View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1732-Insertion-17 (Length: 476)

Name: NF1732-Insertion-17
Description: NF1732
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1732-Insertion-17
NF1732-Insertion-17
[»] chr4 (8 HSPs)
chr4 (8-476)||(20245475-20245943)
chr4 (114-276)||(11420038-11420199)
chr4 (156-276)||(21809641-21809759)
chr4 (156-259)||(47575967-47576070)
chr4 (115-269)||(19053534-19053687)
chr4 (156-276)||(11449114-11449234)
chr4 (135-214)||(22222328-22222407)
chr4 (113-206)||(8677194-8677286)
[»] chr1 (22 HSPs)
chr1 (113-274)||(31583991-31584152)
chr1 (113-278)||(1812419-1812584)
chr1 (113-275)||(14580308-14580470)
chr1 (115-276)||(17103012-17103173)
chr1 (108-240)||(12398112-12398243)
chr1 (113-276)||(34188112-34188275)
chr1 (157-252)||(41029651-41029746)
chr1 (8-103)||(49642812-49642907)
chr1 (272-397)||(15440819-15440944)
chr1 (158-275)||(43282136-43282252)
chr1 (113-231)||(10751509-10751630)
chr1 (112-214)||(15650710-15650811)
chr1 (115-269)||(33439246-33439399)
chr1 (272-427)||(17087916-17088072)
chr1 (113-188)||(15787385-15787459)
chr1 (223-276)||(30805599-30805652)
chr1 (156-204)||(17087799-17087847)
chr1 (113-201)||(17496277-17496364)
chr1 (405-476)||(1812706-1812777)
chr1 (178-232)||(18129680-18129734)
chr1 (113-182)||(15441619-15441688)
chr1 (178-231)||(18615297-18615350)
[»] chr8 (14 HSPs)
chr8 (112-270)||(7320994-7321152)
chr8 (113-276)||(18527743-18527906)
chr8 (113-260)||(12863735-12863882)
chr8 (156-259)||(25724323-25724426)
chr8 (116-259)||(28890622-28890764)
chr8 (156-274)||(24276863-24276981)
chr8 (8-103)||(15191375-15191470)
chr8 (390-464)||(28800732-28800806)
chr8 (174-275)||(24122100-24122201)
chr8 (113-274)||(23584547-23584706)
chr8 (113-198)||(24502345-24502430)
chr8 (156-276)||(28800450-28800568)
chr8 (119-259)||(24308520-24308659)
chr8 (131-206)||(6587137-6587213)
[»] chr2 (17 HSPs)
chr2 (113-271)||(15375921-15376080)
chr2 (113-276)||(16586558-16586720)
chr2 (156-276)||(23959684-23959804)
chr2 (113-276)||(22268996-22269158)
chr2 (185-258)||(17569250-17569323)
chr2 (113-206)||(18848741-18848833)
chr2 (113-206)||(29410056-29410148)
chr2 (113-198)||(42256589-42256674)
chr2 (115-250)||(35665775-35665910)
chr2 (112-182)||(26654307-26654376)
chr2 (113-188)||(21547870-21547944)
chr2 (135-206)||(22311203-22311274)
chr2 (159-206)||(25916223-25916270)
chr2 (113-206)||(18038716-18038810)
chr2 (156-204)||(13074117-13074165)
chr2 (113-177)||(17568416-17568480)
chr2 (156-275)||(19877736-19877856)
[»] chr6 (13 HSPs)
chr6 (113-276)||(26238926-26239089)
chr6 (113-276)||(10814379-10814543)
chr6 (122-275)||(6560493-6560646)
chr6 (159-250)||(22562392-22562483)
chr6 (123-276)||(17146173-17146326)
chr6 (113-198)||(24576166-24576251)
chr6 (116-264)||(21747376-21747524)
chr6 (112-257)||(17291853-17291998)
chr6 (156-188)||(10821500-10821532)
chr6 (116-276)||(29032315-29032475)
chr6 (131-232)||(12394826-12394928)
chr6 (135-192)||(30701105-30701162)
chr6 (277-356)||(26238819-26238899)
[»] chr3 (18 HSPs)
chr3 (113-276)||(9796483-9796646)
chr3 (113-276)||(14426868-14427030)
chr3 (113-250)||(4767319-4767455)
chr3 (113-276)||(38075987-38076150)
chr3 (114-259)||(17034102-17034248)
chr3 (156-269)||(4514995-4515108)
chr3 (113-278)||(17637130-17637295)
chr3 (156-274)||(17119341-17119460)
chr3 (156-274)||(4244316-4244434)
chr3 (156-206)||(11045006-11045056)
chr3 (113-215)||(13291322-13291423)
chr3 (112-201)||(5638289-5638378)
chr3 (8-103)||(53976393-53976488)
chr3 (156-206)||(20311367-20311417)
chr3 (156-201)||(14328693-14328738)
chr3 (277-400)||(5638492-5638616)
chr3 (159-202)||(14332670-14332713)
chr3 (113-192)||(24112995-24113074)
[»] chr5 (4 HSPs)
chr5 (108-276)||(26335188-26335356)
chr5 (272-426)||(17337866-17338020)
chr5 (113-206)||(24492050-24492142)
chr5 (113-188)||(25935899-25935974)
[»] chr7 (14 HSPs)
chr7 (113-276)||(956877-957040)
chr7 (156-274)||(19143885-19144003)
chr7 (156-274)||(20743284-20743402)
chr7 (157-276)||(10646486-10646605)
chr7 (113-206)||(12341684-12341777)
chr7 (113-276)||(8105967-8106129)
chr7 (113-258)||(11608781-11608926)
chr7 (156-276)||(17891059-17891179)
chr7 (113-275)||(24865717-24865879)
chr7 (113-229)||(26822654-26822770)
chr7 (156-206)||(7185284-7185334)
chr7 (223-259)||(5265595-5265631)
chr7 (113-232)||(9803517-9803636)
chr7 (156-184)||(10983396-10983424)
[»] scaffold0804 (1 HSPs)
scaffold0804 (115-275)||(27-187)
[»] scaffold0164 (2 HSPs)
scaffold0164 (8-103)||(18504-18599)
scaffold0164 (8-103)||(28884-28979)
[»] scaffold0003 (1 HSPs)
scaffold0003 (122-264)||(319040-319182)


Alignment Details
Target: chr4 (Bit Score: 397; Significance: 0; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 397; E-Value: 0
Query Start/End: Original strand, 8 - 476
Target Start/End: Complemental strand, 20245943 - 20245475
Alignment:
Q  8 ggaatcattgcaacatgcttgtgcatttttggattatgagctctatcgaagaatccattgcactaagcattgtgttccttaaaaatgaaattgatgcatc 107  Q
    |||||||||||||||||||| |||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||     
T  20245943 ggaatcattgcaacatgcttatgcattcttggattatgagctcgatcgaagaatccattgcactaagcattgtgttccttaaaaatgaaattgatgtatg 20245844  T
Q  108 taatgtgttggaacaaaattggatttatacaatgcctctgatgctttcatgataacaaagtattgaagaacaattagatatgctagtatatgtttaagtt 207  Q
    |||||||||||||||||||||||||| |||||||||||||||| ||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  20245843 taatgtgttggaacaaaattggatttgtacaatgcctctgatgttttgatgataacaaagtattgaagaacaattggatatgctagtatatgtttaagtt 20245744  T
Q  208 tgtaggactatggactaaaatttatcaaggtctaaacatgtatgagagcatctgaagaacaagagaagcaaggtcaatcagaagtcaacatgtgattaaa 307  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| | |    
T  20245743 tgtaggactatggactaaaatttatcaaggtctaaacatgtatgagagcatctgaagaacaagacaagcaaggtcaatcagaagtcaacatgtgatcaga 20245644  T
Q  308 tgtgaagaatccatccagaagctactaaaggccatactttgaatcatcaaactctgcgtcacccaaactctaagtcacccagactctgagttattcggac 407  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||    
T  20245643 tgtgaagaatccatccagaagctactaaaggccagactttgaatcatcaaactctgagtcacccaaactctaagtcacccagactctgagttatccggac 20245544  T
Q  408 tctgaggacttagaagccacatcatatttgtcttcttctaaaaagggtcactttcagaatctaaccaag 476  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||| ||||||    
T  20245543 tctgaggacttagaagccacatcatatttgtcttcttctaagaagggtcactttcaggatctgaccaag 20245475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 114 - 276
Target Start/End: Complemental strand, 11420199 - 11420038
Alignment:
Q  114 gttggaacaaaattggatttatacaatgcctctgatgctttcatgataacaaagtattgaagaacaattagatatgctagtatatgtttaagtttgtagg 213  Q
    ||||||||||||||  |||| |||||| ||||| | | ||| ||||||||||| |||| |||||||||| |||||| || |||||||| |||| |  |||    
T  11420199 gttggaacaaaatta-atttgtacaattcctctaaggttttgatgataacaaaatattaaagaacaattggatatgataatatatgttcaagtgtaaagg 11420101  T
Q  214 actatggactaaaatttatcaaggtctaaacatgtatgagagcatctgaagaacaagagaagc 276  Q
    || ||  | ||||||||| |||||||| ||||||||| ||| |||| |||| | |||||||||    
T  11420100 accatatattaaaatttaacaaggtctgaacatgtataagaacatcagaagtagaagagaagc 11420038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 156 - 276
Target Start/End: Original strand, 21809641 - 21809759
Alignment:
Q  156 atgataacaaagtattgaagaacaattagatatgctagtatatgtttaagtttgtaggactatggactaaaatttatcaaggtctaaacatgtatgagag 255  Q
    ||||||||||| |||| || ||||||| ||||||||| ||||||||||||| |||| ||| ||  | ||||| ||| |||||||| ||||||||  ||||    
T  21809641 atgataacaaaatattaaaaaacaattggatatgctaatatatgtttaagtgtgtaagacaattaattaaaacttaacaaggtctgaacatgta--agag 21809738  T
Q  256 catctgaagaacaagagaagc 276  Q
    ||||||||| |||| ||||||    
T  21809739 catctgaagcacaaaagaagc 21809759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 156 - 259
Target Start/End: Complemental strand, 47576070 - 47575967
Alignment:
Q  156 atgataacaaagtattgaagaacaattagatatgctagtatatgtttaagtttgtaggactatggactaaaatttatcaaggtctaaacatgtatgagag 255  Q
    |||||||||||||||| ||||||| ||  |||||||| |||||||| |||| | ||||| |||  | ||||||||| ||| |||| ||||||||| ||||    
T  47576070 atgataacaaagtattaaagaacacttgaatatgctaatatatgttcaagtgtataggattataaattaaaatttaacaaagtctgaacatgtataagag 47575971  T
Q  256 catc 259  Q
    ||||    
T  47575970 catc 47575967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 115 - 269
Target Start/End: Complemental strand, 19053687 - 19053534
Alignment:
Q  115 ttggaacaaaattggatttatacaatgcctctgatgctttcatgataacaaa-gtattgaagaacaattagatatgctagtatatgtttaagtttgtagg 213  Q
    ||||||||||||||| ||| | |||| |||||   | ||| ||||||||||| ||||| |||||||||||||||||||| |||||||| |||| ||  ||    
T  19053687 ttggaacaaaattgg-tttgttcaattcctctagagttttgatgataacaaaagtatt-aagaacaattagatatgctaatatatgttcaagtgtgctgg 19053590  T
