View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17321_high_13 (Length: 235)

Name: NF17321_high_13
Description: NF17321
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17321_high_13
NF17321_high_13
[»] chr8 (3 HSPs)
chr8 (103-235)||(18033920-18034053)
chr8 (1-106)||(18033087-18033192)
chr8 (5-89)||(15932079-15932162)
[»] scaffold0333 (1 HSPs)
scaffold0333 (6-102)||(1331-1427)
[»] scaffold0205 (1 HSPs)
scaffold0205 (10-102)||(3819-3911)
[»] scaffold0005 (1 HSPs)
scaffold0005 (1-106)||(199379-199485)
[»] chr7 (2 HSPs)
chr7 (4-106)||(8325158-8325260)
chr7 (5-34)||(9609996-9610025)
[»] chr4 (4 HSPs)
chr4 (1-106)||(14617892-14617998)
chr4 (6-92)||(18420235-18420320)
chr4 (13-102)||(10115705-10115795)
chr4 (55-102)||(17213184-17213231)
[»] scaffold0282 (1 HSPs)
scaffold0282 (1-103)||(20308-20409)
[»] chr2 (1 HSPs)
chr2 (6-102)||(34135624-34135720)
[»] scaffold0111 (1 HSPs)
scaffold0111 (7-106)||(23113-23213)
[»] chr3 (1 HSPs)
chr3 (188-235)||(17504325-17504372)
[»] chr6 (2 HSPs)
chr6 (44-102)||(22544665-22544721)
chr6 (5-34)||(18631023-18631052)
[»] scaffold0327 (1 HSPs)
scaffold0327 (5-34)||(3372-3401)
[»] chr5 (1 HSPs)
chr5 (5-34)||(21224116-21224145)


Alignment Details
Target: chr8 (Bit Score: 122; Significance: 1e-62; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 103 - 235
Target Start/End: Original strand, 18033920 - 18034053
Alignment:
Q  103 acaataaactaatcaaagagatgatatttacacccc-accgattgttatttatttccataagaatcgggaatataaattattagagtaagagaatgtaat 201  Q
    ||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18033920 acaataaaccaatcaaagagatgatatttacacccccaccgattgttatttatttccataagaatcgggaatataaattattagagtaagagaatgtaat 18034019  T
Q  202 tgatattccaaaagaattactctagaaatttatt 235  Q
    ||||||||||||||||||||||||||||||||||    
T  18034020 tgatattccaaaagaattactctagaaatttatt 18034053  T

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Target: chr8; HSP #2
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 1 - 106
Target Start/End: Original strand, 18033087 - 18033192
Alignment:
Q  1 ccaaacaatgtaaaagtacaccttcaattacattctttctaaatcaacaccatatgcattatcaagttttacaatccacacaatcaacaagttacaattc 100  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  18033087 ccaaacaatgtaaaagtacacctccaattacattctttctaaatcaacaccatatgcattatcaagtattacaatccacacaatcaacaagttacaattc 18033186  T
Q  101 aaacaa 106  Q
    ||||||    
T  18033187 aaacaa 18033192  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 5 - 89
Target Start/End: Original strand, 15932079 - 15932162
Alignment:
Q  5 acaatgtaaaagtacaccttcaattacattctttctaaatcaacaccatatgcattatcaag-ttttacaatccacacaatcaaca 89  Q
    ||||||||||||||||||| ||||||||||  ||| |  |||||| ||| ||||||||||||  ||||| ||||||||||||||||    
T  15932079 acaatgtaaaagtacacctccaattacatt-gttcaacttcaacaacatttgcattatcaagcatttac-atccacacaatcaaca 15932162  T

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Target: scaffold0333 (Bit Score: 65; Significance: 1e-28; HSPs: 1)
Name: scaffold0333
Description:

Target: scaffold0333; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 6 - 102
Target Start/End: Complemental strand, 1427 - 1331
Alignment:
Q  6 caatgtaaaagtacaccttcaattacattctttctaaatcaacaccatatgcattatcaagttttacaatccacacaatcaacaagttacaattcaa 102  Q
    ||||||||||||||||||  ||||||||||||  |||||||||||||||||||||||||||||||||||| |||||||| ||||||| | |||||||    
T  1427 caatgtaaaagtacacctctaattacattcttcataaatcaacaccatatgcattatcaagttttacaattcacacaattaacaagtcataattcaa 1331  T

