View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17321_high_10 (Length: 245)

Name: NF17321_high_10
Description: NF17321
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17321_high_10
NF17321_high_10
[»] chr1 (11 HSPs)
chr1 (17-236)||(9299773-9299992)
chr1 (17-236)||(9257718-9257936)
chr1 (17-236)||(9466943-9467162)
chr1 (17-236)||(9242749-9242968)
chr1 (74-236)||(9364076-9364238)
chr1 (74-236)||(9337217-9337379)
chr1 (21-207)||(8962012-8962198)
chr1 (44-207)||(8939085-8939248)
chr1 (44-207)||(8926659-8926822)
chr1 (44-168)||(9438005-9438129)
chr1 (44-168)||(9420922-9421046)
[»] chr3 (1 HSPs)
chr3 (17-236)||(9171176-9171395)
[»] scaffold0690 (1 HSPs)
scaffold0690 (17-234)||(1287-1504)
[»] chr6 (1 HSPs)
chr6 (17-234)||(15910602-15910819)


Alignment Details
Target: chr1 (Bit Score: 216; Significance: 1e-119; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 17 - 236
Target Start/End: Complemental strand, 9299992 - 9299773
Alignment:
Q  17 tccttcccatctccttcagcgttattgagcatcttaacagcaacttgaatttgacttgataatttacctttgtaaacagctccatgagctccttctccga 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9299992 tccttcccatctccttcagcgttattgagcatcttaacagcaacttgaatttgacttgataatttacctttgtaaacagctccatgagctccttctccga 9299893  T
Q  117 tcttatccttaaatttgtttgtaattctctttatgtcagcataggagaatctggttggctttaaagcctgataatccttcaaaaagttttcgattctttc 216  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  9299892 tcttatccttaaatttgtttgtaattctctttatgtcagcataggagaatctggttggctttaaagccttataatccttcaaaaagttttcgattctttc 9299793  T
Q  217 atgatcttcgcctttcatct 236  Q
    ||||||||||||||||||||    
T  9299792 atgatcttcgcctttcatct 9299773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 17 - 236
Target Start/End: Original strand, 9257718 - 9257936
Alignment:
Q  17 tccttcccatctccttcagcgttattgagcatcttaacagcaacttgaatttgacttgataatttacctttgtaaacagctccatgagctccttctccga 116  Q
    ||||||||||||||||| |||||||||| |||||||||||||||| ||||||||||||||||||  ||||||||||||||||| ||||||||||||||||    
T  9257718 tccttcccatctccttctgcgttattgatcatcttaacagcaactagaatttgacttgataattg-cctttgtaaacagctccttgagctccttctccga 9257816  T
Q  117 tcttatccttaaatttgtttgtaattctctttatgtcagcataggagaatctggttggctttaaagcctgataatccttcaaaaagttttcgattctttc 216  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  9257817 tcttatccttaaatttgtttgtaattctcttgatgtcagcataggagaatctggttggctttaaagccttataatccttcaaaaagttttcgattctttc 9257916  T
Q  217 atgatcttcgcctttcatct 236  Q
    ||||||||||||||||||||    
T  9257917 atgatcttcgcctttcatct 9257936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 17 - 236
Target Start/End: Original strand, 9466943 - 9467162
Alignment:
Q  17 tccttcccatctccttcagcgttattgagcatcttaacagcaacttgaatttgacttgataatttacctttgtaaacagctccatgagctccttctccga 116  Q
    ||||| |||||||| |||| |||||||||||||||||| |||||  ||||||| ||||| ||||||||||||||||||||||||||||||||||||||||    
T  9466943 tccttaccatctccctcagtgttattgagcatcttaacggcaacgagaatttggcttgacaatttacctttgtaaacagctccatgagctccttctccga 9467042  T
Q  117 tcttatccttaaatttgtttgtaattctctttatgtcagcataggagaatctggttggctttaaagcctgataatccttcaaaaagttttcgattctttc 216  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |    