Q  214 actatggactaaaatttatcaaggtctaaacatgtatgagagcatctgaagaacaa 269  Q
    || ||  | ||||||||| |||||||| || || ||| |||||||| |||| ||||    
T  19053589 accataaattaaaatttaacaaggtctgaaaatatataagagcatcagaagcacaa 19053534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 156 - 276
Target Start/End: Original strand, 11449114 - 11449234
Alignment:
Q  156 atgataacaaagtattgaagaacaattagatatgctagtatatgtttaagtttgtaggactatggactaaaatttatcaaggtctaaacatgtatgagag 255  Q
    ||||||||| | ||||||||||||||| || ||| || |||||||| |||| || ||||| ||  | |||||||||  ||||||| ||||||||  ||||    
T  11449114 atgataacacaatattgaagaacaattggacatgttaatatatgttcaagtgtgcaggaccatatattaaaatttaataaggtctgaacatgtaaaagag 11449213  T
Q  256 catctgaagaacaagagaagc 276  Q
    ||||  ||| | |||||||||    
T  11449214 catcaaaagcataagagaagc 11449234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 135 - 214
Target Start/End: Original strand, 22222328 - 22222407
Alignment:
Q  135 tacaatgcctctgatgctttcatgataacaaagtattgaagaacaattagatatgctagtatatgtttaagtttgtagga 214  Q
    |||||| ||||| | | ||| ||||||||||||||||||||||||| | || || ||| |||||||| |||| |||||||    
T  22222328 tacaattcctctaaggttttgatgataacaaagtattgaagaacaagtggacatactaatatatgttcaagtgtgtagga 22222407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 113 - 206
Target Start/End: Original strand, 8677194 - 8677286
Alignment:
Q  113 tgttggaacaaaattggatttatacaatgcctctgatgctttcatgataacaaagtattgaagaacaattagatatgctagtatatgtttaagt 206  Q
    ||||||||||||||||| ||| |||||| |||||   | ||| |||||||||||||||| || |||||||  ||||| || |||||||| ||||    
T  8677194 tgttggaacaaaattgg-tttgtacaattcctctagagttttgatgataacaaagtattaaaaaacaattgaatatgttaatatatgttcaagt 8677286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 78; Significance: 4e-36; HSPs: 22)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 113 - 274
Target Start/End: Original strand, 31583991 - 31584152
Alignment:
Q  113 tgttggaacaaaattggatttatacaatgcctctgatgctttcatgataacaaagtattgaagaacaattagatatgctagtatatgtttaagtttgtag 212  Q
    ||||||||||||||||| ||| |||||||||||||||| ||| |||||||||||||||||||||| |||| |||||| || ||  || |||||| || ||    
T  31583991 tgttggaacaaaattggttttgtacaatgcctctgatgttttgatgataacaaagtattgaagaataattggatatgttaatacgtgcttaagtgtgcag 31584090  T
Q  213 gactatggactaaaatttatcaaggtctaaacatgtatgagagcatctgaagaacaagagaa 274  Q
    ||| || || |||||||||||||||||| | ||| |||||||||||| |||| |||||||||    
T  31584091 gaccatagattaaaatttatcaaggtctgagcatatatgagagcatcagaagcacaagagaa 31584152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 113 - 278
Target Start/End: Original strand, 1812419 - 1812584
Alignment:
Q  113 tgttggaacaaaattggatttatacaatgcctctgatgctttcatgataacaaagtattgaagaacaattagatatgctagtatatgtttaagtttgtag 212  Q
    ||||||||||||||| ||||| ||||||| |||| |   ||| || |||||||||||| ||| ||||||   |||||||| ||||||||||||| || |     
T  1812419 tgttggaacaaaattagatttgtacaatgtctctaaaattttgattataacaaagtatcgaaaaacaatcgaatatgctaatatatgtttaagtgtgcat 1812518  T
Q  213 gactatggactaaaatttatcaaggtctaaacatgtatgagagcatctgaagaacaagagaagcaa 278  Q
    ||| ||  | |||||||||||||||||||||||| ||||||||||| ||||| |||||||||||||    
T  1812519 gaccataaattaaaatttatcaaggtctaaacatatatgagagcatatgaagcacaagagaagcaa 1812584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 113 - 275
Target Start/End: Original strand, 14580308 - 14580470
Alignment:
Q  113 tgttggaacaaaattggatttatacaatgcctctgatgctttcatgataacaaagtattgaagaacaattagatatgctagtatatgtttaagtttgtag 212  Q
    ||||||||||||||||||||| | |||||||| | |   ||| |||||||||||||||| ||||||||||||||||| || |||||||| |||  || ||    
T  14580308 tgttggaacaaaattggatttgtccaatgcctttaaaattttgatgataacaaagtattaaagaacaattagatatgttaatatatgttcaagagtgcag 14580407  T
Q  213 gactatggactaaaatttatcaaggtctaaacatgtatgagagcatctgaagaacaagagaag 275  Q
    ||   | || ||||||||| ||||||||||| |||||| | |||| | |||| ||||||||||    
T  14580408 gatcttagattaaaatttaacaaggtctaaatatgtataaaagcaccagaagcacaagagaag 14580470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 115 - 276
Target Start/End: Original strand, 17103012 - 17103173
Alignment:
Q  115 ttggaacaaaattggatttatacaatgcctctgatgctttcatgataacaaagtattgaagaacaattagatatgctagtatatgtttaagtttgtagga 214  Q
    ||||||||||| ||| ||| |||||| ||||||| | ||| ||||||||||| |||| |||| |||||  |||| ||| |||||||| | || || ||||    
T  17103012 ttggaacaaaaatggttttgtacaattcctctgaagttttgatgataacaaaatattaaagagcaattgaatatcctaatatatgttcacgtatgcagga 17103111  T
Q  215 ctatggactaaaatttatcaaggtctaaacatgtatgagagcatctgaagaacaagagaagc 276  Q
    | ||  | ||||||||| |||| ||| ||||||||| |||||||| ||||||||||||||||    
T  17103112 ccatatattaaaatttaacaagttctgaacatgtataagagcatcagaagaacaagagaagc 17103173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 108 - 240
Target Start/End: Complemental strand, 12398243 - 12398112
Alignment:
Q  108 taatgtgttggaacaaaattggatttatacaatgcctctgatgctttcatgataacaaagtattgaagaacaattagatatgctagtatatgtttaagtt 207  Q
    |||| ||| ||||||||||||| ||| |||||| ||||| | | ||| ||||||| |||||||||||||| ||||  |||||||| |||||||| ||||     
T  12398243 taatatgtcggaacaaaattgg-tttgtacaattcctctaaagttttgatgataataaagtattgaagaataattgaatatgctaatatatgttcaagtg 12398145  T
Q  208 tgtaggactatggactaaaatttatcaaggtct 240  Q
    || | |||||| || ||||||||| ||||||||    
T  12398144 tgcatgactatagattaaaatttaacaaggtct 12398112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 113 - 276
Target Start/End: Complemental strand, 34188275 - 34188112
Alignment:
Q  113 tgttggaacaaaattggatttatacaatgcctctgatgctttcatgataacaaagtattgaagaacaattagatatgctagtatatgtttaagtttgtag 212  Q
    ||||| || ||||||  |||| |||||||||| ||| | ||| ||||||||||||||||||| |||||||  |||||||| |||||||||| |  || ||    
T  34188275 tgttgtaagaaaattaaatttgtacaatgcctttgaagttttgatgataacaaagtattgaaaaacaattgaatatgctaatatatgtttacgcgtgcag 34188176  T
Q  213 gactatggactaaaatttatcaaggtctaaacatgtatgagagcatctgaagaacaagagaagc 276  Q
    ||| || || || ||||||||||||  | | ||| ||| |||||||  |||| |||||||||||    
T  34188175 gaccatagattataatttatcaaggcttgatcatatataagagcattagaagtacaagagaagc 34188112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 157 - 252
Target Start/End: Complemental strand, 41029746 - 41029651
Alignment:
Q  157 tgataacaaagtattgaagaacaattagatatgctagtatatgtttaagtttgtaggactatggactaaaatttatcaaggtctaaacatgtatga 252  Q
    ||||||||||||| |||||||||||| ||||||||  ||||||||||||| || ||||  ||  | |||||||||||||||||| ||||| |||||    
T  41029746 tgataacaaagtaatgaagaacaattggatatgctgatatatgtttaagtgtgcaggatcataaattaaaatttatcaaggtctgaacatatatga 41029651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 8 - 103
Target Start/End: Complemental strand, 49642907 - 49642812
Alignment:
Q  8 ggaatcattgcaacatgcttgtgcatttttggattatgagctctatcgaagaatccattgcactaagcattgtgttccttaaaaatgaaattgatg 103  Q
    |||||| |||||||||||||||||||| |||||||||||  ||| | ||||| || ||||||| ||||||||| ||||| |||||||  |||||||    
T  49642907 ggaatcgttgcaacatgcttgtgcattcttggattatgaattctgttgaagattcaattgcacaaagcattgttttcctgaaaaatgccattgatg 49642812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 272 - 397
Target Start/End: Complemental strand, 15440944 - 15440819
Alignment:
Q  272 gaagcaaggtcaatcagaagtcaacatgtgattaaatgtgaagaatccatccagaagctactaaaggccatactttgaatcatcaaactctgcgtcaccc 371  Q
    |||| |||||||||||||||||||||  |||| | | ||||||||  |||||||||| |||| ||| ||||| | |||||||||| |||||  |||||||    
T  15440944 gaagaaaggtcaatcagaagtcaacaaatgatcagaagtgaagaagtcatccagaaggtactgaagaccataatatgaatcatcagactctaagtcaccc 15440845  T
Q  372 aaactctaagtcacccagactctgag 397  Q
    | || |  ||||| ||||||||||||    
T  15440844 agaccccgagtcatccagactctgag 15440819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 158 - 275
Target Start/End: Original strand, 43282136 - 43282252
Alignment:
Q  158 gataacaaagtattgaagaacaattagatatgctagtatatgtttaagtttgtaggactatggactaaaatttatcaaggtctaaacatgtatgagagca 257  Q
    ||||||||| ||||||||||||||| | |||| || ||||||||||||| || | ||| ||||| ||||| |||||||| | | | ||| ||| ||||||    
T  43282136 gataacaaaatattgaagaacaattgggtatgataatatatgtttaagtgtgca-gaccatggattaaaacttatcaagttttgagcatatataagagca 43282234  T
Q  258 tctgaagaacaagagaag 275  Q
    ||||||| ||||||||||    
T  43282235 tctgaagcacaagagaag 43282252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 113 - 231
Target Start/End: Complemental strand, 10751630 - 10751509
Alignment:
Q  113 tgttggaacaaaattggatttatacaatgcctctgatgctttcatgataacaaagtattgaagaacaattagat---atgctagtatatgtttaagtttg 209  Q
    ||||| ||||||||| ||||| ||||||| |||| | | ||| |||||||||||||||| |||||||||| |||   |||||| |||||| | |||| ||    
T  10751630 tgttgaaacaaaatttgatttgtacaatgtctctaaagttttgatgataacaaagtattaaagaacaattggatatgatgctaatatatgctcaagtgtg 10751531  T