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Target: scaffold0205 (Bit Score: 65; Significance: 1e-28; HSPs: 1)
Name: scaffold0205
Description:

Target: scaffold0205; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 10 - 102
Target Start/End: Complemental strand, 3911 - 3819
Alignment:
Q  10 gtaaaagtacaccttcaattacattctttctaaatcaacaccatatgcattatcaagttttacaatccacacaatcaacaagttacaattcaa 102  Q
    |||||||||||||| |||||||||||||  ||| ||||||| ||||||||||||||||||||||||||||||||||||||||| | |||||||    
T  3911 gtaaaagtacacctccaattacattcttcataagtcaacacaatatgcattatcaagttttacaatccacacaatcaacaagtcataattcaa 3819  T

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Target: scaffold0005 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 106
Target Start/End: Complemental strand, 199485 - 199379
Alignment:
Q  1 ccaaacaatgtaaaagtacaccttcaattacattct-ttctaaatcaacaccatatgcattatcaagttttacaatccacacaatcaacaagttacaatt 99  Q
    ||||||||||||||||||||||| |||||||||| | |||  |||||||||||||  ||||||||||||||||||||||||||||||| |||| | ||||    
T  199485 ccaaacaatgtaaaagtacacctccaattacattttattcgtaatcaacaccatagacattatcaagttttacaatccacacaatcaataagtcataatt 199386  T
Q  100 caaacaa 106  Q
    |||||||    
T  199385 caaacaa 199379  T

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Target: chr7 (Bit Score: 63; Significance: 2e-27; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 4 - 106
Target Start/End: Complemental strand, 8325260 - 8325158
Alignment:
Q  4 aacaatgtaaaagtacaccttcaattacattctttctaaatcaacaccatatgcattatcaagttttacaatccacacaatcaacaagttacaattcaaa 103  Q
    |||||||||||||||||||| ||||||||||  |||  ||||||||||| | || |||||||||||||||||||||||||||||||||| | ||||||||    
T  8325260 aacaatgtaaaagtacacctccaattacatttcttcataatcaacaccacaggcgttatcaagttttacaatccacacaatcaacaagtcaaaattcaaa 8325161  T
Q  104 caa 106  Q
    |||    
T  8325160 caa 8325158  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 5 - 34
Target Start/End: Original strand, 9609996 - 9610025
Alignment:
Q  5 acaatgtaaaagtacaccttcaattacatt 34  Q
    ||||||||||||||||||||||||||||||    
T  9609996 acaatgtaaaagtacaccttcaattacatt 9610025  T

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Target: chr4 (Bit Score: 63; Significance: 2e-27; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 106
Target Start/End: Original strand, 14617892 - 14617998
Alignment:
Q  1 ccaaacaatgtaaaagtacaccttcaattacattct-ttctaaatcaacaccatatgcattatcaagttttacaatccacacaatcaacaagttacaatt 99  Q
    ||||||||||||||||||||||| |||||||||| | |||  |||||||||||||  ||||||||||||||||||||||||||||||| |||| | ||||    
T  14617892 ccaaacaatgtaaaagtacacctccaattacattttattcgtaatcaacaccatagacattatcaagttttacaatccacacaatcaataagtcataatt 14617991  T
Q  100 caaacaa 106  Q
    |||||||    
T  14617992 caaacaa 14617998  T

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Target: chr4; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 6 - 92
Target Start/End: Complemental strand, 18420320 - 18420235
Alignment:
Q  6 caatgtaaaagtacaccttcaattacattctttctaaatcaacaccatatgcattatcaagttttacaatccacacaatcaacaagt 92  Q
    |||||||||||||||||| |||||||||||||  ||| |||||||| |||||||||||||||||||| |||||||||||||||||||    
T  18420320 caatgtaaaagtacacctccaattacattcttcataattcaacaccttatgcattatcaagttttac-atccacacaatcaacaagt 18420235  T

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Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 13 - 102
Target Start/End: Complemental strand, 10115795 - 10115705
Alignment:
Q  13 aaagtacaccttcaattacattctttctaaat-caacaccatatgcattatcaagttttacaatccacacaatcaacaagttacaattcaa 102  Q
    ||||||||||| |||||||||||||  ||||| ||||| ||| ||||||||||||||||   ||||||||||||||||||| | |||||||    
T  10115795 aaagtacacctccaattacattcttcataaattcaacatcatttgcattatcaagtttttacatccacacaatcaacaagtcataattcaa 10115705  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 55 - 102
Target Start/End: Complemental strand, 17213231 - 17213184
Alignment:
Q  55 tgcattatcaagt-tttacaatccacacaatcaacaagttacaattcaa 102  Q
    ||||||||||||| |||||| |||||||||||||||||| |||||||||    
T  17213231 tgcattatcaagtatttaca-tccacacaatcaacaagtcacaattcaa 17213184  T

