View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17320_low_2 (Length: 291)
Name: NF17320_low_2
Description: NF17320
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17320_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 272; Significance: 1e-152; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 1 - 276
Target Start/End: Original strand, 31726819 - 31727094
Alignment:
| Q |
1 |
ctccttcaccttctataatgatctcaactatatggaattgggttgtaatcattattatgttaaaaatcatcaagtgtacttccttgtaagagattgaaga |
100 |
Q |
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| T |
31726819 |
ctccttcaccttctataatgatctcaactatatggaattgggttgtaatcattattatgttaaaaatcatcaagtgtacttccttgtaagagattgaaga |
31726918 |
T |
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| Q |
101 |
ccaacaacatttcttcattgccatcgtgttaggaaagaaagatcggatggtgatgggatcacaatctatggtgcggctcatatttgggtggatcattgtt |
200 |
Q |
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| T |
31726919 |
ccaacaacatttcttcattgccatcgtgttaggaaagaaagatcggatggtgatgggatcacaatctatggtgcggctcatatttgggtggatcattgtt |
31727018 |
T |
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| Q |
201 |
ccttgtcaaattgttttgatggtttgattgatgttgttcatggatcaacggctgttactatttctaataattatat |
276 |
Q |
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| T |
31727019 |
ccttgtcaaattgttttgatggtttcattgatgttgttcatggatcaacggctgttactatttctaataattatat |
31727094 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 144; E-Value: 9e-76
Query Start/End: Original strand, 121 - 276
Target Start/End: Original strand, 39082302 - 39082457
Alignment:
| Q |
121 |
ccatcgtgttaggaaagaaagatcggatggtgatgggatcacaatctatggtgcggctcatatttgggtggatcattgttccttgtcaaattgttttgat |
220 |
Q |
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| T |
39082302 |
ccatcgtgttaggaaagaaagatcggatggtgatgggattacaatatatggtgcggctcatatttgggtggatcattgttccttgtcaaattgttttgac |
39082401 |
T |
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| Q |
221 |
ggtttgattgatgttgttcatggatcaacggctgttactatttctaataattatat |
276 |
Q |
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| T |
39082402 |
ggtttgattgatgttgttcatggatcaacggctgttactatttctaataattatat |
39082457 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 217 - 272
Target Start/End: Original strand, 39075949 - 39076004
Alignment:
| Q |
217 |
tgatggtttgattgatgttgttcatggatcaacggctgttactatttctaataatt |
272 |
Q |
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|||||| || ||||||||| |||||||||| || ||| |||||||||||||||||| |
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| T |
39075949 |
tgatggattaattgatgttattcatggatctacagctattactatttctaataatt |
39076004 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 178 - 276
Target Start/End: Original strand, 43131344 - 43131442
Alignment:
| Q |
178 |
tcatatttgggtggatcattgttccttgtcaaattgttttgatggtttgattgatgttgttcatggatcaacggctgttactatttctaataattatat |
276 |
Q |
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| T |
43131344 |
tcatgtttgggtggatcattgttctttgtctaactgtaatgatggtttgattgatgctattcatgggtccactgcaattaccatctctaacaattatat |
43131442 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 179 - 276
Target Start/End: Complemental strand, 7593472 - 7593375
Alignment:
| Q |
179 |
catatttgggtggatcattgttccttgtcaaattgttttgatggtttgattgatgttgttcatggatcaacggctgttactatttctaataattatat |
276 |
Q |
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| T |
7593472 |
catatttggattgatcattgttctttgtctaattgtcgtgatggtcttattgatgttatacatggatctaatgctattactatttcaaataactatat |
7593375 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 84 - 122
Target Start/End: Original strand, 34522974 - 34523012
Alignment:
| Q |
84 |
ttgtaagagattgaagaccaacaacatttcttcattgcc |
122 |
Q |
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| T |
34522974 |
ttgtaagagattgaagactaataacatttcttcattgcc |
34523012 |
T |
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