Q  210 taggactatggactaaaattta 231  Q
     |||||||| || |||||||||    
T  10751530 caggactatagattaaaattta 10751509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 112 - 214
Target Start/End: Original strand, 15650710 - 15650811
Alignment:
Q  112 gtgttggaacaaaattggatttatacaatgcctctgatgctttcatgataacaaagtattgaagaacaattagatatgctagtatatgtttaagtttgta 211  Q
    |||||||||||||||||| ||| |||||| ||||| | | ||| ||||||| ||||||||||||||||||| || |||||| ||| |||| | || ||||    
T  15650710 gtgttggaacaaaattgg-tttgtacaattcctctaaggttttgatgataataaagtattgaagaacaattggacatgctaatatttgttcaggtgtgta 15650808  T
Q  212 gga 214  Q
    |||    
T  15650809 gga 15650811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 115 - 269
Target Start/End: Complemental strand, 33439399 - 33439246
Alignment:
Q  115 ttggaacaaaattggatttatacaatgcctctgatgctttcatgataacaaagtattgaagaacaattagatatgctagtatatgtttaagtttgtagga 214  Q
    ||||||||||||||| ||| |||||| |||||     ||| |||||||||| ||||| |||||||||||||||||||| |||||| | |||| || ||||    
T  33439399 ttggaacaaaattgg-tttgtacaattcctctagaattttgatgataacaaggtattaaagaacaattagatatgctaatatatgatcaagtgtgcagga 33439301  T
Q  215 ctatggactaaaatttatcaaggtctaaacatgtatgagagcatctgaagaacaa 269  Q
    | || || |||| ||||  ||| | | ||||||||| |||||||| |||| ||||    
T  33439300 ccatagattaaattttaaaaagatatgaacatgtataagagcatcagaagcacaa 33439246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 272 - 427
Target Start/End: Original strand, 17087916 - 17088072
Alignment:
Q  272 gaagcaaggtcaatcagaagtcaac-atgtgattaaatgtgaagaatccatccagaagctactaaaggccatactttgaatcatcaaactctgcgtcacc 370  Q
    |||| |||||||| ||||||||||| ||||||| | | | ||||||| |||||| |||||||| ||||||| ||| || | ||||| |||||  ||||||    
T  17087916 gaagaaaggtcaaccagaagtcaacgatgtgatcagaagcgaagaattcatccaaaagctactgaaggccaaactctggaccatcagactcttagtcacc 17088015  T
Q  371 caaactctaagtcacccagactctgagttattcggactctgaggacttagaagccac 427  Q
    || ||||| ||| | | ||||   ||||||| |  ||||||| ||||||||||||||    
T  17088016 cagactctgagttatctagacgacgagttatccatactctgaagacttagaagccac 17088072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 113 - 188
Target Start/End: Original strand, 15787385 - 15787459
Alignment:
Q  113 tgttggaacaaaattggatttatacaatgcctctgatgctttcatgataacaaagtattgaagaacaattagatat 188  Q
    |||||||||||||||| |||| |||||| ||||| | | ||| |||||||||||||||||| |||||||| |||||    
T  15787385 tgttggaacaaaattg-atttgtacaattcctctaaggttttgatgataacaaagtattgacgaacaattggatat 15787459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 223 - 276
Target Start/End: Original strand, 30805599 - 30805652
Alignment:
Q  223 taaaatttatcaaggtctaaacatgtatgagagcatctgaagaacaagagaagc 276  Q
    ||||||||| |||||||||||||||||| |||||||  |||| |||||||||||    
T  30805599 taaaatttaacaaggtctaaacatgtataagagcatgagaagcacaagagaagc 30805652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 156 - 204
Target Start/End: Original strand, 17087799 - 17087847
Alignment:
Q  156 atgataacaaagtattgaagaacaattagatatgctagtatatgtttaa 204  Q
    |||| ||||||| ||||||||||||| |||||||||| |||||||||||    
T  17087799 atgaaaacaaaggattgaagaacaatgagatatgctaatatatgtttaa 17087847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 113 - 201
Target Start/End: Original strand, 17496277 - 17496364
Alignment:
Q  113 tgttggaacaaaattggatttatacaatgcctctgatgctttcatgataacaaagtattgaagaacaattagatatgctagtatatgtt 201  Q
    ||||||||||||||||| ||| | ||||  |||| ||| ||| || |||||||||||||||||||||||| ||||| ||| ||| ||||    
T  17496277 tgttggaacaaaattgg-tttgtgcaatttctctaatgttttgataataacaaagtattgaagaacaattggatatactaatatttgtt 17496364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 405 - 476
Target Start/End: Original strand, 1812706 - 1812777
Alignment:
Q  405 gactctgaggacttagaagccacatcatatttgtcttcttctaaaaagggtcactttcagaatctaaccaag 476  Q
    ||||||||| | |||||||||||||||  ||||||||||||||  ||||||| |||| || || ||||||||    
T  1812706 gactctgagaaattagaagccacatcagctttgtcttcttctatgaagggtcgcttttaggatataaccaag 1812777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 178 - 232
Target Start/End: Original strand, 18129680 - 18129734
Alignment:
Q  178 caattagatatgctagtatatgtttaagtttgtaggactatggactaaaatttat 232  Q
    ||||||||||||||| ||| ||||||||| || ||||| || |||||||||||||    
T  18129680 caattagatatgctaatatttgtttaagtgtgcaggaccatagactaaaatttat 18129734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 113 - 182
Target Start/End: Complemental strand, 15441688 - 15441619
Alignment:
Q  113 tgttggaacaaaattggatttatacaatgcctctgatgctttcatgataacaaagtattgaagaacaatt 182  Q
    |||| ||| |||||||||||| || ||||||||| | | ||| ||||||| |||||| ||||||||||||    
T  15441688 tgttagaataaaattggatttgtataatgcctctaaagttttgatgataaaaaagtaatgaagaacaatt 15441619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 178 - 231
Target Start/End: Complemental strand, 18615350 - 18615297
Alignment:
Q  178 caattagatatgctagtatatgtttaagtttgtaggactatggactaaaattta 231  Q
    ||||||||||||||| ||| |||| |||| |||||||| |||||| ||||||||    
T  18615350 caattagatatgctaatatttgttcaagtgtgtaggaccatggacaaaaattta 18615297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 75; Significance: 2e-34; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 112 - 270
Target Start/End: Original strand, 7320994 - 7321152
Alignment:
Q  112 gtgttggaacaaaattggatttatacaatgcctctgatgctttcatgataacaaagtattgaagaacaattagatatgctagtatatgtttaagtttgta 211  Q
    ||||||||||||||||  |||| ||||||| |||||| | ||| ||||||||||||||||||||||| |||  |||||||| ||||||||||||| || |    
T  7320994 gtgttggaacaaaattcaatttttacaatgtctctgaagttttgatgataacaaagtattgaagaactattttatatgctaatatatgtttaagtgtgca 7321093  T
Q  212 ggactatggactaaaatttatcaaggtctaaacatgtatgagagcatctgaagaacaag 270  Q
     ||| || || ||||||| |||||||||| |||||||||||||||||| |||| |||||    
T  7321094 cgaccatagattaaaattcatcaaggtctgaacatgtatgagagcatcagaagcacaag 7321152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 113 - 276
Target Start/End: Original strand, 18527743 - 18527906
Alignment:
Q  113 tgttggaacaaaattggatttatacaatgcctctgatgctttcatgataacaaagtattgaagaacaattagatatgctagtatatgtttaagtttgtag 212  Q
    |||||||||||||||| |||| |||||| ||||| | | ||| || |||||||  |||| ||||||||||||||||||||  |||||||||||| || ||    
T  18527743 tgttggaacaaaattgcatttgtacaatacctctaaagttttgattataacaagatattaaagaacaattagatatgctaaaatatgtttaagtgtgcag 18527842  T
Q  213 gactatggactaaaatttatcaaggtctaaacatgtatgagagcatctgaagaacaagagaagc 276  Q
    ||  || || |||||||||||||||||| ||||| ||| |||||||| |||| |||||||||||    
T  18527843 gatcatagattaaaatttatcaaggtctgaacatatataagagcatcagaagcacaagagaagc 18527906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 113 - 260
Target Start/End: Complemental strand, 12863882 - 12863735
Alignment:
Q  113 tgttggaacaaaattggatttatacaatgcctctgatgctttcatgataacaaagtattgaagaacaattagatatgctagtatatgtttaagtttgtag 212  Q
    |||||||||||||||| |||| ||||||| | |||| | ||| ||||||||||||||||||| ||||||| |||||| || ||| ||||||||| || ||    
T  12863882 tgttggaacaaaattgaatttgtacaatgtcactgaagttttgatgataacaaagtattgaacaacaattggatatgttaatatgtgtttaagtgtgcag 12863783  T
Q  213 gactatggactaaaatttatcaaggtctaaacatgtatgagagcatct 260  Q
    ||| ||  | |||||||||| ||||||| ||||| ||| |||||||||    
T  12863782 gaccatatattaaaatttattaaggtctgaacatatataagagcatct 12863735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 156 - 259
Target Start/End: Original strand, 25724323 - 25724426
Alignment:
Q  156 atgataacaaagtattgaagaacaattagatatgctagtatatgtttaagtttgtaggactatggactaaaatttatcaaggtctaaacatgtatgagag 255  Q
    |||||||||||||| |||||||||||| |||||| || |||||||| || | || ||||| ||  | ||||||||| |||||||||||||||||| ||||    
T  25724323 atgataacaaagtactgaagaacaattggatatgataatatatgttcaactgtgcaggaccataaattaaaatttaacaaggtctaaacatgtataagag 25724422  T
Q  256 catc 259  Q
    ||||    
T  25724423 catc 25724426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 116 - 259
Target Start/End: Complemental strand, 28890764 - 28890622
Alignment:
Q  116 tggaacaaaattggatttatacaatgcctctgatgctttcatgataacaaagtattgaagaacaattagatatgctagtatatgtttaagtttgtaggac 215  Q
    ||||||||||||| |||| |||||  ||||| | | ||| |||||||||||||||| ||||| |||| ||||||||| ||||| ||||||| || |||||    
T  28890764 tggaacaaaattg-atttgtacaacccctctaaggttttgatgataacaaagtattaaagaataattggatatgctaatatatatttaagtgtgcaggac 28890666  T
Q  216 tatggactaaaatttatcaaggtctaaacatgtatgagagcatc 259  Q
     || || ||||||| | ||||||||  |||||||| ||||||||    
T  28890665 catagattaaaattcaacaaggtctggacatgtataagagcatc 28890622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 156 - 274
Target Start/End: Original strand, 24276863 - 24276981
Alignment:
Q  156 atgataacaaagtattgaagaacaattagatatgctagtatatgtttaagtttgtaggactatggactaaaatttatcaaggtctaaacatgtatgagag 255  Q