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Target: scaffold0282 (Bit Score: 59; Significance: 4e-25; HSPs: 1)
Name: scaffold0282
Description:

Target: scaffold0282; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 1 - 103
Target Start/End: Complemental strand, 20409 - 20308
Alignment:
Q  1 ccaaacaatgtaaaagtacaccttcaattacattctttctaaatcaacaccatatgcattatcaagttttacaatccacacaatcaacaagttacaattc 100  Q
    |||| |||| ||||||||||||| |||||||||||||  ||||||||||||||||||||||||||| ||| ||||| ||||||||||||||| | |||||    
T  20409 ccaagcaatataaaagtacacctccaattacattcttcataaatcaacaccatatgcattatcaag-tttccaatctacacaatcaacaagtcataattc 20311  T
Q  101 aaa 103  Q
    |||    
T  20310 aaa 20308  T

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Target: chr2 (Bit Score: 53; Significance: 1e-21; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 6 - 102
Target Start/End: Complemental strand, 34135720 - 34135624
Alignment:
Q  6 caatgtaaaagtacaccttcaattacattctttctaaatcaacaccatatgcattatcaagttttacaatccacacaatcaacaagttacaattcaa 102  Q
    |||| ||||| ||||||| |||||||||||||  ||||||||||||||||||||||| ||||||||||||||||| |||| ||| || | |||||||    
T  34135720 caatataaaactacacctccaattacattcttcataaatcaacaccatatgcattatgaagttttacaatccacataatcgacatgtcataattcaa 34135624  T

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Target: scaffold0111 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: scaffold0111
Description:

Target: scaffold0111; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 7 - 106
Target Start/End: Original strand, 23113 - 23213
Alignment:
Q  7 aatgtaaaagtacaccttcaattacattctttc-taaatcaacaccatatgcattatcaagttttacaatccacacaatcaacaagttacaattcaaaca 105  Q
    ||||||||||||||||| ||| ||||||  ||| ||||||||||||||| ||| ||||||||||||||||||||| ||  ||||||| | ||||||||||    
T  23113 aatgtaaaagtacacctccaactacatttcttcataaatcaacaccataggcactatcaagttttacaatccacataactaacaagtcataattcaaaca 23212  T
Q  106 a 106  Q
    |    
T  23213 a 23213  T

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Target: chr3 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 188 - 235
Target Start/End: Original strand, 17504325 - 17504372
Alignment:
Q  188 taagagaatgtaattgatattccaaaagaattactctagaaatttatt 235  Q
    |||||||||||||||| ||||||||||||||| ||| |||||||||||    
T  17504325 taagagaatgtaattgttattccaaaagaattgctcaagaaatttatt 17504372  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 44 - 102
Target Start/End: Original strand, 22544665 - 22544721
Alignment:
Q  44 tcaacaccatatgcattatcaagttttacaatccacacaatcaacaagttacaattcaa 102  Q
    |||||||||| |||||||| |||||||||| |||||||||||||||||| | |||||||    
T  22544665 tcaacaccat-tgcattatgaagttttaca-tccacacaatcaacaagtcataattcaa 22544721  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 5 - 34
Target Start/End: Complemental strand, 18631052 - 18631023
Alignment:
Q  5 acaatgtaaaagtacaccttcaattacatt 34  Q
    ||||||||||||||||||||||||||||||    
T  18631052 acaatgtaaaagtacaccttcaattacatt 18631023  T

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Target: scaffold0327 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0327
Description:

Target: scaffold0327; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 5 - 34
Target Start/End: Complemental strand, 3401 - 3372
Alignment:
Q  5 acaatgtaaaagtacaccttcaattacatt 34  Q
    ||||||||||||||||||||||||||||||    
T  3401 acaatgtaaaagtacaccttcaattacatt 3372  T

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Target: chr5 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 5 - 34
Target Start/End: Complemental strand, 21224145 - 21224116
Alignment:
Q  5 acaatgtaaaagtacaccttcaattacatt 34  Q
    ||||||||||||||||||||||||||||||    
T  21224145 acaatgtaaaagtacaccttcaattacatt 21224116  T

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