View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17320_low_1 (Length: 449)

Name: NF17320_low_1
Description: NF17320
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17320_low_1
NF17320_low_1
[»] chr4 (9 HSPs)
chr4 (12-434)||(7450831-7451255)
chr4 (12-85)||(24627329-24627402)
chr4 (12-71)||(1604740-1604798)
chr4 (12-95)||(20327048-20327130)
chr4 (12-61)||(2895185-2895234)
chr4 (12-61)||(5599246-5599295)
chr4 (12-61)||(5908492-5908541)
chr4 (12-61)||(6735783-6735832)
chr4 (12-56)||(3329504-3329548)
[»] chr7 (8 HSPs)
chr7 (12-95)||(41572632-41572715)
chr7 (12-61)||(19802243-19802292)
chr7 (12-61)||(4340539-4340588)
chr7 (12-61)||(21959250-21959299)
chr7 (16-145)||(2934624-2934751)
chr7 (12-61)||(42786543-42786592)
chr7 (12-61)||(48477394-48477443)
chr7 (12-52)||(3737903-3737943)
[»] scaffold0158 (1 HSPs)
scaffold0158 (12-61)||(31-80)
[»] chr3 (6 HSPs)
chr3 (12-72)||(2747115-2747175)
chr3 (12-61)||(14521689-14521738)
chr3 (12-61)||(19359910-19359959)
chr3 (12-61)||(18111086-18111135)
chr3 (12-61)||(19440710-19440759)
chr3 (19-72)||(38094202-38094254)
[»] chr1 (8 HSPs)
chr1 (25-100)||(9538700-9538775)
chr1 (12-56)||(7064029-7064073)
chr1 (12-88)||(14150163-14150238)
chr1 (12-61)||(7898985-7899034)
chr1 (12-61)||(15088256-15088305)
chr1 (12-61)||(22207301-22207350)
chr1 (12-61)||(22210864-22210913)
chr1 (12-61)||(51843938-51843987)
[»] chr8 (4 HSPs)
chr8 (12-86)||(25004031-25004105)
chr8 (12-61)||(5557119-5557168)
chr8 (12-61)||(20811060-20811109)
chr8 (13-62)||(24715875-24715924)
[»] chr6 (6 HSPs)
chr6 (12-61)||(28144384-28144433)
chr6 (12-61)||(31113671-31113720)
chr6 (12-71)||(6406191-6406250)
chr6 (12-61)||(5131380-5131429)
chr6 (12-61)||(33301168-33301217)
chr6 (12-61)||(34256233-34256282)
[»] chr5 (1 HSPs)
chr5 (12-61)||(41527873-41527922)
[»] chr2 (2 HSPs)
chr2 (12-88)||(18010880-18010955)
chr2 (12-58)||(31347425-31347471)