T  9467043 tcttatccttaaatttgtttgtaattctctttatgtcagcataggagaatctggttggctttaaagccttataatccttcaaaaagttttcgattcttac 9467142  T
Q  217 atgatcttcgcctttcatct 236  Q
    ||||||||||||||||||||    
T  9467143 atgatcttcgcctttcatct 9467162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 17 - 236
Target Start/End: Original strand, 9242749 - 9242968
Alignment:
Q  17 tccttcccatctccttcagcgttattgagcatcttaacagcaacttgaatttgacttgataatttacctttgtaaacagctccatgagctccttctccga 116  Q
    |||||||||||| | || || ||||| || ||||| || || ||| |||||||  | |||||||||||||| ||||||||||||||||  ||||| || |    
T  9242749 tccttcccatcttcctctgcattattaagaatcttcacggctactagaatttggttcgataatttacctttataaacagctccatgagtcccttcgccta 9242848  T
Q  117 tcttatccttaaatttgtttgtaattctctttatgtcagcataggagaatctggttggctttaaagcctgataatccttcaaaaagttttcgattctttc 216  Q
    ||||||| | |||||| |||||||||||||||||||| ||||| ||||| || |||||||||||||||   |||||||||||||||||||| ||||||      
T  9242849 tcttatcttcaaatttatttgtaattctctttatgtctgcataagagaacctagttggctttaaagccctgtaatccttcaaaaagttttcaattcttgt 9242948  T
Q  217 atgatcttcgcctttcatct 236  Q
    ||||||||| | ||||||||    
T  9242949 atgatcttcacttttcatct 9242968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 74 - 236
Target Start/End: Complemental strand, 9364238 - 9364076
Alignment:
Q  74 gataatttacctttgtaaacagctccatgagctccttctccgatcttatccttaaatttgtttgtaattctctttatgtcagcataggagaatctggttg 173  Q
    ||||| |||||||| ||||||||||||||||| ||||| || |||||||| |||||||| |||||||||||||||| ||| ||||| ||||| || ||||    
T  9364238 gataacttacctttataaacagctccatgagccccttcgcctatcttatctttaaatttatttgtaattctctttaagtctgcataagagaacctagttg 9364139  T
Q  174 gctttaaagcctgataatccttcaaaaagttttcgattctttcatgatcttcgcctttcatct 236  Q
    |||||||||||   |||||||||||||||||||| ||||||  ||||||||||| ||||||||    
T  9364138 gctttaaagccctgtaatccttcaaaaagttttcaattcttgtatgatcttcgcttttcatct 9364076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 74 - 236
Target Start/End: Complemental strand, 9337379 - 9337217
Alignment:
Q  74 gataatttacctttgtaaacagctccatgagctccttctccgatcttatccttaaatttgtttgtaattctctttatgtcagcataggagaatctggttg 173  Q
    ||||| |||||||| ||||||||||||||||| ||||| || |||||||| |||||||| |||||||||||||||| ||| ||||| ||||| || ||||    
T  9337379 gataacttacctttataaacagctccatgagccccttcgcctatcttatctttaaatttatttgtaattctctttaagtctgcataagagaacctagttg 9337280  T
Q  174 gctttaaagc-ctgataatccttcaaaaagttttcgattctttcatgatcttcgcctttcatct 236  Q
    |||||||||| ||| |||||||||||||||||||| ||||||  ||||||||||| ||||||||    
T  9337279 gctttaaagcactg-taatccttcaaaaagttttcaattcttgtatgatcttcgcttttcatct 9337217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 21 - 207
Target Start/End: Complemental strand, 8962198 - 8962012
Alignment:
Q  21 tcccatctccttcagcgttattgagcatcttaacagcaacttgaatttgacttgataatttacctttgtaaacagctccatgagctccttctccgatctt 120  Q
    ||||||||||||| |  ||||| |||||||| ||||||||  |||||||||| ||||||||||||||||| |||||||||||||||||||| || | |||    