    ||||||||||||||||| ||||||||| |||||| || |||||||| | ||  ||||||| || || |||  |||| |||||||| ||||||||| ||||    
T  24276863 atgataacaaagtattgtagaacaattggatatgttaatatatgttcatgtgcgtaggacaatagattaatttttaacaaggtctgaacatgtataagag 24276962  T
Q  256 catctgaagaacaagagaa 274  Q
    |||| |||| |||||||||    
T  24276963 catcagaagcacaagagaa 24276981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 8 - 103
Target Start/End: Original strand, 15191375 - 15191470
Alignment:
Q  8 ggaatcattgcaacatgcttgtgcatttttggattatgagctctatcgaagaatccattgcactaagcattgtgttccttaaaaatgaaattgatg 103  Q
    |||||| |||||||||||||||||||| |||||||||||  ||| | ||||| || ||||||| ||||||||| |||||  ||||||  |||||||    
T  15191375 ggaatcgttgcaacatgcttgtgcattcttggattatgaattctgttgaagattcaattgcacaaagcattgttttcctggaaaatgccattgatg 15191470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 390 - 464
Target Start/End: Original strand, 28800732 - 28800806
Alignment:
Q  390 actctgagttattcggactctgaggacttagaagccacatcatatttgtcttcttctaaaaagggtcactttcag 464  Q
    ||||| |||||| | | |||||| ||||||||||||||||||| ||||||||||||||| || |||| |||||||    
T  28800732 actctaagttatccaggctctgaagacttagaagccacatcatctttgtcttcttctaagaatggtcgctttcag 28800806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 174 - 275
Target Start/End: Complemental strand, 24122201 - 24122100
Alignment:
Q  174 agaacaattagatatgctagtatatgtttaagtttgtaggactatggactaaaatttatcaaggtctaaacatgtatgagagcatctgaagaacaagaga 273  Q
    |||| |||| ||||||||| ||| |||| |||| || ||||| || || |||||||||||||| | | ||||| |||||||| |||||||| ||||||||    
T  24122201 agaataattggatatgctaatatgtgttcaagtgtgcaggaccatagattaaaatttatcaagttatgaacatatatgagagtatctgaagcacaagaga 24122102  T
Q  274 ag 275  Q
    ||    
T  24122101 ag 24122100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 113 - 274
Target Start/End: Original strand, 23584547 - 23584706
Alignment:
Q  113 tgttggaacaaaattggatttatacaatgcctctgatgctttcatgataacaaagtattgaagaacaattagatatgctagtatatgtttaagtttgtag 212  Q
    ||||||||||||||||| ||| |||||| ||||| | | ||| ||||| | ||| | || ||||||||||  |||||||| |||||||| ||||  | ||    
T  23584547 tgttggaacaaaattgg-tttgtacaattcctctaaggttttgatgat-ataaaatgttaaagaacaattgaatatgctaatatatgttcaagtgcgcag 23584644  T
Q  213 gactatggactaaaatttatcaaggtctaaacatgtatgagagcatctgaagaacaagagaa 274  Q
    ||| || || |||||||||  ||||| | ||||||||| ||||||||  ||| |||||||||    
T  23584645 gaccattgattaaaatttaataaggtttgaacatgtataagagcatcataagcacaagagaa 23584706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 113 - 198
Target Start/End: Original strand, 24502345 - 24502430
Alignment:
Q  113 tgttggaacaaaattggatttatacaatgcctctgatgctttcatgataacaaagtattgaagaacaattagatatgctagtatat 198  Q
    |||||||||||||||  | || |||||| ||||| | | ||| ||||||| |||||||| |||||||||| ||||||||| |||||    
T  24502345 tgttggaacaaaattataattgtacaatacctctaaagttttgatgataataaagtattaaagaacaattggatatgctaatatat 24502430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 156 - 276
Target Start/End: Original strand, 28800450 - 28800568
Alignment:
Q  156 atgataacaaagtattgaagaacaattagatatgctagtatatgtttaagtttgtaggactatggactaaaatttatcaaggtctaaacatgtatgagag 255  Q
    ||||||||||| ||| ||| || | ||| |||||||| ||||| |||||||  ||||||| || || |||||||| ||||| ||| ||||| ||| |||     
T  28800450 atgataacaaactatcgaataaaagttaaatatgctaatatatatttaagt--gtaggaccatagattaaaatttgtcaagttctgaacatatataagat 28800547  T
Q  256 catctgaagaacaagagaagc 276  Q
    ||| ||||| |||||||||||    
T  28800548 catttgaagtacaagagaagc 28800568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 119 - 259
Target Start/End: Original strand, 24308520 - 24308659
Alignment:
Q  119 aacaaaattggatttatacaatgcctctgatgctttcatgataacaaagtattgaagaacaattagatatgctagtatatgtttaagtttgtaggactat 218  Q
    ||||||||||| ||| |||||| ||||| | | ||| |||||||||||||||| || || |||| ||||||  | |||||||| ||||  | ||||| ||    
T  24308520 aacaaaattgg-tttgtacaattcctctaaggttttgatgataacaaagtattaaataaaaattggatatgtgaatatatgttcaagtgcgcaggaccat 24308618  T
Q  219 ggactaaaatttatcaaggtctaaacatgtatgagagcatc 259  Q
      | ||||||||| |||||| | ||||||||| ||||||||    
T  24308619 aaattaaaatttaacaaggtttgaacatgtataagagcatc 24308659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 131 - 206
Target Start/End: Original strand, 6587137 - 6587213
Alignment:
Q  131 tttatacaatgcctctgatgctttcatgataacaaagtattg-aagaacaattagatatgctagtatatgtttaagt 206  Q
    |||||||||||||||||| | ||| || |||||||||| | | |||||||||| |||||| || | |||||||||||    
T  6587137 tttatacaatgcctctgaagttttgattataacaaagtctagaaagaacaattggatatgttaatgtatgtttaagt 6587213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 68; Significance: 4e-30; HSPs: 17)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 113 - 271
Target Start/End: Complemental strand, 15376080 - 15375921
Alignment:
Q  113 tgttggaacaaaattggatttatacaatgcctctgatgctttcatgataacaaagtattgaa-gaacaattagatatgctagtatatgtttaagtttgta 211  Q
    |||||||||||| || ||||| ||||||| |||||| | ||| ||||||| |||||||| || |||||||| ||||| ||||||||||||||||| | ||    
T  15376080 tgttggaacaaagttagatttgtacaatgactctgaagttttgatgataataaagtattaaaagaacaattggatatactagtatatgtttaagtgtata 15375981  T
Q  212 ggactatggactaaaatttatcaaggtctaaacatgtatgagagcatctgaagaacaaga 271  Q
    ||||||| || |||||||||||||||||| ||||| ||| |||| ||| |||| ||||||    
T  15375980 ggactattgattaaaatttatcaaggtctgaacatatataagagtatcagaagcacaaga 15375921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 113 - 276
Target Start/End: Original strand, 16586558 - 16586720
Alignment:
Q  113 tgttggaacaaaattggatttatacaatgcctctgatgctttcatgataacaaagtattgaagaacaattagatatgctagtatatgtttaagtttgtag 212  Q
    |||||||||||||||| ||||||||||| ||||| |   ||| |||||||||||||||| || || ||||  |||||||| |||||||| || |||| ||    
T  16586558 tgttggaacaaaattg-atttatacaattcctctaagattttgatgataacaaagtattaaaaaagaattgaatatgctaatatatgttcaaatttgcag 16586656  T
Q  213 gactatggactaaaatttatcaaggtctaaacatgtatgagagcatctgaagaacaagagaagc 276  Q
    ||| ||  | ||||||||| |||||| | || |||||| |||||||| |||| |||||||||||    
T  16586657 gaccataaattaaaatttaacaaggtttgaaaatgtataagagcatcagaagcacaagagaagc 16586720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 156 - 276
Target Start/End: Complemental strand, 23959804 - 23959684
Alignment:
Q  156 atgataacaaagtattgaagaacaattagatatgctagtatatgtttaagtttgtaggactatggactaaaatttatcaaggtctaaacatgtatgagag 255  Q
    |||||||||||||||| || ||||| | ||||||||| |||||||| |||| || ||||| ||  | ||||||||| |||||| | ||||||||| ||||    
T  23959804 atgataacaaagtattaaataacaacttgatatgctaatatatgttcaagtgtggaggaccatatattaaaatttaacaaggtatgaacatgtataagag 23959705  T
Q  256 catctgaagaacaagagaagc 276  Q
    | ||||||| || ||||||||    
T  23959704 cgtctgaagcactagagaagc 23959684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 113 - 276
Target Start/End: Complemental strand, 22269158 - 22268996
Alignment:
Q  113 tgttggaacaaaattggatttatacaatgcctctgatgctttcatgataacaaagtattgaagaacaattagatatgctagtatatgtttaagtttgtag 212  Q
    ||||||||||||||| ||||| ||||||  || |||   ||| |||||||||||||| ||||||| || | ||||||||| ||||| |||||  | | ||    
T  22269158 tgttggaacaaaattagatttgtacaatatctttgaaattttgatgataacaaagtaatgaagaaaaaatggatatgctaatatatatttaaaat-gcag 22269060  T
Q  213 gactatggactaaaatttatcaaggtctaaacatgtatgagagcatctgaagaacaagagaagc 276  Q
    ||| || || |||||||||||||||||| || || ||| |||||||| |||| | |||||||||    
T  22269059 gaccatagattaaaatttatcaaggtctgaaaatatattagagcatcagaagtataagagaagc 22268996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 185 - 258
Target Start/End: Original strand, 17569250 - 17569323
Alignment:
Q  185 atatgctagtatatgtttaagtttgtaggactatggactaaaatttatcaaggtctaaacatgtatgagagcat 258  Q
    |||||||| ||||||||||||| |||| ||| || || |||||||||||||||||| ||||| ||| |||||||    
T  17569250 atatgctaatatatgtttaagtgtgtatgaccatagattaaaatttatcaaggtctgaacatatataagagcat 17569323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 113 - 206
Target Start/End: Complemental strand, 18848833 - 18848741
Alignment:
Q  113 tgttggaacaaaattggatttatacaatgcctctgatgctttcatgataacaaagtattgaagaacaattagatatgctagtatatgtttaagt 206  Q
    ||||||||||||||||| ||| ||||||  ||||   | ||| ||||||||||||||||||||||||||| |||||| || |||||||| ||||    
T  18848833 tgttggaacaaaattgg-tttgtacaatttctctagagtttttatgataacaaagtattgaagaacaattggatatgataatatatgttcaagt 18848741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 113 - 206
Target Start/End: Complemental strand, 29410148 - 29410056
Alignment:
Q  113 tgttggaacaaaattggatttatacaatgcctctgatgctttcatgataacaaagtattgaagaacaattagatatgctagtatatgtttaagt 206  Q
    |||||||||| |||||| ||| |||||| |||||||   ||| |||||| ||||||||||||||||||||| |||||||| ||| |||| ||||    
