View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1732-Insertion-15 (Length: 511)
Name: NF1732-Insertion-15
Description: NF1732
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1732-Insertion-15 |
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Alignment Details
Target: chr7 (Bit Score: 339; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 339; E-Value: 0
Query Start/End: Original strand, 8 - 354
Target Start/End: Complemental strand, 17859854 - 17859508
Alignment:
| Q |
8 |
cattgaacccacaaatggcagaggcattgatctgtgcacaaaattggttgaaacccactttgaatcaattcaaagacctcaacataaatgaggaatttga |
107 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17859854 |
cattgaacccacaaatggcagaggcattgatctgtgcacaaaattggttgaaacccactttgaatcaattcaaagacctcaacataaatgaggaatttga |
17859755 |
T |
|
| Q |
108 |
gttgtctgccactgttgtatcaggtatttaatatgtttattttaacttttaaatgtgtggcatttattcttgtttaaatgccattaactaatcatattgc |
207 |
Q |
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| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17859754 |
gctgtctgccactgttgtatcaggtatttaatatgtttattttaacttttaaatgtgtggcatttattcttgtttaaatgccattaactaatcatattgc |
17859655 |
T |
|
| Q |
208 |
ttggtccttgtatttgtatatagaatttgatggaccatcagctaatggatcaacatcttgtggtgttagagcagctgttgtacaaggagatgcatcatca |
307 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17859654 |
ttggtccttgtatttgtatatagaatttgatggaccatcagctaatggatcaacatcttgtggtgttagagcagctgttgtacaaggagatgcatcatca |
17859555 |
T |
|
| Q |
308 |
tctcaatcacaaccaatgagctgtgattgaaaaaactagtgttagtg |
354 |
Q |
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||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
17859554 |
tctcaatcacagccaatgagctgtgattgaaaaaactagtgttagtg |
17859508 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 451 - 511
Target Start/End: Complemental strand, 17859411 - 17859351
Alignment:
| Q |
451 |
caggttcttaacccttttttggtgtcattaatcataatgattaatgactttgcttagtgca |
511 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17859411 |
caggttcttaacccttttttggtgtcattaatcataatgattaatgactttgcttagtgca |
17859351 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 331; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 8 - 354
Target Start/End: Original strand, 34915958 - 34916304
Alignment:
| Q |
8 |
cattgaacccacaaatggcagaggcattgatctgtgcacaaaattggttgaaacccactttgaatcaattcaaagacctcaacataaatgaggaatttga |
107 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34915958 |
cattgaacccacaaatggcagaggcattgatctgtgcacaaaattggttgaaacccactttgaatcaattcaaagacctcaacataaatgaggaatttga |
34916057 |
T |
|
| Q |
108 |
gttgtctgccactgttgtatcaggtatttaatatgtttattttaacttttaaatgtgtggcatttattcttgtttaaatgccattaactaatcatattgc |
207 |
Q |
| |
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| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34916058 |
gctgtctaccactgttgtatcaggtatttaatatgtttattttaacttttaaatgtgtggcatttattcttgtttaaatgccattaactaatcatattgc |
34916157 |
T |
|
| Q |
208 |
ttggtccttgtatttgtatatagaatttgatggaccatcagctaatggatcaacatcttgtggtgttagagcagctgttgtacaaggagatgcatcatca |
307 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34916158 |
ttggtccttgtatttgtatatagaatttgatggaccatcagctaatggatcaacatcttgtggtgttagagcagctgttgtacaaggagatgcatcatca |
34916257 |
T |
|
| Q |
308 |
tctcaatcacaaccaatgagctgtgattgaaaaaactagtgttagtg |
354 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||| |||||||| |
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| T |
34916258 |
tctcaatcacagccaatgagctgtgattgaaaaaactaatgttagtg |
34916304 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 451 - 511
Target Start/End: Original strand, 34916401 - 34916461
Alignment:
| Q |
451 |
caggttcttaacccttttttggtgtcattaatcataatgattaatgactttgcttagtgca |
511 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
34916401 |
caggttcttaacccttttttggtgtcattaatcataatgattaatgactttgcttagtgca |
34916461 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 331; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 8 - 354
Target Start/End: Complemental strand, 4968385 - 4968039
Alignment:
| Q |
8 |
cattgaacccacaaatggcagaggcattgatctgtgcacaaaattggttgaaacccactttgaatcaattcaaagacctcaacataaatgaggaatttga |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4968385 |
cattgaacccacaaatggcagaggcattgatctgtgcacaaaattggttgaaacccactttgaatcaattcaaagacctcaacataaatgaggaatttga |
4968286 |
T |
|
| Q |
108 |
gttgtctgccactgttgtatcaggtatttaatatgtttattttaacttttaaatgtgtggcatttattcttgtttaaatgccattaactaatcatattgc |
207 |
Q |
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| T |
4968285 |
gctgtctgccactgttgtatcaggtatttaatatgtttattttaacttttaaatgtgtggcatttattcttgtttaaatgccattaactaatcatattgt |
4968186 |
T |
|
| Q |
208 |
ttggtccttgtatttgtatatagaatttgatggaccatcagctaatggatcaacatcttgtggtgttagagcagctgttgtacaaggagatgcatcatca |
307 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
4968185 |
ttggtccttgtatttgtatatagaatttgatggaccatcagctaatggatcaacatcttgtggttttagagcagctgttgtacaaggagatgcatcatca |
4968086 |
T |
|
| Q |
308 |
tctcaatcacaaccaatgagctgtgattgaaaaaactagtgttagtg |
354 |
Q |
| |
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||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
4968085 |
tctcaatcacagccaatgagctgtgattgaaaaaactagtgttagtg |
4968039 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 451 - 511
Target Start/End: Complemental strand, 4967942 - 4967882
Alignment:
| Q |
451 |
caggttcttaacccttttttggtgtcattaatcataatgattaatgactttgcttagtgca |
511 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
4967942 |
caggttcttaacccttttttggtgtcattaatcataatgattaatgactttgcttagtgca |
4967882 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 20 - 62
Target Start/End: Complemental strand, 16298791 - 16298749
Alignment:
| Q |
20 |
aaatggcagaggcattgatctgtgcacaaaattggttgaaacc |
62 |
Q |
| |
|
|||||||||||||||| |||||| | ||||||||||||||||| |
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|
| T |
16298791 |
aaatggcagaggcattaatctgtacccaaaattggttgaaacc |
16298749 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 20 - 62
Target Start/End: Complemental strand, 22896287 - 22896245
Alignment:
| Q |
20 |
aaatggcagaggcattgatctgtgcacaaaattggttgaaacc |
62 |
Q |
| |
|
|||||||||||||||| |||||| | ||||||||||||||||| |
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|
| T |
22896287 |
aaatggcagaggcattaatctgtacccaaaattggttgaaacc |
22896245 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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