T  8962198 tcccatctccttctgtattattaagcatcttcacagcaacaagaatttgactcgataatttacctttgtagacagctccatgagctccttcgcccagctt 8962099  T
Q  121 atccttaaatttgtttgtaattctctttatgtcagcataggagaatctggttggctttaaagcctgataatccttcaaaaagttttc 207  Q
     ||||| ||||  |  ||||||||||| || || ||||| || ||||| ||||||||| | || | |||||||||||||||||||||    
T  8962098 ttccttgaattgatcagtaattctcttgatatcggcataagaaaatctagttggctttgacgcttcataatccttcaaaaagttttc 8962012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 44 - 207
Target Start/End: Complemental strand, 8939248 - 8939085
Alignment:
Q  44 agcatcttaacagcaacttgaatttgacttgataatttacctttgtaaacagctccatgagctccttctccgatcttatccttaaatttgtttgtaattc 143  Q
    |||||||| || |||||  |||||||||| |||||||||||||| || |||||||||||||||||||| || | ||| || || ||||  | ||||||||    
T  8939248 agcatcttcacggcaacaagaatttgactcgataatttacctttatagacagctccatgagctccttcccctagcttttctttgaattgatctgtaattc 8939149  T
Q  144 tctttatgtcagcataggagaatctggttggctttaaagcctgataatccttcaaaaagttttc 207  Q
    |||| || || ||||| || ||||| ||||||||| | || |  ||||||||||||||||||||    
T  8939148 tcttgatatctgcataagaaaatcttgttggctttgacgcttcgtaatccttcaaaaagttttc 8939085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 44 - 207
Target Start/End: Complemental strand, 8926822 - 8926659
Alignment:
Q  44 agcatcttaacagcaacttgaatttgacttgataatttacctttgtaaacagctccatgagctccttctccgatcttatccttaaatttgtttgtaattc 143  Q
    |||||||| ||||||||   ||||||| | |||||||||||||| || |||||||||||||||||||| || | ||| || || || |  |  |||||||    
T  8926822 agcatcttcacagcaaccataatttgattcgataatttacctttatagacagctccatgagctccttcgcctagcttttctttgaactgatccgtaattc 8926723  T
Q  144 tctttatgtcagcataggagaatctggttggctttaaagcctgataatccttcaaaaagttttc 207  Q
    |||| || || ||||| || ||||| ||||||||| | || | |||||||||||||||||||||    
T  8926722 tcttgatatctgcataagaaaatctagttggctttgacgcttcataatccttcaaaaagttttc 8926659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 44 - 168
Target Start/End: Original strand, 9438005 - 9438129
Alignment:
Q  44 agcatcttaacagcaacttgaatttgacttgataatttacctttgtaaacagctccatgagctccttctccgatcttatccttaaatttgtttgtaattc 143  Q
    |||||||| ||||| ||  |||||| | | ||||||||||||||| |||| || |||||||||||||| || | ||  ||| |||| || |||||||| |    
T  9438005 agcatcttcacagccacaagaatttcattagataatttacctttgaaaactgcaccatgagctccttcacctaactcttccctaaaattatttgtaatcc 9438104  T
Q  144 tctttatgtcagcataggagaatct 168  Q
    ||||||| |||||||| ||||||||    
T  9438105 tctttatatcagcataagagaatct 9438129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 44 - 168
Target Start/End: Original strand, 9420922 - 9421046
Alignment:
Q  44 agcatcttaacagcaacttgaatttgacttgataatttacctttgtaaacagctccatgagctccttctccgatcttatccttaaatttgtttgtaattc 143  Q
    |||||||| ||||| ||  |||||| | | ||||||||||||||| |||| || |||||||||||||| || | ||  ||| |||| || |||||||| |    
T  9420922 agcatcttcacagccacaagaatttcattagataatttacctttgaaaactgcaccatgagctccttcacctaactcttccctaaaattatttgtaatcc 9421021  T
Q  144 tctttatgtcagcataggagaatct 168  Q
    ||||||| ||| |||| ||||||||    
T  9421022 tctttatatcaacataagagaatct 9421046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 160; Significance: 2e-85; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 17 - 236
