcaggtttgtggattacaatggaatagacattacaaagagatattaagtggtcatggctttagtaca |
25745399 |
T |
|
| Q |
707 |
agtccagaacacaaccaactgtgtttgtggcaatatccatctatgactaaagttggaggcttggaccctcatacttcgagagtccttcatctttctcagg |
806 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||| |
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| T |
25745398 |
agtccagaacacaaccaactgtgtttgtggcaatatccatccatgactaaagttggaggcttggaccctcatacttctagagtcctccatctttctcagg |
25745299 |
T |
|
| Q |
807 |
tatgcttcaagtcattattacttaaaccagtatagtggtaaatcgagagacgattaatcgtccaatgtgaatttttaaagcatgtaataatgtgagtaca |
906 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||| |||| ||||||| |
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| T |
25745298 |
tatgcttcaagtcatcattacttaaaccagtatagtggtaaatcgtgagacgattaatcgtccaatgtgaatttttatagcatgtaagaatgcgagtaca |
25745199 |
T |
|
| Q |
907 |
gtcattcattatttcattggcaagagcatctaatttagctgcttcagattgttttcatataaacttcaactttgttaaaacatataaacatgaatggaaa |
1006 |
Q |
| |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
25745198 |
gtcatt--------cattggcaagagcatctaatttagctgcttcagattgttttcatataaacttcaactttgttaaaacatataaacatgaat-caaa |
25745108 |
T |
|
| Q |
1007 |
ccacttaaactttatcaaggtgattatttcattcaag-taccctaatgctct |
1057 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||| |||||||||| |
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|
| T |
25745107 |
ccacttaaactttatcaaggtgattatttcattcaagttacactaatgctct |
25745056 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 222; Significance: 1e-121; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 222; E-Value: 1e-121
Query Start/End: Original strand, 678 - 1044
Target Start/End: Original strand, 4348615 - 4348983
Alignment:
| Q |
678 |
agatattaagtggtcat---ggttttagtacaagtccagaacacaaccaactgtgtttgtggcaatatccatctatgactaaagttggaggcttggaccc |
774 |
Q |
| |
|
||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| || |
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| T |
4348615 |
agatattaagtggtcatcatggctttagtacaagtccagaacacaaccaactgtgtttgtggcaatatccatctatgactaaagttggtggcttggatcc |
4348714 |
T |
|
| Q |
775 |
tcatacttcgagagtccttcatctttctcaggtatgcttcaagtcattattacttaaaccagtatagtggtaaatcgagagacgattaatcgtccaatgt |
874 |
Q |
| |
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|||||||| |||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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|
| T |
4348715 |
ccatacttctagagtcctccatctttctcaggtatgcttcaagtcataattacttaaaccagtatagtggtaaatcgagagacgattaatcatccaatgt |
4348814 |
T |
|
| Q |
875 |
gaatttttaaagcatgtaataatgtgagtacagtcattcattatttcattggcaagagcatctaatttagctgcttcagattgttttc--------atat |
966 |
Q |
| |
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|||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||| ||| ||||| |||||||||| | || |
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| T |
4348815 |
gaatttttaaagcatgtaataatgtgagtacaatca--------ttcattggcaagagcatctaatatagttgcttgggattgttttcaacaagtgacat |
4348906 |
T |
|
| Q |
967 |
aaacttcaactttgttaaaacatataaacatgaatggaaaccacttaaactttatcaaggtgattatttcattcaagt |
1044 |
Q |
| |
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|||||||||| ||||||||||||||||||||||| |||||||||||||||||| ||||| ||||||||| ||||||| |
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|
| T |
4348907 |
caacttcaactatgttaaaacatataaacatgaat-gaaaccacttaaactttaacaaggggattatttctttcaagt |
4348983 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 94; Significance: 3e-45; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 94; E-Value: 3e-45
Query Start/End: Original strand, 32 - 219
Target Start/End: Complemental strand, 18929518 - 18929334
Alignment:
| Q |
32 |
caaaatatgtggcaacaggatttttgcactctcagcttcaaatctgggatgccgagacttccaagctagtaagaaatcttgaaggtcatactcaaaggat |
131 |
Q |
| |
|
|||| ||||||||||||| |||| || ||||||| |||||| |||||||||| ||||||||||||||||||||||||||||||||||||| ||||| ||| |
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|
| T |
18929518 |
