View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1732-Insertion-20 (Length: 369)
Name: NF1732-Insertion-20
Description: NF1732
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1732-Insertion-20 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 363; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 363; E-Value: 0
Query Start/End: Original strand, 7 - 369
Target Start/End: Original strand, 55825031 - 55825393
Alignment:
| Q |
7 |
aagatgtactatcaggttgacgacatctccttaattcacgttcaattgccacttttgcagaattttccatctctgcataccacaaagccgtctccattgc |
106 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55825031 |
aagatgtactatcaggttgacgacatctccttaattcacgttcaattgccacttttgcagaattttccatctctgcataccacaaagccgtctccattgc |
55825130 |
T |
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| Q |
107 |
agcctttgtttcctcaacagatttcaggttagcttccacctttatgtctaattcatttttccttgtgtacattccttgcaactcagccatgataactgcc |
206 |
Q |
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| T |
55825131 |
agcctttgtttcctcaacagatttcaggttagcttccacctttatgtctaattcatttttccttgtgtacattccttgcaactcagccatgataactgcc |
55825230 |
T |
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| Q |
207 |
tctttcttttctgccaattcttggtattccttcacttttccattcagtgactcaaactcttcctttgacatcctgatctttccgctgaattttgaaatcg |
306 |
Q |
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| T |
55825231 |
tctttcttttctgccaattcttggtattccttcacttttccattcagtgactcaaactcttcctttgacatcctgatctttccgctgaattttgaaatcg |
55825330 |
T |
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| Q |
307 |
agagtctactttgcacgtcggagataatcttcatctctttaatggctttttgttctgctgctt |
369 |
Q |
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| T |
55825331 |
agagtctactttgcacgtcggagataatcttcatctctttaatggctttttgttctgctgctt |
55825393 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 359; E-Value: 0
Query Start/End: Original strand, 7 - 369
Target Start/End: Complemental strand, 56149950 - 56149588
Alignment:
| Q |
7 |
aagatgtactatcaggttgacgacatctccttaattcacgttcaattgccacttttgcagaattttccatctctgcataccacaaagccgtctccattgc |
106 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
56149950 |
aagatgtactatcaggttgacgacatctccttaattcacgttcaattgccacttttgcagaatttgccatctctgcataccacaaagccgtctccattgc |
56149851 |
T |
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| Q |
107 |
agcctttgtttcctcaacagatttcaggttagcttccacctttatgtctaattcatttttccttgtgtacattccttgcaactcagccatgataactgcc |
206 |
Q |
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| T |
56149850 |
agcctttgtttcctcaacagatttcaggttagcttccacctttatgtctaattcatttttccttgtgtacattccttgcaactcagccatgataactgcc |
56149751 |
T |
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| Q |
207 |
tctttcttttctgccaattcttggtattccttcacttttccattcagtgactcaaactcttcctttgacatcctgatctttccgctgaattttgaaatcg |
306 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
56149750 |
tctttcttttctgccaattcttggtattccttcacttttccattcagtgactcaaactcttcctttgacatcctgatctttccgctgaattttgaaatcg |
56149651 |
T |
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| Q |
307 |
agagtctactttgcacgtcggagataatcttcatctctttaatggctttttgttctgctgctt |
369 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
56149650 |
agagtctactttgcacgtcggagataatcttcatctctttaatggctttttgttctgctgctt |
56149588 |
T |
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