Alignment Details
Target: chr4 (Bit Score: 354; Significance: 0; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 354; E-Value: 0
Query Start/End: Original strand, 12 - 434
Target Start/End: Complemental strand, 7451255 - 7450831
Alignment:
Q  12 ataggtggaacttactgagaccttatgtctcaccccaatcctttttatttcttttcagatacgtaggttgctcgtgagaagggtgaacaaatggaagttg 111  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||    
T  7451255 ataggtggaacttactgagaccttatgtctcaccccaatcctttttatttcttttcagatacgtaggttgctcgtgagaagggtgaacagaaggaagttg 7451156  T
Q  112 aataaattatgtttgcattgtctggtactagtataatatttgtcatctgtcatttattatgtacttgctagtagtactttagtattcagttatggcgt-- 209  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||      
T  7451155 aataaattatgtttacattgtctggtactagtataatatttgtcatctgtca-ttattatgtacttgctagcagtactttagtattcagttatggcgtat 7451057  T
Q  210 --atgtacttgtcagtagtattttatcagatgtacgatacttatattcgttgtactctattaagacaaatttgtatgttgtagttttaatgtatcgagta 307  Q
      ||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||| |||||    
T  7451056 ggatgcacttgtcagtagtattttatcaaatgtacgatacttatattcgttgtactctattaagaaaaatttgtatgttttagttttaatgtat-gagta 7450958  T
Q  308 ctaagattaattgggatttgggggttttgttttatgaatgggggaaatcatgaatcatgcatagagttttaggtatttgatgttatgcatgttgaattga 407  Q
    ||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7450957 ctaagtttgattgggatttgggggttttgttttatgaatgggggaaatcatgaatcatgcatagagttttaggtatttgatgttatgcatgttgaattga 7450858  T
Q  408 tgtatgctgcataatgaagttaagtat 434  Q
    |||||||||||||||||||||||||||    
T  7450857 tgtatgctgcataatgaagttaagtat 7450831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 12 - 85
Target Start/End: Complemental strand, 24627402 - 24627329
Alignment:
Q  12 ataggtggaacttactgagaccttatgtctcaccccaatcctttttatttcttttcagatacgtaggttgctcg 85  Q
    ||||||||||||  ||||||| | |||| |||||||||||||||||||||  |||||||| | ||||| |||||    
T  24627402 ataggtggaactcgctgagacatcatgtgtcaccccaatcctttttattttatttcagatgcataggtggctcg 24627329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 12 - 71
Target Start/End: Original strand, 1604740 - 1604798
Alignment:
Q  12 ataggtggaacttactgagaccttatgtctcaccccaatcctttttatttcttttcagat 71  Q
    |||||||||||| ||||||||||  ||||||||||||||||  ||||||| |||||||||    
T  1604740 ataggtggaactcactgagacctcctgtctcaccccaatcc-ctttatttattttcagat 1604798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 12 - 95
Target Start/End: Original strand, 20327048 - 20327130
Alignment:
Q  12 ataggtggaacttactgagaccttatgtctcaccccaatcctttttatttcttttcagatacgtaggttgctcgtgagaagggt 95  Q
    |||||||||| | |||||||||||||||||||  |  |||| | |||||||||||||||| || ||||| |||| |||||||||    
T  20327048 ataggtggaagtcactgagaccttatgtctcattcttatcc-tgttatttcttttcagattcgcaggtttctcgcgagaagggt 20327130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 12 - 61
Target Start/End: Original strand, 2895185 - 2895234
Alignment:
Q  12 ataggtggaacttactgagaccttatgtctcaccccaatcctttttattt 61  Q
    |||||||||||| |||||||| |  |||||||||||||||| ||||||||    
T  2895185 ataggtggaactcactgagacatcttgtctcaccccaatcccttttattt 2895234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 12 - 61
Target Start/End: Complemental strand, 5599295 - 5599246
Alignment:
Q  12 ataggtggaacttactgagaccttatgtctcaccccaatcctttttattt 61  Q
    |||| ||||||| |||||||| |  |||||||||||||||||||||||||    
T  5599295 atagatggaactcactgagacatcttgtctcaccccaatcctttttattt 5599246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 12 - 61
Target Start/End: Complemental strand, 5908541 - 5908492
Alignment:
Q  12 ataggtggaacttactgagaccttatgtctcaccccaatcctttttattt 61  Q
    |||||||||||| |||||||| |  |||||||||||||||| ||||||||    
T  5908541 ataggtggaactcactgagacatcttgtctcaccccaatcccttttattt 5908492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 12 - 61
