View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1732-Insertion-12 (Length: 618)
Name: NF1732-Insertion-12
Description: NF1732
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1732-Insertion-12 |
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| [»] chr7 (8 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 558; Significance: 0; HSPs: 8)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 558; E-Value: 0
Query Start/End: Original strand, 53 - 618
Target Start/End: Original strand, 32095452 - 32096017
Alignment:
| Q |
53 |
caagattcctataaagagaaccaaaggatacaagagtgtgatcctctatttatactaaagctggagagtccctttgcctatttttcatactgattcgctc |
152 |
Q |
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| T |
32095452 |
caagatttctataaagagaaccaaaggatacaagagtgtgatcctctatttatactaaagctggagagtccctttgcctatttttcatactgattcgctc |
32095551 |
T |
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| Q |
153 |
acaacttgtgtcttactcaatgcttagtgctccactcaatttttaagcaagttacaagattaaatattcactaaaacaaaatcttacacattcataagag |
252 |
Q |
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| T |
32095552 |
acaacttgtgtcttactcaatgcttagtgctccactcaatttttaagcaagttacaagattaaatattcactaaaacaaaatcttacacattcataagag |
32095651 |
T |
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| Q |
253 |
tcttcgtctttcactttatgaattaccttctaattacatctccaaattggtgcaccatctctctgcagtcctgaattaccggttccatctgagtctgcac |
352 |
Q |
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| T |
32095652 |
tcttcgtctttcactttatgaattaccttctaattacatctccaaattggtgcaccatctctctgcagtcctgaattaccggttccatctgagtctgcac |
32095751 |
T |
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| Q |
353 |
aagttaaccatttcatttcagtaaacaaaaattcaaatccatgagatggggcacatggtgatccaacaccgtaattctataaatatattagctctttaac |
452 |
Q |
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| T |
32095752 |
aagttaaccatttcatttcagtaaacaaaaattcaaatccatgagatggggcacatggtgatccaacaccgtaattctataaatatattagctctttaac |
32095851 |
T |
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| Q |
453 |
taatacaggcttgatacaatggccaagatacgaccgactaccaccaaatagtgccaataataaatcaaaattggagtaactaattatacagtaatcttaa |
552 |
Q |
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| T |
32095852 |
taatacaggcttgatacaatgaccaagatacgaccgactaccaccaaatagtgccaataataaatcaaaattggagtaactaattatacagtaatcttaa |
32095951 |
T |
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| Q |
553 |
ccaagaccaagcattggatataaaatgaaattcctaactaactaccatgaatagctaaatacgaag |
618 |
Q |
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| T |
32095952 |
ccaagaccaagcattggatataaaatgaaattcctaactaactaccatgaatagctaaatacgaag |
32096017 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 149; E-Value: 2e-78
Query Start/End: Original strand, 77 - 297
Target Start/End: Original strand, 32089576 - 32089795
Alignment:
| Q |
77 |
aggatacaagagtgtgatcctctatttatactaaagctggagagtccctttgcctatttttcatactgattcgctcacaacttgtgtcttactcaatgct |
176 |
Q |
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| T |
32089576 |
aggatacaagagtgtgatcctctatttaaactaaagctggagtgtccctttccctatttttcataatgattcactcacaatttgtgtcttactcgatgct |
32089675 |
T |
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| Q |
177 |
tagtgctccactcaatttttaagcaagttacaagattaaatattcactaaaacaaaatcttacacattcataagagtcttcgtctttcactttatgaatt |
276 |
Q |
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| T |
32089676 |
tagtgctgcagttaatttttaagcaagttaaaagattaaatatccactaaaacaaaatcttacgcatccataagagtcttcatctttcac-atatgaatt |
32089774 |
T |
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| Q |
277 |
accttctaattacatctccaa |
297 |
Q |
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| T |
32089775 |
accttctaattacatctccaa |
32089795 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 144; E-Value: 2e-75
Query Start/End: Original strand, 427 - 614
Target Start/End: Original strand, 32091741 - 32091928
Alignment:
| Q |
427 |
ttctataaatatattagctctttaactaatacaggcttgatacaatggccaagatacgaccgactaccaccaaatagtgccaataataaatcaaaattgg |
526 |
Q |