caaattatgtggcaacagaatttgtgaactctcaacttcaactctgggatgctgagacttccaagctagtaagaaatcttgaaggtcatagtcaaaagat |
18929419 |
T |
|
| Q |
132 |
acctactctagcatggaataataataatcgtattttaacttccggaggccacgacaaatctataatcaaccatgatggtaattagatt |
219 |
Q |
| |
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| | ||||||||||||| |||| || |||||||||||| ||| |||| ||| |||| ||||||||||||||||||||||||||| |
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|
| T |
18929418 |
agcaactctagcatgga---ataaccgtcatattttaacttctggaagccatgaccaatcgataatcaaccatgatggtaattagatt |
18929334 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 72; E-Value: 3e-32
Query Start/End: Original strand, 314 - 473
Target Start/End: Complemental strand, 18929212 - 18929053
Alignment:
| Q |
314 |
ttcttgtgtgcagtaagagcaagaagaaatgaggtttcgaggataaaaacacacagagcagaaatctgcggtttaaaatggtcgaaaaggggcaatttat |
413 |
Q |
| |
|
||||||| |||||| |||||||||||||||| |||||| || ||||| |||||| |||| || | |||||||| |||||||||||||| ||||||||| |
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|
| T |
18929212 |
ttcttgtatgcagttagagcaagaagaaatgtggtttctcgggtaaaagcacacaaagcataagtttgcggtttgaaatggtcgaaaagcagcaatttat |
18929113 |
T |
|
| Q |
414 |
tggctagtggtggcaatgaaaatcatgtttatgtatgggactcgaataaaatgaactcgt |
473 |
Q |
| |
|
|||| |||||||||||||||||||| | ||||| |||||| | ||||| |||||||||| |
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|
| T |
18929112 |
tggcaagtggtggcaatgaaaatcacatctatgtgtgggacgcaaataagatgaactcgt |
18929053 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 71; E-Value: 1e-31
Query Start/End: Original strand, 641 - 813
Target Start/End: Complemental strand, 18928709 - 18928523
Alignment:
| Q |
641 |
caggtttgtggattacagtggaatagacattacaaagagatattaagtggtcatggttttagtacaagtccagaacacaaccaactgtgtttgtggcaat |
740 |
Q |
| |
|
||||||||||| ||||| ||||||||||| |||||||||||| |||||||||| | |||||||||| |||| |||| |||||||||||||||||||||| |
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|
| T |
18928709 |
caggtttgtggtttacaatggaatagacaccacaaagagatatcaagtggtcatagctttagtacaaatccaaaacataaccaactgtgtttgtggcaat |
18928610 |
T |
|
| Q |
741 |
at-----------ccatctatgactaaagttggaggcttggaccctcatact---tcgagagtccttcatctttctcaggtatgctt |
813 |
Q |
| |
|
|| |||||||||| ||| ||||||||||| ||||||||||| || |||||||| |||||||||||||||||||| |
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|
| T |
18928609 |
atgccaatatccatcatctatgaccaaacttggaggcttgaaccctcatacttcctccagagtcctccatctttctcaggtatgctt |
18928523 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 57; E-Value: 3e-23
Query Start/End: Original strand, 639 - 747
Target Start/End: Complemental strand, 36841081 - 36840973
Alignment:
| Q |
639 |
ctcaggtttgtggattacagtggaatagacattacaaagagatattaagtggtcatggttttagtacaagtccagaacacaaccaactgtgtttgtggca |
738 |
Q |
| |
|
||||||||||||| ||||| ||||||||| | |||||||||||||||||||||| |||||||||| |||| |||| ||||||||||||||||||| |
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| T |
36841081 |
ctcaggtttgtggtttacaatggaatagatgccataaagagatattaagtggtcatgactttagtacaaatccaaaacattaccaactgtgtttgtggca |
36840982 |
T |
|
| Q |
739 |
atatccatc |
747 |
Q |
| |
|
||||||||| |
|
|
| T |
36840981 |
atatccatc |
36840973 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 55; E-Value: 5e-22
Query Start/End: Original strand, 37 - 151
Target Start/End: Complemental strand, 36841204 - 36841090
Alignment:
| Q |
37 |
tatgtggcaacaggatttttgcactctcagcttcaaatctgggatgccgagacttccaagctagtaagaaatcttgaaggtcatactcaaaggataccta |
136 |
Q |
| |
|
|||||||||||||||||| || ||||||| |||||| |||||||||| |||||||||||| || ||||||||||||||||||| ||||| |||| | | |
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| T |
36841204 |
tatgtggcaacaggatttgtgaactctcaacttcaactctgggatgctaagacttccaagccaggtagaaatcttgaaggtcatagtcaaaagatagcaa |
36841105 |
T |
|
| Q |
137 |
ctctagcatggaata |
151 |
Q |
| |
|
|||| || ||||||| |
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|
| T |
36841104 |
ctctggcttggaata |
36841090 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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