Target Start/End: Complemental strand, 9171395 - 9171176
Alignment:
Q  17 tccttcccatctccttcagcgttattgagcatcttaacagcaacttgaatttgacttgataatttacctttgtaaacagctccatgagctccttctccga 116  Q
    |||||||||||||| || | |||||| |||||||||||| ||||| ||||||| ||||||||||||||||||||||||||||||||||||||||| || |    
T  9171395 tccttcccatctccctctgtgttatttagcatcttaacaccaactagaatttggcttgataatttacctttgtaaacagctccatgagctccttcgccta 9171296  T
Q  117 tcttatccttaaatttgtttgtaattctctttatgtcagcataggagaatctggttggctttaaagcctgataatccttcaaaaagttttcgattctttc 216  Q
     ||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||     
T  9171295 acttatccttaaatttatttgtgattctctttatgtcagcataggagaatctggttggctttaaagccttgtaatccttcaaaaagttttcgattctttt 9171196  T
Q  217 atgatcttcgcctttcatct 236  Q
    ||||||||||||||||||||    
T  9171195 atgatcttcgcctttcatct 9171176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0690 (Bit Score: 98; Significance: 2e-48; HSPs: 1)
Name: scaffold0690
Description:

Target: scaffold0690; HSP #1
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 17 - 234
Target Start/End: Complemental strand, 1504 - 1287
Alignment:
Q  17 tccttcccatctccttcagcgttattgagcatcttaacagcaacttgaatttgacttgataatttacctttgtaaacagctccatgagctccttctccga 116  Q
    |||||||||||||| || || ||||| || ||||| || || ||| |||||||  | |||||||||||||| ||||||||||||||||| ||||| || |    
T  1504 tccttcccatctccctctgcattattaagaatcttcacggctactagaatttggttcgataatttacctttataaacagctccatgagccccttccccta 1405  T
Q  117 tcttatccttaaatttgtttgtaattctctttatgtcagcataggagaatctggttggctttaaagcctgataatccttcaaaaagttttcgattctttc 216  Q
    ||||||| |||||||| |||||||||||||| | ||| ||||| ||||| || |||||||||||||||   |||||||||||||||||||| ||||||      
T  1404 tcttatctttaaatttatttgtaattctcttcaagtctgcataagagaacctagttggctttaaagccctgtaatccttcaaaaagttttcaattcttgt 1305  T
Q  217 atgatcttcgcctttcat 234  Q
    ||||||||||||||||||    
T  1304 atgatcttcgcctttcat 1287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 94; Significance: 5e-46; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 17 - 234
Target Start/End: Original strand, 15910602 - 15910819
Alignment:
Q  17 tccttcccatctccttcagcgttattgagcatcttaacagcaacttgaatttgacttgataatttacctttgtaaacagctccatgagctccttctccga 116  Q
    |||||||||||||| || || ||||| || ||||| || || ||| |||||||  | |||||||||||||| ||||||||||||||||| ||||| || |    
T  15910602 tccttcccatctccctctgcattattaagaatcttcacggctactagaatttggttcgataatttacctttataaacagctccatgagccccttccccta 15910701  T
Q  117 tcttatccttaaatttgtttgtaattctctttatgtcagcataggagaatctggttggctttaaagcctgataatccttcaaaaagttttcgattctttc 216  Q
    ||||||| |||||||| ||||||| |||||| | ||| ||||| ||||| || |||||||||||||||   |||||||||||||||||||| ||||||      
T  15910702 tcttatctttaaatttatttgtaaatctcttcaagtctgcataagagaacctagttggctttaaagccctgtaatccttcaaaaagttttcaattcttgt 15910801  T
Q  217 atgatcttcgcctttcat 234  Q
    ||||||||||||||||||    
T  15910802 atgatcttcgcctttcat 15910819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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