View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1732-Insertion-16 (Length: 597)
Name: NF1732-Insertion-16
Description: NF1732
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1732-Insertion-16 |
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Alignment Details
Target: chr1 (Bit Score: 499; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 499; E-Value: 0
Query Start/End: Original strand, 7 - 569
Target Start/End: Original strand, 6994438 - 6994997
Alignment:
| Q |
7 |
atcaatcaccatctgatgagcactgaggaggtgtgacagtatccacttgtgtcttaacacgtagaattttcaaaggagaaatcaattttaagatgttatt |
106 |
Q |
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| T |
6994438 |
atcaatcaccatctgatgagcactgagg---tgtgacagtatccacttgtgtcttaacacgtagaattttcaaaggagaaatcaattttaagatgttatt |
6994534 |
T |
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| Q |
107 |
gttattaaaaagcattcatgatttcatatattcatacataggaaagttacataatgccaccattagtttggtccaaaatgctatttagtttttatgttgg |
206 |
Q |
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| T |
6994535 |
gttattaaaaagcactcatgctttcatatattcatacataggaaagttatataatgccaccattagtttggtccaaaatgctatttagtttttatgttgg |
6994634 |
T |
|
| Q |
207 |
aaaatacttgtgtgaatttgaccgtacaaaatttcgtctgttgagttgataatatcttctttgattaattaatgtgcgtataaaccgtgtatccccataa |
306 |
Q |
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| T |
6994635 |
aaaatacttgtgtgaatttgaccgtacaaaatttcgtctgttgagttgataatatcttctttgattaattaatgtgcgtataaaccgtgtatccccataa |
6994734 |
T |
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| Q |
307 |
tattcaatcgtattcttctctagaaaaaatatactcatattcaatcctaacttcaattgataaccaattttaactaccagaacgtgacgtttatgatgga |
406 |
Q |
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| T |
6994735 |
tattcaatcgtattcttctctagaaaaaatatactaatattcaatcctaacttcaattgataaccaattttaactaccagaacgtgacgtttatgatgga |
6994834 |
T |
|
| Q |
407 |
ggttccaacttttattgtacacgtatttttcctgctcctacctctctctacctatattgttgtatcttaatgcacacacattcgaaagaataaccaaata |
506 |
Q |
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| T |
6994835 |
ggttccaacttttattgtacacgtatttttcctgctcctacctctctctacctatattgttgtatcttaatgcacacacattcgaaagaataaccaaata |
6994934 |
T |
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| Q |
507 |
aatactacaggttccctnnnnnnnnnntatactagcagtatttaggttagatatgtttttgtt |
569 |
Q |
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| T |
6994935 |
aatactactggttccctaaaaaaaaaatatactagcagtatttaggttagatatgtttttgtt |
6994997 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 558 - 597
Target Start/End: Original strand, 6995011 - 6995050
Alignment:
| Q |
558 |
tatgtttttgttcctaacaaaatatctctccctcaattgt |
597 |
Q |
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| T |
6995011 |
tatgtttttgttcctaacaaaatatctctccctcaattgt |
6995050 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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