View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1732-Insertion-21 (Length: 303)
Name: NF1732-Insertion-21
Description: NF1732
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1732-Insertion-21 |
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Alignment Details
Target: chr6 (Bit Score: 193; Significance: 1e-105; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 67 - 275
Target Start/End: Original strand, 1289895 - 1290102
Alignment:
| Q |
67 |
ttttgtttccatttggttcaagtttgagaaggattctattaaatttgatagaatgatagggatgtaaacaaggcatgcttgtccaccagaagtccatagt |
166 |
Q |
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| T |
1289895 |
ttttttttccatttggttcaagtttgagaaggattctattaaatttgatagaatgatagggatgtaaacaaggcatgct-gtccaccagaagtccatagt |
1289993 |
T |
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| Q |
167 |
taagcaaactaaatgtttgtttagtaagacatatgattgagcttatgacttataatttataagttcgtatgattaaaaacaacttgtttttaataataca |
266 |
Q |
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| T |
1289994 |
taagcaaactaaatgtttgtttagtaagacatatgattaagcttatgacttataatttataagttcgtatgattaaaaacaacttgtttttaataataca |
1290093 |
T |
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| Q |
267 |
gtaaaacgt |
275 |
Q |
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| T |
1290094 |
gtaaaacgt |
1290102 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 8 - 185
Target Start/End: Original strand, 1287883 - 1288058
Alignment:
| Q |
8 |
cacttcataaccaaatttttttattgtggtagttgtggatattttagnnnnnnnnnnngttttgtttccatttggttcaagtttgagaaggattctatta |
107 |
Q |
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| T |
1287883 |
cacttcataactagatttatttattgtggtagttgtggatattttagtttttttttt--tttttttttcgtttggttcaagtttgagtatgaatatatta |
1287980 |
T |
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| Q |
108 |
aatttgatagaatgatagggatgtaaacaaggcatgcttgtccaccagaagtccatagttaagcaaactaaatgtttg |
185 |
Q |
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| T |
1287981 |
gatttgatagaatgatatggatgtaaacaaggcatgcttgtccgccagaagtccatagttaagctaactaaatgtttg |
1288058 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 8 - 54
Target Start/End: Original strand, 1289826 - 1289874
Alignment:
| Q |
8 |
cacttcataaccaaattttt--ttattgtggtagttgtggatattttag |
54 |
Q |
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| T |
1289826 |
cacttcataaccaaatttttatttattgtggtagttgtggatattttag |
1289874 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 180 - 245
Target Start/End: Complemental strand, 11653903 - 11653837
Alignment:
| Q |
180 |
tgtttgtttagtaagacatatgattgagcttat-gacttataatttataagttcgtatgattaaaaa |
245 |
Q |
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| T |
11653903 |
tgtttgtttggtaagacataagaatgagcttattgacttatagcttataatctcgtatgattaaaaa |
11653837 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 184 - 240
Target Start/End: Complemental strand, 29517544 - 29517488
Alignment:
| Q |
184 |
tgtttagtaagacatatgattgagcttatgacttataatttataagttcgtatgatt |
240 |
Q |
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| T |
29517544 |
tgtttggtaagacataaatttgagcttatgactcataatttataagctcatatgatt |
29517488 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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