View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1732-Insertion-24 (Length: 236)
Name: NF1732-Insertion-24
Description: NF1732
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1732-Insertion-24 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 219; Significance: 1e-120; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 6 - 236
Target Start/End: Complemental strand, 30157199 - 30156969
Alignment:
| Q |
6 |
caaaaacaaggtacaagctgcgagatgttactgacgttatcaagccctcaagtttgattatgtttggatggtcgagcctacgcaaaatatgtatttccct |
105 |
Q |
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| T |
30157199 |
caaaaacaaggtacaagctgcgagatgtttctgaggttatcaagccctcaagtttgattatgtttggatggtcgagcctacgcaaaatatgtatttccct |
30157100 |
T |
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| Q |
106 |
tgccataaacttgacactcccaggatcaagattatcaaaccgcaccctcttcaatgcaacaatcttttgattagtcacatcacgagctttataaacagta |
205 |
Q |
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| T |
30157099 |
tgccataaacttgacactctcaggatcaagattatcaaaccgcaccctcttcaatgcaacaatcttttgattagtcacatcacgagctttataaacagta |
30157000 |
T |
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| Q |
206 |
ctataagttccttgcccaatctgcataacgg |
236 |
Q |
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| T |
30156999 |
ctataagttccttgcccaatctgcataacgg |
30156969 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 74; Significance: 4e-34; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 6 - 230
Target Start/End: Complemental strand, 38538558 - 38538334
Alignment:
| Q |
6 |
caaaaacaaggtacaagctgcgagatgttactgacgttatcaagccctcaagtttgattatgtttggatggtcgagcctacgca-aaatatgtatttccc |
104 |
Q |
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||||||||||||||||||||||||| | || |||||||| ||||| | || |||| ||||||||||| |||||||||| ||| ||| ||||||| |
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| T |
38538558 |
caaaaacaaggtacaagctgcgagaattcttcgatgttatcaatccctccaactttattacatttggatggtcaagcctacgcagaaaaatg-atttccc |
38538460 |
T |
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| Q |
105 |
ttgccataaacttgacactcccaggatcaagattatcaaaccgcaccctcttcaatgcaacaatcttttgattagtcacatcacgagctttataaacagt |
204 |
Q |
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| T |
38538459 |
ttgccatgaacttgacactctcatgatcaagattatcaaaacgcacccgcttcaaggcaaccaccttttggctaatcaaatcacgtgccttaaaaacagt |
38538360 |
T |
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| Q |
205 |
actataagttccttgcccaatctgca |
230 |
Q |
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| T |
38538359 |
gctgtaagttccttggccaatctgca |
38538334 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 46 - 230
Target Start/End: Original strand, 33271057 - 33271241
Alignment:
| Q |
46 |
caagccctcaagtttgattatgtttggatggtcgagcctacgcaaaatatgtatttcccttgccataaacttgacactcccaggatcaagattatcaaac |
145 |
Q |
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| T |
33271057 |
caagccctccagttttatgacatttggatgatcaagcctacgtagaatgtgaatttcccttgccatgaagcgaacactctcaggctcaagattatcaaac |
33271156 |
T |
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| Q |
146 |
cgcaccctcttcaatgcaacaatcttttgattagtc-acatcacgagctttataaacagtactataagttccttgcccaatctgca |
230 |
Q |
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| T |
33271157 |
ctcactttcttcaaagcaacaatc-tttctttgttcaagatcacgagctctataaacattactataagttccctggccaatctgca |
33271241 |
T |
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