T  29410148 tgttggaacataattgg-tttgtacaattcctctgaaattttgatgatagcaaagtattgaagaacaattaaatatgctaatatttgttaaagt 29410056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 113 - 198
Target Start/End: Complemental strand, 42256674 - 42256589
Alignment:
Q  113 tgttggaacaaaattggatttatacaatgcctctgatgctttcatgataacaaagtattgaagaacaattagatatgctagtatat 198  Q
    |||||||||||||||| |||| |||| | ||| | | | ||| |||||||||||||||| |||||||||| ||||||||| |||||    
T  42256674 tgttggaacaaaattgaatttgtacagtacctataaagttttgatgataacaaagtattaaagaacaattggatatgctaatatat 42256589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 115 - 250
Target Start/End: Original strand, 35665775 - 35665910
Alignment:
Q  115 ttggaacaaaattggatttatacaatgcctctgatgctttcatgataacaaagtattgaagaacaattagatatgctagtatatgtttaagtttgtagga 214  Q
    ||||| ||||||||| ||| |||||| ||| ||| | ||| |||||||| || |||| || |||||||  ||||| || ||||||||||||| || | ||    
T  35665775 ttggaccaaaattggttttgtacaattcctttgaagttttgatgataacgaaatattaaaaaacaattgaatatgttaatatatgtttaagtatgcacga 35665874  T
Q  215 ctatggactaaaatttatcaaggtctaaacatgtat 250  Q
      || || ||||||||  ||||||||||||||||||    
T  35665875 tcatagattaaaatttgacaaggtctaaacatgtat 35665910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 112 - 182
Target Start/End: Original strand, 26654307 - 26654376
Alignment:
Q  112 gtgttggaacaaaattggatttatacaatgcctctgatgctttcatgataacaaagtattgaagaacaatt 182  Q
    |||||||||||| | ||| || ||||||| ||||||| | ||| |||||||||||||||||||||||||||    
T  26654307 gtgttggaacaagagtgg-ttcatacaattcctctgaggttttgatgataacaaagtattgaagaacaatt 26654376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 113 - 188
Target Start/End: Original strand, 21547870 - 21547944
Alignment:
Q  113 tgttggaacaaaattggatttatacaatgcctctgatgctttcatgataacaaagtattgaagaacaattagatat 188  Q
    ||||||||||||| ||| ||| |||||| ||||| | | ||| |||||| |||||||||||||||||||| |||||    
T  21547870 tgttggaacaaaagtgg-tttgtacaattcctctaaggttttgatgataccaaagtattgaagaacaattggatat 21547944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 135 - 206
Target Start/End: Original strand, 22311203 - 22311274
Alignment:
Q  135 tacaatgcctctgatgctttcatgataacaaagtattgaagaacaattagatatgctagtatatgtttaagt 206  Q
    |||||| ||||| | | ||| ||||||||||||||||||||||||||| ||||| ||| ||| |||| ||||    
T  22311203 tacaattcctctaaggttttgatgataacaaagtattgaagaacaattggatatactaatatttgttcaagt 22311274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 159 - 206
Target Start/End: Original strand, 25916223 - 25916270
Alignment:
Q  159 ataacaaagtattgaagaacaattagatatgctagtatatgtttaagt 206  Q
    |||||||||||||||||||||||| ||||| ||| ||| |||||||||    
T  25916223 ataacaaagtattgaagaacaattggatatactaatatttgtttaagt 25916270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 113 - 206
Target Start/End: Complemental strand, 18038810 - 18038716
Alignment:
Q  113 tgttggaacaaaattggatttatacaatgcctctgatgctttcatgataacaaagtatt-gaagaacaattagatatgctagtatatgtttaagt 206  Q
    ||||| |||||||| || ||| |||||||||||| | | ||| |||||||||| |||||  |||||||||| ||||||||| | |||||| ||||    
T  18038810 tgttgaaacaaaataggttttgtacaatgcctcttaggttttaatgataacaaggtattaaaagaacaattggatatgctaatgtatgttcaagt 18038716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 156 - 204
Target Start/End: Complemental strand, 13074165 - 13074117
Alignment:
Q  156 atgataacaaagtattgaagaacaattagatatgctagtatatgtttaa 204  Q
    |||||||||||||||| || |||||||  |||||||| |||||||||||    
T  13074165 atgataacaaagtattaaaaaacaattgaatatgctaatatatgtttaa 13074117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 113 - 177
Target Start/End: Original strand, 17568416 - 17568480
Alignment:
Q  113 tgttggaacaaaattggatttatacaatgcctctgatgctttcatgataacaaagtattgaagaa 177  Q
    ||||| |||||||||| |||| || ||||||||| | | ||| || |||||||||||||||||||    
T  17568416 tgttgaaacaaaattgaatttgtataatgcctctaaagttttgataataacaaagtattgaagaa 17568480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 156 - 275
Target Start/End: Original strand, 19877736 - 19877856
Alignment:
Q  156 atgataacaaagtattgaagaacaattagatatgctagtatatgtttaagtttgtaggactatggactaaaatttatcaaggtctaaacatgtatgagag 255  Q
    |||||||||||||||| |||||||| | ||||  ||| |||| ||| || | |  ||||| || || ||||||||| |||||| | ||||||||| || |    
T  19877736 atgataacaaagtattaaagaacaacttgataaactaatatacgttaaattattcaggaccatcgaataaaatttaacaaggtatgaacatgtataagtg 19877835  T
Q  256 c-atctgaagaacaagagaag 275  Q
    | |||||||| ||||||||||    
T  19877836 caatctgaagcacaagagaag 19877856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 60; Significance: 2e-25; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 113 - 276
Target Start/End: Complemental strand, 26239089 - 26238926
Alignment:
Q  113 tgttggaacaaaattggatttatacaatgcctctgatgctttcatgataacaaagtattgaagaacaattagatatgctagtatatgtttaagtttgtag 212  Q
    |||||||||||||||| ||||  |||||||| |||  | ||| ||||||||||||||||||||||||||| ||||||||| ||||| ||||||  || |     
T  26239089 tgttggaacaaaattgaatttgcacaatgccactgcagttttgatgataacaaagtattgaagaacaattggatatgctaatatatttttaagcatgcat 26238990  T
Q  213 gactatggactaaaatttatcaaggtctaaacatgtatgagagcatctgaagaacaagagaagc 276  Q
    ||| ||  | |||||||||| ||||||||||||| ||| | |||||| |||| |||| ||||||    
T  26238989 gaccataaattaaaatttattaaggtctaaacatatataaaagcatcagaagcacaaaagaagc 26238926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 113 - 276
Target Start/End: Original strand, 10814379 - 10814543
Alignment:
Q  113 tgttggaacaaaattggatttatacaatgcctctgatgctttcatgataacaaagtattgaagaacaattagatatgctagtatatgtttaagtttgtag 212  Q
    ||||||||||||||||| ||| |||||| ||||| | | ||| ||| |||||||| ||| |||||||||| ||||||||| |||| |||||||| |||||    
T  10814379 tgttggaacaaaattgg-tttgtacaattcctctaaggttttgatggtaacaaagaattaaagaacaattggatatgctaatatacgtttaagtgtgtag 10814477  T
Q  213 gac--tatggactaaaatttatcaaggtctaaacatgtatgagagcatctgaagaacaagagaagc 276  Q
    |||  ||| || ||||||||| |||||||| ||||||||| ||||||||  ||| | |||||||||    
T  10814478 gaccatatagattaaaatttaacaaggtctgaacatgtataagagcatcaaaagtaaaagagaagc 10814543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 122 - 275
Target Start/End: Original strand, 6560493 - 6560646
Alignment:
Q  122 aaaattggatttatacaatgcctctgatgctttcatgataacaaagtattgaagaacaattagatatgctagtatatgtttaagtttgtaggactatgga 221  Q
    ||||||||| |||||||||| |||| | | ||| |||||||||||||  ||||||| |||   ||||| || |||||||||||||||| || || ||  |    
T  6560493 aaaattggaattatacaatgtctctaaagttttgatgataacaaagtgatgaagaaaaatcgaatatggtaatatatgtttaagtttgcagaaccataaa 6560592  T
Q  222 ctaaaatttatcaaggtctaaacatgtatgagagcatctgaagaacaagagaag 275  Q
     || ||||||||||||||| ||||| ||| ||||||||  ||| ||||||||||    
T  6560593 ttacaatttatcaaggtctgaacatatataagagcatcaaaagcacaagagaag 6560646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 159 - 250
Target Start/End: Original strand, 22562392 - 22562483
Alignment:
Q  159 ataacaaagtattgaagaacaattagatatgctagtatatgtttaagtttgtaggactatggactaaaatttatcaaggtctaaacatgtat 250  Q
    ||||||||||||| ||||| |||| ||||||| | |||||||| |||| || |||||||| || |||||||||  ||||||| |||||||||    
T  22562392 ataacaaagtattaaagaaaaattggatatgcgaatatatgttcaagtgtgcaggactatagattaaaatttaaaaaggtctgaacatgtat 22562483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 123 - 276
Target Start/End: Original strand, 17146173 - 17146326
Alignment:
Q  123 aaattggatttatacaatgcctctgatgctttcatgataacaaagtattgaagaacaattagatatgctagtatatgtttaagtttgtaggactatggac 222  Q
    |||||||||||  | ||||||| ||||  ||| |||||||||||||| | ||||||||||  |||||||| ||||| ||||||| || ||||  ||  |     
T  17146173 aaattggatttggataatgcctatgatttttttatgataacaaagtactaaagaacaattgtatatgctaatatatatttaagtgtgcaggatcatatat 17146272  T
Q  223 taaaatttatcaaggtctaaacatgtatgagagcatctgaagaacaagagaagc 276  Q
    ||||||||| |||||| | |||||  || |||| ||| |||| |||||||||||    
T  17146273 taaaatttaacaaggtttgaacatagataagagtatcagaagcacaagagaagc 17146326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 113 - 198
Target Start/End: Complemental strand, 24576251 - 24576166
Alignment:
Q  113 tgttggaacaaaattggatttatacaatgcctctgatgctttcatgataacaaagtattgaagaacaattagatatgctagtatat 198  Q
    |||||||||||||||  |||  |||||| |||||   | ||| |||||||||||||||| |||||||||| |||||||||||||||    
T  24576251 tgttggaacaaaatttaattcgtacaatacctctagagttttgatgataacaaagtattcaagaacaattggatatgctagtatat 24576166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 116 - 264
Target Start/End: Complemental strand, 21747524 - 21747376
Alignment:
Q  116 tggaacaaaattggatttatacaatgcctctgatgctttcatgataacaaagtattgaagaacaattagatatgctagtatatgtttaagtttgtaggac 215  Q
    ||||| |||||||||||   ||||||||||| | |  || || ||||||||||||| ||||| |||| ||||||||| |||||| | |||  || |||||    