Target Start/End: Original strand, 6735783 - 6735832
Alignment:
Q  12 ataggtggaacttactgagaccttatgtctcaccccaatcctttttattt 61  Q
    |||||||||||| |||||||| | |||||||| |||||||| ||||||||    
T  6735783 ataggtggaactcactgagacatcatgtctcatcccaatccattttattt 6735832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 12 - 56
Target Start/End: Original strand, 3329504 - 3329548
Alignment:
Q  12 ataggtggaacttactgagaccttatgtctcaccccaatcctttt 56  Q
    |||||||||||| |||||||| |  ||||||||||||||||||||    
T  3329504 ataggtggaactcactgagacatcttgtctcaccccaatcctttt 3329548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 12 - 95
Target Start/End: Original strand, 41572632 - 41572715
Alignment:
Q  12 ataggtggaacttactgagaccttatgtctcaccccaatcctttttatttcttttcagatacgtaggttgctcgtgagaagggt 95  Q
    |||||||||||| ||||| ||||||||||||| |||||||| |||  ||||||||||||||   ||||||| | ||||||||||    
T  41572632 ataggtggaactcactgataccttatgtctcatcccaatccatttattttcttttcagataaacaggttgcgcatgagaagggt 41572715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 12 - 61
Target Start/End: Complemental strand, 19802292 - 19802243
Alignment:
Q  12 ataggtggaacttactgagaccttatgtctcaccccaatcctttttattt 61  Q
    |||||||||||| |||||||| || |||||||||||||||||||||||||    
T  19802292 ataggtggaactcactgagacattttgtctcaccccaatcctttttattt 19802243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 12 - 61
Target Start/End: Complemental strand, 4340588 - 4340539
Alignment:
Q  12 ataggtggaacttactgagaccttatgtctcaccccaatcctttttattt 61  Q
    |||||||||||| |||||||| || ||||||||||||||| |||||||||    
T  4340588 ataggtggaactcactgagacattttgtctcaccccaatcatttttattt 4340539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 12 - 61
Target Start/End: Original strand, 21959250 - 21959299
Alignment:
Q  12 ataggtggaacttactgagaccttatgtctcaccccaatcctttttattt 61  Q
    |||||||||||| |||||||| || |||||||||||||||| ||||||||    
T  21959250 ataggtggaactcactgagacattttgtctcaccccaatccattttattt 21959299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 16 - 145
Target Start/End: Complemental strand, 2934751 - 2934624
Alignment:
Q  16 gtggaacttactgagaccttatgtctcaccccaatcctttttatttcttttcagatacgtaggttgctcgtgagaagggtgaacaaatggaagttgaata 115  Q
    |||||||| |||||||| |||||||||  |||||||| |||  |||||||||||||||| | ||| |||| | ||||||| |  | | ||||| |||||     
T  2934751 gtggaactcactgagacattatgtctcgtcccaatccctttc-tttcttttcagatacgcatgttactcgcgggaagggtaagtagaaggaagctgaatt 2934653  T
Q  116 aattatgtttgcattgtctggtactagtat 145  Q
    | ||||| |||||||||||| || ||||||    
T  2934652 atttatg-ttgcattgtctgatattagtat 2934624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 12 - 61
Target Start/End: Original strand, 42786543 - 42786592
Alignment:
Q  12 ataggtggaacttactgagaccttatgtctcaccccaatcctttttattt 61  Q
    |||||||||||| |||||||| |  |||||||||||||||| ||||||||    
T  42786543 ataggtggaactcactgagacatcttgtctcaccccaatcccttttattt 42786592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 12 - 61
Target Start/End: Complemental strand, 48477443 - 48477394
Alignment:
Q  12 ataggtggaacttactgagaccttatgtctcaccccaatcctttttattt 61  Q
    |||||||||||| |||||||| |  |||||||||||||||| ||||||||    
T  48477443 ataggtggaactcactgagacatcttgtctcaccccaatcccttttattt 48477394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 12 - 52
Target Start/End: Original strand, 3737903 - 3737943
Alignment:
Q  12 ataggtggaacttactgagaccttatgtctcaccccaatcc 52  Q
    |||||||||||| |||||||| | |||||||||||||||||    
T  3737903 ataggtggaactcactgagacatcatgtctcaccccaatcc 3737943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0158 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: scaffold0158
Description:

Target: scaffold0158; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 12 - 61
Target Start/End: Original strand, 31 - 80
Alignment:
Q  12 ataggtggaacttactgagaccttatgtctcaccccaatcctttttattt 61  Q
    |||||||||||| |||||||| || |||||||||||||||||||||||||    
T  31 ataggtggaactcactgagacattttgtctcaccccaatcctttttattt 80  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 37; Significance: 0.00000000001; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 12 - 72
Target Start/End: Original strand, 2747115 - 2747175
Alignment:
Q  12 ataggtggaacttactgagaccttatgtctcaccccaatcctttttatttcttttcagata 72  Q
    |||||||||||| |||||||| |  |||||||||||||||| |||||||| ||||||||||    
T  2747115 ataggtggaactcactgagacatcctgtctcaccccaatcccttttatttattttcagata 2747175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 12 - 61
Target Start/End: Original strand, 14521689 - 14521738
Alignment:
Q  12 ataggtggaacttactgagaccttatgtctcaccccaatcctttttattt 61  Q
    |||||||||||| ||| |||| || |||||||||||||||||||||||||    
T  14521689 ataggtggaactcactaagacattttgtctcaccccaatcctttttattt 14521738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 12 - 61
Target Start/End: Original strand, 19359910 - 19359959
Alignment:
Q  12 ataggtggaacttactgagaccttatgtctcaccccaatcctttttattt 61  Q
    |||||||||||| |||||||| || |||||||||||||| ||||||||||    
T  19359910 ataggtggaactcactgagacattttgtctcaccccaattctttttattt 19359959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 12 - 61
Target Start/End: Complemental strand, 18111135 - 18111086
Alignment:
Q  12 ataggtggaacttactgagaccttatgtctcaccccaatcctttttattt 61  Q
    |||||||||||| |||||||| | |||||||||||| |||| ||||||||    
T  18111135 ataggtggaactcactgagacatcatgtctcaccccgatcccttttattt 18111086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 12 - 61
Target Start/End: Complemental strand, 19440759 - 19440710
Alignment:
Q  12 ataggtggaacttactgagaccttatgtctcaccccaatcctttttattt 61  Q
    |||||||||||| |||||||| | |||||||||| |||||| ||||||||    
T  19440759 ataggtggaactcactgagacatcatgtctcacctcaatcccttttattt 19440710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 19 - 72
Target Start/End: Original strand, 38094202 - 38094254
Alignment:
Q  19 gaacttactgagaccttatgtctcaccccaatcctttttatttcttttcagata 72  Q
    ||||| |||||||| |||||||||| | |||||||||| |||||||||||||||    
T  38094202 gaactcactgagacattatgtctcatctcaatcctttt-atttcttttcagata 38094254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 36; Significance: 0.00000000004; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 25 - 100
Target Start/End: Complemental strand, 9538775 - 9538700
Alignment:
Q  25 actgagaccttatgtctcaccccaatcctttttatttcttttcagatacgtaggttgctcgtgagaagggtgaaca 100  Q
    |||||||| || |||| ||||||||| |||||||||  ||||||||||||||||||| | |||| |||||| ||||    
T  9538775 actgagacattgtgtcacaccccaattctttttattctttttcagatacgtaggttgtttgtgataagggtaaaca 9538700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 12 - 56
Target Start/End: Complemental strand, 7064073 - 7064029
Alignment:
Q  12 ataggtggaacttactgagaccttatgtctcaccccaatcctttt 56  Q
    |||||||||||| |||||||| ||||||||||||| |||||||||    
T  7064073 ataggtggaactcactgagacattatgtctcaccctaatcctttt 7064029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 12 - 88
Target Start/End: Original strand, 14150163 - 14150238
Alignment:
Q  12 ataggtggaacttactgagaccttatgtctcaccccaatcctttttatttcttttcagatacgtaggttgctcgtga 88  Q
    |||||||||||| || ||||| | ||||||||||||||||| ||||||||  ||||||||| | |||||| ||||||    
T  14150163 ataggtggaactcaccgagacatcatgtctcaccccaatcc-ttttattttatttcagataagcaggttgatcgtga 14150238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 12 - 61
Target Start/End: Complemental strand, 7899034 - 7898985
Alignment:
Q  12 ataggtggaacttactgagaccttatgtctcaccccaatcctttttattt 61  Q
    |||||||||||| |||||||| |  |||||||||||||||| ||||||||    
T  7899034 ataggtggaactcactgagacatcttgtctcaccccaatcccttttattt 7898985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 12 - 61
Target Start/End: Complemental strand, 15088305 - 15088256
Alignment:
Q  12 ataggtggaacttactgagaccttatgtctcaccccaatcctttttattt 61  Q
    |||||||||||| |||||||| |  |||||||||||||||| ||||||||    
T  15088305 ataggtggaactcactgagacatcctgtctcaccccaatcccttttattt 15088256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 12 - 61
Target Start/End: Complemental strand, 22207350 - 22207301
Alignment:
Q  12 ataggtggaacttactgagaccttatgtctcaccccaatcctttttattt 61  Q
    |||||||||||| |||||||| |  |||||||||||||||| ||||||||    
T  22207350 ataggtggaactcactgagacatcctgtctcaccccaatcccttttattt 22207301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 12 - 61
Target Start/End: Complemental strand, 22210913 - 22210864
Alignment:
Q  12 ataggtggaacttactgagaccttatgtctcaccccaatcctttttattt 61  Q
    |||||||||||| |||||||| |  |||||||||||||||| ||||||||    
T  22210913 ataggtggaactcactgagacatcctgtctcaccccaatcccttttattt 22210864  T

