View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1732-Insertion-6 (Length: 872)
Name: NF1732-Insertion-6
Description: NF1732
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1732-Insertion-6 |
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| [»] scaffold0072 (1 HSPs) |
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| [»] scaffold0086 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 662; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 662; E-Value: 0
Query Start/End: Original strand, 32 - 759
Target Start/End: Complemental strand, 4003249 - 4002524
Alignment:
| Q |
32 |
tctatacccattctcgatttatttcttttgggaccaaagcaaaaggcaaagggatgcagacaggcactaatctctcacataaacatcgaattaatatgaa |
131 |
Q |
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||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
4003249 |
tctatacccattctcgatttatttcttttgggaccaaagaaaaaggcaaagggatgcagacaggcactaatctctcacataaacatcaaattaatatgaa |
4003150 |
T |
|
| Q |
132 |
ttgtgatacaatgacatttcatatttccatttaattgcgatgcaagagtcaaacgagctactatcatttcttttgaaaaggcaaagaaatatgcttcaaa |
231 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4003149 |
ttgtgatacaatgacatttcatatttccatttaattgcgatgcaagagtcaaacgagctactatcatttcttttgaaaaggcaaagaaatatgcttcaaa |
4003050 |
T |
|
| Q |
232 |
ttagaatcttaagtctatgctggcagaacaagagaaagctgaatccaaggctattgagaaagaaaattctacccaaagtattttttgaggcttaaagtga |
331 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
4003049 |
ttagaatcttaagtctatgctggcagaacaagagaaagctgaatccaaggctattgaga--gaaaattctacccaaagtattttttgaggcttaaagtga |
4002952 |
T |
|
| Q |
332 |
aaattcagatatatcttttaaaatttattactgttttgattataaaactatattttatctttattgtaaattatagagcttttgtactttaaaatataat |
431 |
Q |
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|||||||||| |||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
4002951 |
aaattcagatgtatcttttaaaatttatttctgttt-gattataaaactatattttatctttattgtaaattatagagtttttgtactttaaaatataat |
4002853 |
T |
|
| Q |
432 |
tattaaagtggatgtaaaattttgatgtgtgtgaattttatattggagctttatggatttgtttatgagtaaatagacaattactcccgtgtctgtctgt |
531 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||| | |||||| |
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| T |
4002852 |
tattaaagtggatgtaaaattttgatgtgtgtgaattttatattggagctttatggatttgtttaagagtaaataggcaattactcccgtgcccgtctgt |
4002753 |
T |
|
| Q |
532 |
ccgctttttctattgctctaacgtagatatatacttgattatgtttctttgtgtaaattattatatagatattacatcatacacaaatataatttattta |
631 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4002752 |
ccgctttttctattgctctaacgtagatatatacttgattatgtttctttgtgtaaattattatatagatattacatcatacacaaatataatttattta |
4002653 |
T |
|
| Q |
632 |
acacgtataagagtaatatataaaacttatgacttgtgaaataaaatctgaagaatac-aaactcttggtttaatttagatctgatagtttgatagttgt |
730 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
4002652 |
acacgtataagagtaatatataaaacttatgacttgtgaaataaaatctgaagaatacaaaactcttggtttaatttagatctgatagtttgatagttgt |
4002553 |
T |
|
| Q |
731 |
ctgttatcactgcattgtgcagattgctg |
759 |
Q |
| |
|
|||||||||||||||| |||||||||||| |
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| T |
4002552 |
ctgttatcactgcattttgcagattgctg |
4002524 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 39; Significance: 0.000000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 514 - 596
Target Start/End: Original strand, 22216441 - 22216523
Alignment:
| Q |
514 |
actcccgtgtctgtctgtccgctttttctattgctctaacgtagatatatacttgattatgtttctttgtgtaaattattata |
596 |
Q |
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|||||||| |||||||||||| |||||||||||| |||||||| ||| || |||||||| ||| ||||| ||||||| |||| |
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| T |
22216441 |
actcccgtatctgtctgtccgttttttctattgcgctaacgtatgtatgtatttgattatatttttttgtataaattaatata |
22216523 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 529 - 601
Target Start/End: Original strand, 23459204 - 23459276
Alignment:
| Q |
529 |
tgtccgctttttctattgctctaacgtagatatatacttgattatgtttctttgtgtaaattattatatagat |
601 |
Q |
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|||||||| |||||| ||| |||||||| ||||||||||| ||||||||||||| |||||| ||||||||| |
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| T |
23459204 |
tgtccgctctttctactgcgctaacgtatgtatatacttgactatgtttctttgtataaattgatatatagat |
23459276 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0072 (Bit Score: 33; Significance: 0.000000005; HSPs: 1)
Name: scaffold0072
Description:
Target: scaffold0072; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 514 - 570
Target Start/End: Original strand, 46302 - 46358
Alignment:
| Q |
514 |
actcccgtgtctgtctgtccgctttttctattgctctaacgtagatatatacttgat |
570 |
Q |
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| T |
46302 |
actcccgtgcccgtctgtccgctttttctactgcgctaacgtatttatatacttgat |
46358 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 531 - 598
Target Start/End: Original strand, 23814517 - 23814584
Alignment:
| Q |
531 |
tccgctttttctattgctctaacgtagatatatacttgattatgtttctttgtgtaaattattatata |
598 |
Q |
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||||||||||||| |||||||||||| |||||| || ||| ||||||||| | ||||||| |||||| |
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| T |
23814517 |
tccgctttttctactgctctaacgtatttatatattttattgtgtttctttctataaattaatatata |
23814584 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0086 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: scaffold0086
Description:
Target: scaffold0086; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 517 - 570
Target Start/End: Complemental strand, 42510 - 42457
Alignment:
| Q |
517 |
cccgtgtctgtctgtccgctttttctattgctctaacgtagatatatacttgat |
570 |
Q |
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|||||| | |||||||||||||||||| ||| |||||||| |||||||||||| |
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| T |
42510 |
cccgtgcccgtctgtccgctttttctagtgcgctaacgtatgtatatacttgat |
42457 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 526 - 583
Target Start/End: Original strand, 1136160 - 1136217
Alignment:
| Q |
526 |
gtctgtccgctttttctattgctctaacgtagatatatacttgattatgtttctttgt |
583 |
Q |
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||||||||| |||||||| ||| |||||||| |||||||| ||||||||||||||| |
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| T |
1136160 |
gtctgtccgttttttctactgcgctaacgtatgcatatacttaattatgtttctttgt |
1136217 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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