T  21747524 tggaataaaattggattggcacaatgcctctaaagtgttgataataacaaagtattaaagaaaaattggatatgctaatatatgatcaaggatgcaggac 21747425  T
Q  216 tatggactaaaatttatcaaggtctaaacatgtatgagagcatctgaag 264  Q
     ||  ||||||||||| |||||||| || |||||  |||||||| ||||    
T  21747424 catatactaaaatttaacaaggtctgaaaatgtaaaagagcatcagaag 21747376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 112 - 257
Target Start/End: Complemental strand, 17291998 - 17291853
Alignment:
Q  112 gtgttggaacaaaattggatttatacaatgcctctgatgctttcatgataacaaagtattgaagaacaattagatatgctagtatatgtttaagtttgta 211  Q
    ||||||||||||||||| ||||| |||||  || | |   ||| ||||||||||| | || ||||| ||||  |||||||| ||||||||||||| ||||    
T  17291998 gtgttggaacaaaattgaatttagacaatatctttaaaattttgatgataacaaaatcttaaagaataattgaatatgctaatatatgtttaagtgtgta 17291899  T
Q  212 ggactatggactaaaatttatcaaggtctaaacatgtatgagagca 257  Q
     ||  || || ||||||||| ||| |||| ||||| ||||| ||||    
T  17291898 agatcatagattaaaatttaacaaagtctgaacatatatgatagca 17291853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 156 - 188
Target Start/End: Complemental strand, 10821532 - 10821500
Alignment:
Q  156 atgataacaaagtattgaagaacaattagatat 188  Q
    |||||||||||||||||||||||||||||||||    
T  10821532 atgataacaaagtattgaagaacaattagatat 10821500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 116 - 276
Target Start/End: Complemental strand, 29032475 - 29032315
Alignment:
Q  116 tggaacaaaattggatttatacaatgcctctgatgctttcatgataacaaagtattgaagaacaattagatatgctagtatatgtttaagtttgtaggac 215  Q
    |||||||||||||||||| || ||  |||||   | ||| |||||||||||||||| ||||||||||  |||||||| ||||| ||  ||  || ||||     
T  29032475 tggaacaaaattggatttgtataacacctctagagttttgatgataacaaagtattaaagaacaattgaatatgctaatatatattctagagtgcaggat 29032376  T
Q  216 tatggactaaaatttatcaaggtctaaacatgtatgagagcatctgaagaacaagagaagc 276  Q
      | || ||||||| | ||||| || ||||||||| |||||||| |||| ||||| |||||    
T  29032375 cttagattaaaattgaacaaggcctgaacatgtataagagcatcagaagcacaagtgaagc 29032315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 131 - 232
Target Start/End: Complemental strand, 12394928 - 12394826
Alignment:
Q  131 tttatacaatgcctctgatgctttcatgataacaaagtattgaa-gaacaattagatatgctagtatatgtttaagtttgtaggactatggactaaaatt 229  Q
    |||| |||||||||||   | ||| |||||||||||||||| || || |||||||||||| || ||| |||| |||| || ||||| || ||||||||||    
T  12394928 tttaaacaatgcctcttcagttttgatgataacaaagtattaaatgatcaattagatatgttaatatttgttcaagtgtgcaggaccatagactaaaatt 12394829  T
Q  230 tat 232  Q
    |||    
T  12394828 tat 12394826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 135 - 192
Target Start/End: Original strand, 30701105 - 30701162
Alignment:
Q  135 tacaatgcctctgatgctttcatgataacaaagtattgaagaacaattagatatgcta 192  Q
    ||||||| |||||| | ||| |||||||||||||||  |||||||||| |||||||||    
T  30701105 tacaatgtctctgaagttttgatgataacaaagtataaaagaacaattggatatgcta 30701162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 277 - 356
Target Start/End: Complemental strand, 26238899 - 26238819
Alignment:
Q  277 aaggtcaatcagaagtcaac-atgtgattaaatgtgaagaatccatccagaagctactaaaggccatactttgaatcatca 356  Q
    ||||||||| |||||||||| ||||||| | | ||||||||| |||||| |||||| | ||| ||||||| || |||||||    
T  26238899 aaggtcaattagaagtcaacaatgtgatcataagtgaagaattcatccataagctattgaagaccatactctggatcatca 26238819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 60; Significance: 2e-25; HSPs: 18)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 113 - 276
Target Start/End: Complemental strand, 9796646 - 9796483
Alignment:
Q  113 tgttggaacaaaattggatttatacaatgcctctgatgctttcatgataacaaagtattgaagaacaattagatatgctagtatatgtttaagtttgtag 212  Q
    ||||||||||||||||  ||| ||||||  |||||| | ||| ||||||| |||||||| |||||||||| |||||| || |||||||| |||| || ||    
T  9796646 tgttggaacaaaattgattttgtacaatttctctgaagttttgatgataataaagtattaaagaacaattggatatgttaatatatgttcaagtgtgcag 9796547  T
Q  213 gactatggactaaaatttatcaaggtctaaacatgtatgagagcatctgaagaacaagagaagc 276  Q
    ||  || || ||||||||| |||||||| ||||||||| |||||||| |||| |||| ||||||    
T  9796546 gatcatagattaaaatttaacaaggtctgaacatgtataagagcatcagaagcacaaaagaagc 9796483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 113 - 276
Target Start/End: Original strand, 14426868 - 14427030
Alignment:
Q  113 tgttggaacaaaattggatttatacaatgcctctgatgctttcatgataacaaagtattgaagaacaattagatatgctagtatatgtttaagtttgtag 212  Q
    ||||||||||||||||| ||| |||||| ||||| |   ||| |||||||||||||||| |||||||||| ||||||||| |||||||| |||| || ||    
T  14426868 tgttggaacaaaattgg-tttgtacaattcctctaagattttgatgataacaaagtattaaagaacaattggatatgctaatatatgttcaagtgtgcag 14426966  T
Q  213 gactatggactaaaatttatcaaggtctaaacatgtatgagagcatctgaagaacaagagaagc 276  Q
    ||| |  || ||||||||| ||| |||| || |||||| |||||||| |||| ||| |||||||    
T  14426967 gaccaaagattaaaatttaacaaagtctgaaaatgtataagagcatcagaagcacaggagaagc 14427030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 113 - 250
Target Start/End: Original strand, 4767319 - 4767455
Alignment:
Q  113 tgttggaacaaaattggatttatacaatgcctctgatgctttcatgataacaaagtattgaagaacaattagatatgctagtatatgtttaagtttgtag 212  Q
    ||||| ||||||||||| ||| |||||| ||||| | | ||| |||||||||||||||| ||||| |||||||||||||| |||||||| |||| || ||    
T  4767319 tgttgaaacaaaattgg-tttgtacaattcctctaaggttttgatgataacaaagtattaaagaataattagatatgctaatatatgttcaagtgtgcag 4767417  T
Q  213 gactatggactaaaatttatcaaggtctaaacatgtat 250  Q
    ||| || || | ||||||| |||||||| |||||||||    
T  4767418 gacgatagatttaaatttaacaaggtctgaacatgtat 4767455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 113 - 276
Target Start/End: Original strand, 38075987 - 38076150
Alignment:
Q  113 tgttggaacaaaattggatttatacaatgcctctgatgctttcatgataacaaagtattgaagaacaattagatatgctagtatatgtttaagtttgtag 212  Q
    ||||||||||||||||  ||| |||||| ||||| |   ||| |||| |||||||||||||||||||||||||||| ||| |||||| | |||| || |     
T  38075987 tgttggaacaaaattgattttgtacaattcctctaagattttgatgacaacaaagtattgaagaacaattagatatactaatatatgctcaagtgtgcat 38076086  T
Q  213 gactatggactaaaatttatcaaggtctaaacatgtatgagagcatctgaagaacaagagaagc 276  Q
     || ||  | ||||||||| |||||||| ||||||||| |||||||| |||| |||| ||||||    
T  38076087 aaccatatattaaaatttaacaaggtctgaacatgtataagagcatcagaagcacaatagaagc 38076150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 114 - 259
Target Start/End: Original strand, 17034102 - 17034248
Alignment:
Q  114 gttggaacaaaattggattta-tacaatgcctctgatgctttcatgataacaaagtattgaagaacaattagatatgctagtatatgtttaagtttgtag 212  Q
    |||||||||||||||| |||  |||||||||||||| | ||| |||||||||| |||||||||||||||| |||||| || || ||||| |||| || |     
T  17034102 gttggaacaaaattggtttttgtacaatgcctctgaagttttgatgataacaatgtattgaagaacaattggatatgttaatacatgttcaagtgtgcac 17034201  T
Q  213 gactatggactaaaatttatcaaggtctaaacatgtatgagagcatc 259  Q
    ||  || || ||| ||||| |||||| | ||||||||| ||||||||    
T  17034202 gatcatagattaatatttaacaaggtttgaacatgtataagagcatc 17034248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 156 - 269
Target Start/End: Complemental strand, 4515108 - 4514995
Alignment:
Q  156 atgataacaaagtattgaagaacaattagatatgctagtatatgtttaagtttgtaggactatggactaaaatttatcaaggtctaaacatgtatgagag 255  Q
    ||||||||||||||||||| ||||| | |||||| || |||||||| |||| || ||||| ||  | ||||||||| |||||||| ||||||||| ||||    
T  4515108 atgataacaaagtattgaaaaacaactggatatgttaatatatgttcaagtgtgcaggaccatatattaaaatttaacaaggtctgaacatgtataagag 4515009  T
Q  256 catctgaagaacaa 269  Q
    |||| |||| ||||    
T  4515008 catcagaagcacaa 4514995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 113 - 278
Target Start/End: Original strand, 17637130 - 17637295
Alignment:
Q  113 tgttggaacaaaattggatttatacaatgcctctgatgctttcatgataacaaagtattgaagaacaattagatatgctagtatatgtttaagtttgtag 212  Q
    ||||||||||||||||| ||| |||||| |||||  || ||| ||||||||||| || | |||||||||| ||||||||  |||||||| |||| || ||    
T  17637130 tgttggaacaaaattggttttgtacaattcctctagtgttttgatgataacaaattagtaaagaacaattggatatgctgatatatgttcaagtatggag 17637229  T
Q  213 gactatggactaaaatttatcaaggtctaaacatgtatgagagcatctgaagaacaagagaagcaa 278  Q
     || ||  | ||||||| | |||||||| ||||||||  | |||||| |||| |||||| ||||||    
T  17637230 aaccatatattaaaattaaacaaggtctgaacatgtacaaaagcatcagaagcacaagataagcaa 17637295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 156 - 274
Target Start/End: Complemental strand, 17119460 - 17119341
Alignment:
Q  156 atgataacaaagtattgaagaacaattagatatgctagtatatgtttaagtttgtaggactatggactaaaatttatcaaggtctaaacatgtat-gaga 254  Q
    |||||||||||||||| |||||| ||| | |||| || ||||||||||||| || ||||| || || ||||||||| ||| |||| |||||||||  |||    
T  17119460 atgataacaaagtattaaagaactatttggtatgttaatatatgtttaagtgtgcaggaccatagattaaaatttaacaaagtctgaacatgtataaaga 17119361  T
Q  255 gcatctgaagaacaagagaa 274  Q
    ||||| |||| |||||||||    
