View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1732-Insertion-14 (Length: 641)
Name: NF1732-Insertion-14
Description: NF1732
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1732-Insertion-14 |
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Alignment Details
Target: chr7 (Bit Score: 226; Significance: 1e-124; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 8 - 245
Target Start/End: Original strand, 33495405 - 33495642
Alignment:
| Q |
8 |
gtgctcttctccatggtgtccttccttgtggtctccatgaccaaatccatgttgctctcctttgtgctcaccaccatgtcctcctacaaatccatgttgt |
107 |
Q |
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| T |
33495405 |
gtgctcttccccatggtgtccttccttgtggtctccatgaccaaatccatgttgctctcctttgtgctcaccaccatgtcctcctacaaatccatgttgt |
33495504 |
T |
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| Q |
108 |
tctcctttgtactcaccatggtgttctcttcctacatgtccatgttgttctcctttgtgttctccctctttcttgtctcctcctatgtgaagggcatcac |
207 |
Q |
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| T |
33495505 |
tctcctttgtactcaccgtggtgttctcctcctacatgtccatgttgttctcctttgtgttctccctctttcttgtctcctcctatgtgaagggcatcac |
33495604 |
T |
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| Q |
208 |
caatcttgttcatgattccagccatattgtatatctat |
245 |
Q |
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| T |
33495605 |
caatcttgttcatgattccagccatattgtatatctat |
33495642 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 139; E-Value: 2e-72
Query Start/End: Original strand, 307 - 485
Target Start/End: Original strand, 33495704 - 33495882
Alignment:
| Q |
307 |
atactaaggagatgatcaatggtatttataggcttataagtgaaggacaaaaacaaaaacaatccacaccatttatgtggtaatgactaaaataaccatg |
406 |
Q |
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| T |
33495704 |
atactaaggagatgatcaatggtatttataggcttataagtgaaggacaaaaacaaaaacaatccacaccatttatgtggaaatgactaaaataaccatg |
33495803 |
T |
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| Q |
407 |
gacgtgtcctctatacgtgtgtaattgtattaattannnnnnnnnnnngaaaaagattgtctgattaaaaataggcatc |
485 |
Q |
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| T |
33495804 |
gacgtgtcctctatacgtgtgtaattgtattaattatttttcttttttgaaaaagattgtctgattaaaaataggcatc |
33495882 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 575 - 609
Target Start/End: Original strand, 33495955 - 33495989
Alignment:
| Q |
575 |
gtatattttaattggcatttagtcttagaatgatt |
609 |
Q |
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| T |
33495955 |
gtatattttaattggcatttagtcttagaatgatt |
33495989 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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