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Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 12 - 61
Target Start/End: Complemental strand, 51843987 - 51843938
Alignment:
Q  12 ataggtggaacttactgagaccttatgtctcaccccaatcctttttattt 61  Q
    |||||||||||| |||||||| | |||||||||||||||  |||||||||    
T  51843987 ataggtggaactcactgagacatcatgtctcaccccaattatttttattt 51843938  T

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Target: chr8 (Bit Score: 35; Significance: 0.0000000002; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 12 - 86
Target Start/End: Original strand, 25004031 - 25004105
Alignment:
Q  12 ataggtggaacttactgagaccttatgtctcaccccaatcctttttatttcttttcagatacgtaggttgctcgt 86  Q
    |||||||||||| |||||||| || |||||||||||||||| |||  |||  |||||||||  ||||||||||||    
T  25004031 ataggtggaactcactgagacattctgtctcaccccaatccctttatttttatttcagatatataggttgctcgt 25004105  T

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Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 12 - 61
Target Start/End: Complemental strand, 5557168 - 5557119
Alignment:
Q  12 ataggtggaacttactgagaccttatgtctcaccccaatcctttttattt 61  Q
    |||||||||||| |||||||| || |||||||||||||| ||||||||||    
T  5557168 ataggtggaactcactgagacattttgtctcaccccaattctttttattt 5557119  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 12 - 61
Target Start/End: Original strand, 20811060 - 20811109
Alignment:
Q  12 ataggtggaacttactgagaccttatgtctcaccccaatcctttttattt 61  Q
    |||||||||||| |||||||| || |||||||||||||||| ||| ||||    
T  20811060 ataggtggaactcactgagacattctgtctcaccccaatccctttcattt 20811109  T

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Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 13 - 62
Target Start/End: Original strand, 24715875 - 24715924
Alignment:
Q  13 taggtggaacttactgagaccttatgtctcaccccaatcctttttatttc 62  Q
    ||||| ||||| |||||||| |||||||||| ||||||||||||| ||||    
T  24715875 taggtagaactcactgagactttatgtctcatcccaatcctttttgtttc 24715924  T

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Target: chr6 (Bit Score: 34; Significance: 0.0000000006; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 12 - 61
Target Start/End: Complemental strand, 28144433 - 28144384
Alignment:
Q  12 ataggtggaacttactgagaccttatgtctcaccccaatcctttttattt 61  Q
    |||||||||||| |||||||| || ||||||| |||||||||||||||||    
T  28144433 ataggtggaactcactgagacattttgtctcagcccaatcctttttattt 28144384  T

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Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 12 - 61
Target Start/End: Original strand, 31113671 - 31113720
Alignment:
Q  12 ataggtggaacttactgagaccttatgtctcaccccaatcctttttattt 61  Q
    |||||||||||| |||||||| | ||||||||||||||||| ||||||||    
T  31113671 ataggtggaactcactgagacatcatgtctcaccccaatcccttttattt 31113720  T

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Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 12 - 71
Target Start/End: Complemental strand, 6406250 - 6406191
Alignment:
Q  12 ataggtggaacttactgagaccttatgtctcaccccaatcctttttatttcttttcagat 71  Q
    ||||||| |||| |||||||| | ||||||||||||||||| ||||||||  ||||||||    
T  6406250 ataggtgcaactcactgagacatcatgtctcaccccaatcccttttattttatttcagat 6406191  T

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Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 12 - 61
Target Start/End: Original strand, 5131380 - 5131429
Alignment:
Q  12 ataggtggaacttactgagaccttatgtctcaccccaatcctttttattt 61  Q
    |||||||||||| |||||||| |  |||||||||||||||| ||||||||    
T  5131380 ataggtggaactcactgagacatcttgtctcaccccaatcccttttattt 5131429  T

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Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 12 - 61
Target Start/End: Original strand, 33301168 - 33301217
Alignment:
Q  12 ataggtggaacttactgagaccttatgtctcaccccaatcctttttattt 61  Q
    |||| ||||||| |||||||| |  |||||||||||||||||||||||||    
T  33301168 atagatggaactcactgagacatcttgtctcaccccaatcctttttattt 33301217  T

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Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 12 - 61
Target Start/End: Original strand, 34256233 - 34256282
Alignment:
Q  12 ataggtggaacttactgagaccttatgtctcaccccaatcctttttattt 61  Q
    |||||||||||| |||||| | || |||||||||||||| ||||||||||    
T  34256233 ataggtggaactcactgaggcattttgtctcaccccaattctttttattt 34256282  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 12 - 61
Target Start/End: Complemental strand, 41527922 - 41527873
Alignment:
Q  12 ataggtggaacttactgagaccttatgtctcaccccaatcctttttattt 61  Q
    |||||||||||| |||||||| || |||||||||||||| ||||||||||    
T  41527922 ataggtggaactcactgagacattttgtctcaccccaattctttttattt 41527873  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 12 - 88
Target Start/End: Complemental strand, 18010955 - 18010880
Alignment:
Q  12 ataggtggaacttactgagaccttatgtctcaccccaatcctttttatttcttttcagatacgtaggttgctcgtga 88  Q
    |||||||||||| |||||||| |  ||||||||||||||||  |||||||| |||||||||   |||||||||||||    
T  18010955 ataggtggaactcactgagacatcctgtctcaccccaatcc-ctttatttcatttcagataaacaggttgctcgtga 18010880  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 12 - 58
Target Start/End: Original strand, 31347425 - 31347471
Alignment:
Q  12 ataggtggaacttactgagaccttatgtctcaccccaatccttttta 58  Q
    |||||||||||| |||||||| |  ||||||||||||||||||||||    
T  31347425 ataggtggaactcactgagacatcctgtctcaccccaatccttttta 31347471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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