T  17119360 gcatcagaagcacaagagaa 17119341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 156 - 274
Target Start/End: Complemental strand, 4244434 - 4244316
Alignment:
Q  156 atgataacaaagtattgaagaacaattagatatgctagtatatgtttaagtttgtaggactatggactaaaatttatcaaggtctaaacatgtatgagag 255  Q
    |||||||||||  |||||||||||||| |||| | || ||| |||| |||| || | ||  || || |||||||||||||| ||| ||||| ||||||||    
T  4244434 atgataacaaaacattgaagaacaattggataagttaatatgtgttcaagtgtgcaagatcatagattaaaatttatcaagttctgaacatatatgagag 4244335  T
Q  256 catctgaagaacaagagaa 274  Q
    ||||||||| |||||||||    
T  4244334 catctgaagcacaagagaa 4244316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 156 - 206
Target Start/End: Complemental strand, 11045056 - 11045006
Alignment:
Q  156 atgataacaaagtattgaagaacaattagatatgctagtatatgtttaagt 206  Q
    |||||||||||||||||||||||||| |||||||||| |||||||||||||    
T  11045056 atgataacaaagtattgaagaacaatgagatatgctaatatatgtttaagt 11045006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 113 - 215
Target Start/End: Original strand, 13291322 - 13291423
Alignment:
Q  113 tgttggaacaaaattggatttatacaatgcctctgatgctttcatgataacaaagtattgaagaacaattagatatgctagtatatgtttaagtttgtag 212  Q
    ||||||||||||||||| ||| |||||| |||||   | ||| || ||||||||||||||||||||||||||||||| || |||||||| |||| || ||    
T  13291322 tgttggaacaaaattgg-tttgtacaattcctctagagatttgataataacaaagtattgaagaacaattagatatgttaatatatgttcaagtgtgcag 13291420  T
Q  213 gac 215  Q
    |||    
T  13291421 gac 13291423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 112 - 201
Target Start/End: Original strand, 5638289 - 5638378
Alignment:
Q  112 gtgttggaacaaaattggatttatacaatgcctctgatgctttcatgataacaaagtattgaagaacaattagatatgctagtatatgtt 201  Q
    ||||| ||||||||| | |||| |||||||||| | | | ||| || ||||||||||||||||||||||||||||||| || ||||||||    
T  5638289 gtgttcgaacaaaatggaatttgtacaatgcctttaaagttttgataataacaaagtattgaagaacaattagatatgttaatatatgtt 5638378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 8 - 103
Target Start/End: Original strand, 53976393 - 53976488
Alignment:
Q  8 ggaatcattgcaacatgcttgtgcatttttggattatgagctctatcgaagaatccattgcactaagcattgtgttccttaaaaatgaaattgatg 103  Q
    |||||| |||||||||||||||||||| |||||||||||  ||| | ||||| || ||||||| ||||||||| |||||  ||||||  |||||||    
T  53976393 ggaatcgttgcaacatgcttgtgcattcttggattatgaattctgttgaagattcaattgcacaaagcattgttttcctggaaaatgccattgatg 53976488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 156 - 206
Target Start/End: Original strand, 20311367 - 20311417
Alignment:
Q  156 atgataacaaagtattgaagaacaattagatatgctagtatatgtttaagt 206  Q
    |||||||||||||||| |||||||||| ||||||||| |||||||| ||||    
T  20311367 atgataacaaagtatttaagaacaattggatatgctaatatatgttcaagt 20311417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 156 - 201
Target Start/End: Complemental strand, 14328738 - 14328693
Alignment:
Q  156 atgataacaaagtattgaagaacaattagatatgctagtatatgtt 201  Q
    |||||||||||||||||||||||| || ||||||||| ||||||||    
T  14328738 atgataacaaagtattgaagaacagttggatatgctaatatatgtt 14328693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 277 - 400
Target Start/End: Original strand, 5638492 - 5638616
Alignment:
Q  277 aaggtcaatcagaagtcaaca-tgtgattaaatgtgaagaatccatccagaagctactaaaggccatactttgaatcatcaaactctgcgtcacccaaac 375  Q
    |||||||| |||| |||| || |||||| | | ||||||||||||| ||||| |||||||||  || ||| || |||||||||||||| ||||||   ||    
T  5638492 aaggtcaaccagaggtcatcaatgtgatcagaagtgaagaatccatacagaatctactaaagatcagactctggatcatcaaactctgagtcaccttgac 5638591  T
Q  376 tctaagtcacccagactctgagtta 400  Q
    | ||||||| ||||| |||| ||||    
T  5638592 tgtaagtcatccagattctgtgtta 5638616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 159 - 202
Target Start/End: Complemental strand, 14332713 - 14332670
Alignment:
Q  159 ataacaaagtattgaagaacaattagatatgctagtatatgttt 202  Q
    ||||||||||||||||||||| || ||||||||| |||||||||    
T  14332713 ataacaaagtattgaagaacagttggatatgctaatatatgttt 14332670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 113 - 192
Target Start/End: Complemental strand, 24113074 - 24112995
Alignment:
Q  113 tgttggaacaaaattggatttatacaatgcctctgatgctttcatgataacaaagtattgaagaacaattagatatgcta 192  Q
    ||||| |||||||| | ||||| ||||||||||| | | ||| |||||| ||||||||||||||||| |  |||||||||    
T  24113074 tgttgaaacaaaatggaatttagacaatgcctctaaagtttttatgatagcaaagtattgaagaacagtgggatatgcta 24112995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 57; Significance: 1e-23; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 108 - 276
Target Start/End: Original strand, 26335188 - 26335356
Alignment:
Q  108 taatgtgttggaacaaaattggatttatacaatgcctctgatgctttcatgataacaaagtattgaagaacaattagatatgctagtatatgtttaagtt 207  Q
    |||| |||||||||||||||||||||||||||||||| | | | ||| ||||||||||| |||| |||||||||| ||||| ||| |||||||| || |     
T  26335188 taatatgttggaacaaaattggatttatacaatgcctataaagttttgatgataacaaattattaaagaacaattggatatactaatatatgttcaaata 26335287  T
Q  208 tgtaggactatggactaaaatttatcaaggtctaaacatgtatgagagcatctgaagaacaagagaagc 276  Q
    || ||||| || || | ||||| | |||| ||| |||||||||  ||||||| |||| | |||||||||    
T  26335288 tgaaggaccatagattgaaattcaacaagatcttaacatgtatatgagcatcagaagcataagagaagc 26335356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 272 - 426
Target Start/End: Original strand, 17337866 - 17338020
Alignment:
Q  272 gaagcaaggtcaatcagaagtcaacatgtgattaaatgtgaagaatccatccagaagctactaaaggccatactttgaatcatcaaactctgcgtcaccc 371  Q
    |||| ||||||||| | ||||||||| ||||| | | ||||||||  || ||| |||||| | ||   || |||||||||||||| |||||| ||||| |    
T  17337866 gaagaaaggtcaataaaaagtcaacaagtgatcagaagtgaagaagtcacccaaaagctattgaaaatcagactttgaatcatcagactctgagtcactc 17337965  T
Q  372 aaactctaagtcacccagactctgagttattcggactctgaggacttagaagcca 426  Q
    | || |||||||| |||||||||  | ||| | |||||||||||| |||||||||    
T  17337966 agaccctaagtcatccagactctatggtatccagactctgaggacctagaagcca 17338020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 113 - 206
Target Start/End: Original strand, 24492050 - 24492142
Alignment:
Q  113 tgttggaacaaaattggatttatacaatgcctctgatgctttcatgataacaaagtattgaagaacaattagatatgctagtatatgtttaagt 206  Q
    ||||||||||||| ||| ||| |||||| ||||| | | ||| ||||||||||||||||||||||||||| ||||| ||| ||| |||| ||||    
T  24492050 tgttggaacaaaagtgg-tttgtacaattcctctaaggttttgatgataacaaagtattgaagaacaattggatatactaatatttgttcaagt 24492142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 113 - 188
Target Start/End: Original strand, 25935899 - 25935974
Alignment:
Q  113 tgttggaacaaaattggatttatacaatgcctctgatgctttcatgataacaaagtattgaagaacaattagatat 188  Q
    ||||||||||||||||||||| |||| | ||||| | | ||| |||||| |||| |||| ||||||||| ||||||    
T  25935899 tgttggaacaaaattggatttgtacagtacctctaaggttttgatgatagcaaactattaaagaacaatcagatat 25935974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 56; Significance: 5e-23; HSPs: 14)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 113 - 276
Target Start/End: Complemental strand, 957040 - 956877
Alignment:
Q  113 tgttggaacaaaattggatttatacaatgcctctgatgctttcatgataacaaagtattgaagaacaattagatatgctagtatatgtttaagtttgtag 212  Q
    ||||| |||||||||| |||| |||||||||||||| | ||| |||||||||||||| |||||||| |||  ||||| |||||||||||||||| || ||    
T  957040 tgttgaaacaaaattgaatttgtacaatgcctctgaagttttgatgataacaaagtaatgaagaacgattgaatatgttagtatatgtttaagtgtgcag 956941  T
Q  213 gactatggactaaaatttatcaaggtctaaacatgtatgagagcatctgaagaacaagagaagc 276  Q
    ||  ||  | |||||||||||||||| | ||||| || |||| |||| |||  || ||||||||    
T  956940 gaacataaattaaaatttatcaaggtttgaacatatacgagaacatcagaaacacgagagaagc 956877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 156 - 274
Target Start/End: Complemental strand, 19144003 - 19143885
Alignment:
Q  156 atgataacaaagtattgaagaacaattagatatgctagtatatgtttaagtttgtaggactatggactaaaatttatcaaggtctaaacatgtatgagag 255  Q
    |||||||||||||||| || ||||||| ||||||||| |||||||| || | || ||||| || || ||||||||| |||||||| ||||||||| ||||    
T  19144003 atgataacaaagtattaaataacaattggatatgctaatatatgttcaattgtgaaggaccatagattaaaatttaacaaggtctgaacatgtataagag 19143904  T
Q  256 catctgaagaacaagagaa 274  Q
    |||  |||| |||||||||    
T  19143903 cattagaagcacaagagaa 19143885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 156 - 274
Target Start/End: Complemental strand, 20743402 - 20743284
Alignment:
Q  156 atgataacaaagtattgaagaacaattagatatgctagtatatgtttaagtttgtaggactatggactaaaatttatcaaggtctaaacatgtatgagag 255  Q
    |||||||||||||||| || ||||||| ||||||||| |||||||| || | || ||||| || || ||||||||| |||||||| ||||||||| ||||    
T  20743402 atgataacaaagtattaaataacaattggatatgctaatatatgttcaattgtgaaggaccatagattaaaatttaacaaggtctgaacatgtataagag 20743303  T