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| T |
32091741 |
ttctataattatattagctctttaacaaatacaggcttgatacattgaccaagatacgaccgactaccaccaaatagttgcaataataaatcaacattgg |
32091840 |
T |
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| Q |
527 |
agtaactaattatacagtaatcttaaccaagaccaagcattggatataaaatgaaattcctaactaactaccatgaatagctaaatac |
614 |
Q |
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| T |
32091841 |
agtaactaattatgcagtaatcttaaccaagaccaagcattggttataaaatgaatttcctaactaaccaccatgaatagctaaatac |
32091928 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 338 - 437
Target Start/End: Original strand, 32091611 - 32091717
Alignment:
| Q |
338 |
catctgagtctgcacaagttaaccatttcatttcagtaaacaaaaattcaaatccatgagatgggg-------cacatggtgatccaacaccgtaattct |
430 |
Q |
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| T |
32091611 |
catctgagtctacacaggttaaccatttcatttcagtaaacaaaaattcaaatccatgagatagggcacatgccacatggtgatccaacaccgtaattct |
32091710 |
T |
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| Q |
431 |
ataaata |
437 |
Q |
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| T |
32091711 |
ataaata |
32091717 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 7 - 53
Target Start/End: Original strand, 32095382 - 32095428
Alignment:
| Q |
7 |
aagatgcaattcagatattcatcagacagaataaattaattaacaac |
53 |
Q |
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| T |
32095382 |
aagatgcaattcagatattcatcagacagaataaattaattaacaac |
32095428 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 547 - 614
Target Start/End: Complemental strand, 29887882 - 29887815
Alignment:
| Q |
547 |
tcttaaccaagaccaagcattggatataaaatgaaattcctaactaactaccatgaatagctaaatac |
614 |
Q |
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| T |
29887882 |
tcttaaccaataccaagcattagatatattatgaaattcctatgtaaccaccatgaatagctaaatac |
29887815 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 408 - 443
Target Start/End: Original strand, 29427872 - 29427907
Alignment:
| Q |
408 |
tggtgatccaacaccgtaattctataaatatattag |
443 |
Q |
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| T |
29427872 |
tggtgatccaacaccgtaattctattaatatattag |
29427907 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 531 - 600
Target Start/End: Original strand, 29428029 - 29428098
Alignment:
| Q |
531 |
actaattatacagtaatcttaaccaagaccaagcattggatataaaatgaaattcctaactaactaccat |
600 |
Q |
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| T |
29428029 |
actaattttacagcaatcttaacaaataacaagcattgaatatattatgaatttcctaactaacaaccat |
29428098 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 49; Significance: 1e-18; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 491 - 614
Target Start/End: Complemental strand, 41746642 - 41746516
Alignment:
| Q |
491 |
taccaccaaatagtgccaataataaatcaaaattggagtaactaattatacagtaatcttaaccaagaccaagcat---tggatataaaatgaaattcct |
587 |
Q |
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| T |
41746642 |
taccaccaagtagttgcagtaataaatcaacattggagtaactaattatacaataatcttaacctaaaccaagcataactggatatattatgaaatacct |
41746543 |
T |
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| Q |
588 |
aactaactaccatgaatagctaaatac |
614 |
Q |
| |
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|| |||| |||| |||||||||||| |
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| T |
41746542 |
aagtaaccaccacatatagctaaatac |
41746516 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 355 - 432
Target Start/End: Complemental strand, 41746796 - 41746719
Alignment:
| Q |
355 |
gttaaccatttcatttcagtaaacaaaaattcaaatccatgagatggggcacatggtgatccaacaccgtaattctat |
432 |
Q |
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||||| ||||||||||||||| |||||| ||||||| | ||| |||| |||||||||||||| |||| |||||||||| |
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| T |
41746796 |
gttaaacatttcatttcagtatacaaaagttcaaatacgtgaaatggagcacatggtgatccgacactgtaattctat |
41746719 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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