Q  256 catctgaagaacaagagaa 274  Q
    |||  |||| |||||||||    
T  20743302 cattagaagcacaagagaa 20743284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 157 - 276
Target Start/End: Original strand, 10646486 - 10646605
Alignment:
Q  157 tgataacaaagtattgaagaacaattagatatgctagtatatgtttaagtttgtaggactatggactaaaatttatcaaggtctaaacatgtatgagagc 256  Q
    |||||||||||||||||| ||||||| |||||| ||  ||||||| |||| || ||||| ||  | ||||||||| |||||||| ||||||||| |||||    
T  10646486 tgataacaaagtattgaataacaattggatatgttaacatatgttcaagtgtgcaggaccatataataaaatttaacaaggtctgaacatgtataagagc 10646585  T
Q  257 atctgaagaacaagagaagc 276  Q
    ||| |||  |||||||||||    
T  10646586 atcagaaacacaagagaagc 10646605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 113 - 206
Target Start/End: Complemental strand, 12341777 - 12341684
Alignment:
Q  113 tgttggaacaaaattggatttatacaatgcctctgatgctttcatgataacaaagtattgaagaacaattagatatgctagtatatgtttaagt 206  Q
    ||||||||||||||||||||| |||||||||||| |   ||| |||||||||||||||| ||||| ||||  ||||| || |||||||||||||    
T  12341777 tgttggaacaaaattggatttgtacaatgcctctaaaattttgatgataacaaagtattaaagaaaaattgaatatgttaatatatgtttaagt 12341684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 113 - 276
Target Start/End: Complemental strand, 8106129 - 8105967
Alignment:
Q  113 tgttggaacaaaattggatttatacaatgcctctgatgctttcatgataacaaagtattgaagaacaattagatatgctagtatatgtttaagtttgtag 212  Q
    ||||||||||||||||| ||| |||||| |||||   | ||| |||||||||||||||| ||||| |||||||||||||| ||||| ||  ||| || ||    
T  8106129 tgttggaacaaaattgg-tttgtacaattcctctagggttttgatgataacaaagtattaaagaataattagatatgctaatatatcttatagtgtgcag 8106031  T
Q  213 gactatggactaaaatttatcaaggtctaaacatgtatgagagcatctgaagaacaagagaagc 276  Q
    ||| ||  | ||| ||||| |||||| | ||||||||| |||| ||  ||||||||||| ||||    
T  8106030 gaccatatattaatatttaacaaggtatgaacatgtataagagaattagaagaacaagaaaagc 8105967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 113 - 258
Target Start/End: Original strand, 11608781 - 11608926
Alignment:
Q  113 tgttggaacaaaattggatttatacaatgcctctgatgctttcatgataacaaagtattgaagaacaattagatatgctagtatatgtttaagtttgtag 212  Q
    ||||| |||||||| || ||| ||| ||| |||||||| ||| |||||||  | ||||| |||||||||||||||||||| | | |||| |||| || ||    
T  11608781 tgttgaaacaaaatgggttttgtacgatgtctctgatgttttgatgataattaggtattaaagaacaattagatatgctaatttgtgttaaagtatgcag 11608880  T
Q  213 gactatggactaaaatttatcaaggtctaaacatgtatgagagcat 258  Q
    ||  || || |||| ||||||||| ||| ||||| ||| |||||||    
T  11608881 gagcatagattaaattttatcaagttctgaacatatataagagcat 11608926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 156 - 276
Target Start/End: Original strand, 17891059 - 17891179
Alignment:
Q  156 atgataacaaagtattgaagaacaattagatatgctagtatatgtttaagtttgtaggactatggactaaaatttatcaaggtctaaacatgtatgagag 255  Q
    ||||||||||| |||| |||||||||||||||||||| |||||| ||| || || ||||| || || ||||||||| |||||| | |||  |||| ||||    
T  17891059 atgataacaaaatattaaagaacaattagatatgctaatatatg-ttaggtgtgcaggaccatagattaaaatttaacaaggtatgaactggtataagag 17891157  T
Q  256 catctgaag-aacaagagaagc 276  Q
    |||| |||| | ||||||||||    
T  17891158 catcagaagcaccaagagaagc 17891179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 113 - 275
Target Start/End: Complemental strand, 24865879 - 24865717
Alignment:
Q  113 tgttggaacaaaattggatttatacaatgcctctgatgctttcatgataacaaagtattgaagaacaattagatatgctagtatatgtttaagtttgtag 212  Q
    |||||||||||| |||  |||||||||||||||| | | ||| |||||||||||||||  || ||||||| |||||| |  |||||| | |||| || ||    
T  24865879 tgttggaacaaatttgactttatacaatgcctctaaagttttgatgataacaaagtatataaaaacaattggatatgttgatatatggtcaagtatgcag 24865780  T
Q  213 gactatggactaaaatttatcaaggtctaaacatgtatgagagcatctgaagaacaagagaag 275  Q
    ||  ||  | ||||||||| |||  ||| ||||| |||  ||||||| |||| ||||||||||    
T  24865779 gatcataaattaaaatttaacaaaatctgaacatatatatgagcatcagaagcacaagagaag 24865717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 113 - 229
Target Start/End: Complemental strand, 26822770 - 26822654
Alignment:
Q  113 tgttggaacaaaattggatttatacaatgcctctgatgctttcatgataacaaagtattgaa-gaacaattagatatgctagtatatgtttaagtttgta 211  Q
    |||| |||||||||||| ||| |||||| | ||| | | ||| || ||||||||||||| || |||||||| ||||||||| ||||||||||||| ||||    
T  26822770 tgttcgaacaaaattgg-tttgtacaattcatctaaggttttgataataacaaagtattaaaagaacaattggatatgctaatatatgtttaagtgtgta 26822672  T
Q  212 ggactatggactaaaatt 229  Q
    | || || || |||||||    
T  26822671 gtaccatagattaaaatt 26822654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 156 - 206
Target Start/End: Original strand, 7185284 - 7185334
Alignment:
Q  156 atgataacaaagtattgaagaacaattagatatgctagtatatgtttaagt 206  Q
    |||||||||||||||||||| |||||| ||||||||| ||| |||| ||||    
T  7185284 atgataacaaagtattgaaggacaattggatatgctaatatttgttcaagt 7185334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 223 - 259
Target Start/End: Complemental strand, 5265631 - 5265595
Alignment:
Q  223 taaaatttatcaaggtctaaacatgtatgagagcatc 259  Q
    ||||||||| |||||||||||||||||| ||||||||    
T  5265631 taaaatttaacaaggtctaaacatgtataagagcatc 5265595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 113 - 232
Target Start/End: Complemental strand, 9803636 - 9803517
Alignment:
Q  113 tgttggaacaaaattggatttatacaatgcctctgatgctttcatgataacaaagtattgaa-gaacaattagatatgctagtatatgtttaagtttgta 211  Q
    ||||||||||||||   ||||| |||||||||||   | ||| |||||||||| ||||| || |  ||||||||||||||| ||| |||| |||| ||||    
T  9803636 tgttggaacaaaataa-atttaaacaatgcctcttgagttttgatgataacaaggtattaaaagttcaattagatatgctaatatctgttcaagtgtgta 9803538  T
Q  212 ggactatggactaaaatttat 232  Q
    ||||  | |||||||||||||    
T  9803537 ggaccttagactaaaatttat 9803517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 156 - 184
Target Start/End: Original strand, 10983396 - 10983424
Alignment:
Q  156 atgataacaaagtattgaagaacaattag 184  Q
    |||||||||||||||||||||||||||||    
T  10983396 atgataacaaagtattgaagaacaattag 10983424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0804 (Bit Score: 49; Significance: 8e-19; HSPs: 1)
Name: scaffold0804
Description:

Target: scaffold0804; HSP #1
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 115 - 275
Target Start/End: Original strand, 27 - 187
Alignment:
Q  115 ttggaacaaaattggatttatacaatgcctctgatgctttcatgataacaaagtattgaagaacaattagatatgctagtatatgtttaagtttgtagga 214  Q
    ||||||||||||||||||| | |||||||| | |   ||| |||||||||||||||| ||||||||||||||||| || |||||||| |||  || ||||    
T  27 ttggaacaaaattggatttgtccaatgcctttaaaattttgatgataacaaagtattaaagaacaattagatatgttaatatatgttcaagagtgcagga 126  T
Q  215 ctatggactaaaatttatcaaggtctaaacatgtatgagagcatctgaagaacaagagaag 275  Q
       | || ||||||||| ||||||||||| |||||| | |||| | |||| || |||||||    
T  127 tcttagattaaaatttaacaaggtctaaatatgtataaaagcaccagaagcaccagagaag 187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0164 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: scaffold0164
Description:

Target: scaffold0164; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 8 - 103
Target Start/End: Complemental strand, 18599 - 18504
Alignment:
Q  8 ggaatcattgcaacatgcttgtgcatttttggattatgagctctatcgaagaatccattgcactaagcattgtgttccttaaaaatgaaattgatg 103  Q
    |||||| |||||||||||||||||||| |||||||||||  ||| | ||||| || ||||||| ||||||||| |||||  ||||||  |||||||    
T  18599 ggaatcgttgcaacatgcttgtgcattcttggattatgaattctgttgaagattcaattgcacaaagcattgttttcctggaaaatgccattgatg 18504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0164; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 8 - 103
Target Start/End: Complemental strand, 28979 - 28884
Alignment:
Q  8 ggaatcattgcaacatgcttgtgcatttttggattatgagctctatcgaagaatccattgcactaagcattgtgttccttaaaaatgaaattgatg 103  Q
    |||||| |||||||||||||||||||| |||||||||||  ||| | ||||| || ||||||| ||||||||| |||||  ||||||  |||||||    
T  28979 ggaatcgttgcaacatgcttgtgcattcttggattatgaattctgttgaagattcaattgcacaaagcattgttttcctggaaaatgccattgatg 28884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 122 - 264
Target Start/End: Original strand, 319040 - 319182
Alignment:
Q  122 aaaattggatttatacaatgcctctgatgctttcatgataacaaagtattgaagaacaattagatatgctagtatatgtttaagtttgtaggactatgga 221  Q
    ||||| || ||| |||||||||| | | | ||| ||||||||||||||||||| |||||||||||||| || ||| |||| |||| || ||||  ||  |    
T  319040 aaaatgggttttgtacaatgcctttaaagttttgatgataacaaagtattgaaaaacaattagatatgttaatatgtgttcaagtgtgcaggatcataaa 319139  T
Q  222 ctaaaatttatcaaggtctaaacatgtatgagagcatctgaag 264  Q
     ||||||||   ||| ||| | ||| |||||||||||||||||    
T  319140 ttaaaatttgctaagttctgaccatatatgagagcatctgaag 319182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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