View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17321_high_14 (Length: 234)
Name: NF17321_high_14
Description: NF17321
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17321_high_14 |
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Alignment Details
Target: chr7 (Bit Score: 211; Significance: 1e-116; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 1 - 219
Target Start/End: Original strand, 12333490 - 12333708
Alignment:
| Q |
1 |
gacgtaggtctgcttttggcctggatcaactaaagttaaatggactctctatcaacccacttaaataaaaatatcaaataggaaatgaaacttcatacac |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
12333490 |
gacgtaggtctgcttttggcctggatcaactaaagttaaatggactctctatcaacccacttaaataaaaatatcaaataggaaatgaaacttcatacac |
12333589 |
T |
|
| Q |
101 |
cttaaagttcataagataggaagaaaagagaattttcttgaggtccctagactcatttgcctatcattgaatagattaagtattcaccttatcaatatct |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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|
| T |
12333590 |
cttaaagttcataagataggaagaaaagagaatttttttgaggtccctagactcatttgcctagcattgaatagattaagtattcaccttatcaatatct |
12333689 |
T |
|
| Q |
201 |
caaatccattatggatttt |
219 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
12333690 |
caaatccattatggatttt |
12333708 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 1 - 219
Target Start/End: Complemental strand, 6951245 - 6951027
Alignment:
| Q |
1 |
gacgtaggtctgcttttggcctggatcaactaaagttaaatggactctctatcaacccacttaaataaaaatatcaaataggaaatgaaacttcatacac |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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|
| T |
6951245 |
gacgtaggtctgcttttggcctggatcaactaaagttaaatggactctctatcaacccacttaaataaaaatatcaaataggaaataaaacttcatacac |
6951146 |
T |
|
| Q |
101 |
cttaaagttcataagataggaagaaaagagaattttcttgaggtccctagactcatttgcctatcattgaatagattaagtattcaccttatcaatatct |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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|
| T |
6951145 |
cttaaagttcataagataggaagaaaagagaattttttggaggtccctagactcatttgcctagcattgaatagattaagtattcaccttatcaatatct |
6951046 |
T |
|
| Q |
201 |
caaatccattatggatttt |
219 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
6951045 |
caaatccattatggatttt |
6951027 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 211; Significance: 1e-116; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 1 - 219
Target Start/End: Original strand, 18186844 - 18187062
Alignment:
| Q |
1 |
gacgtaggtctgcttttggcctggatcaactaaagttaaatggactctctatcaacccacttaaataaaaatatcaaataggaaatgaaacttcatacac |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
18186844 |
gacgtaggtctgcttttggcctggatcaactaaagttaaatggactctctatcaacccacttaaataaaaatatcaaataggaaatgaaacttcatacac |
18186943 |
T |
|
| Q |
101 |
cttaaagttcataagataggaagaaaagagaattttcttgaggtccctagactcatttgcctatcattgaatagattaagtattcaccttatcaatatct |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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|
| T |
18186944 |
cttaaagttcataagataggaagaaaagagaatttttttgaggtccctagactcatttgcctagcattgaatagattaagtattcaccttatcaatatct |
18187043 |
T |
|
| Q |
201 |
caaatccattatggatttt |
219 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
18187044 |
caaatccattatggatttt |
18187062 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 37 - 87
Target Start/End: Original strand, 32097845 - 32097895
Alignment:
| Q |
37 |
taaatggactctctatcaacccacttaaataaaaatatcaaataggaaatg |
87 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
32097845 |
taaatggactctctatcaacctacttaaataaaaatatcaaataggaaatg |
32097895 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 211; Significance: 1e-116; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 1 - 219
Target Start/End: Complemental strand, 13242085 - 13241867
Alignment:
| Q |
1 |
gacgtaggtctgcttttggcctggatcaactaaagttaaatggactctctatcaacccacttaaataaaaatatcaaataggaaatgaaacttcatacac |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13242085 |
gacgtaggtctgcttttggcctggatcaactaaagttaaatggactctctatcaacccacttaaataaaaatatcaaataggaaatgaaacttcatacac |
13241986 |
T |
|
| Q |
101 |
cttaaagttcataagataggaagaaaagagaattttcttgaggtccctagactcatttgcctatcattgaatagattaagtattcaccttatcaatatct |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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|
| T |
13241985 |
cttaaagttcataagataggaagaaaagagaatttttttgaggtccctagactcatttgcctagcattgaatagattaagtattcaccttatcaatatct |
13241886 |
T |
|
| Q |
201 |
caaatccattatggatttt |
219 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
13241885 |
caaatccattatggatttt |
13241867 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 1 - 219
Target Start/End: Complemental strand, 54835495 - 54835277
Alignment:
| Q |
1 |
gacgtaggtctgcttttggcctggatcaactaaagttaaatggactctctatcaacccacttaaataaaaatatcaaataggaaatgaaacttcatacac |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
54835495 |
gacgtaggtctgcttttggcctggatcaactaaagttaaatggactctctatcaacccacttaaataaaaatatcaaataggaaatgaaacttcatacac |
54835396 |
T |
|
| Q |
101 |
cttaaagttcataagataggaagaaaagagaattttcttgaggtccctagactcatttgcctatcattgaatagattaagtattcaccttatcaatatct |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
54835395 |
cttaaagttcataagataggaagaaaagagaatttttttgaggtccctagactcatttgcctagcattgaatagattaagtattcaccttatcaatatct |
54835296 |
T |
|
| Q |
201 |
caaatccattatggatttt |
219 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
54835295 |
caaatccattatggatttt |
54835277 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 95 - 219
Target Start/End: Original strand, 29007060 - 29007184
Alignment:
| Q |
95 |
atacaccttaaagttcataagataggaagaaaagagaattttcttgaggtccctagactcatttgcctatcattgaatagattaagtattcaccttatca |
194 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
29007060 |
atacaccttaaagttcataagataggaagaaaagagaatttttttgaggtccctagactcatttgcctagcattgaatagattaagtattcaccttatca |
29007159 |
T |
|
| Q |
195 |
atatctcaaatccattatggatttt |
219 |
Q |
| |
|
||||||||||||||||||||||||| |
|
|
| T |
29007160 |
atatctcaaatccattatggatttt |
29007184 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 108 - 213
Target Start/End: Original strand, 41072838 - 41072942
Alignment:
| Q |
108 |
ttcataagataggaagaaaagagaattttcttgaggtccctagactcatttgcctatcattgaatagattaagtattcaccttatcaatatctcaaatcc |
207 |
Q |
| |
|
|||||||||| ||||||||||||| | | || ||| |||||||||||||||||| |||||||||||| | |||||||||||||||||||| ||||||| |
|
|
| T |
41072838 |
ttcataagat-ggaagaaaagagattatatttttggttcctagactcatttgcctaacattgaatagataaggtattcaccttatcaatatcccaaatcc |
41072936 |
T |
|
| Q |
208 |
attatg |
213 |
Q |
| |
|
|||||| |
|
|
| T |
41072937 |
attatg |
41072942 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 207; Significance: 1e-113; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 1 - 219
Target Start/End: Complemental strand, 39507412 - 39507194
Alignment:
| Q |
1 |
gacgtaggtctgcttttggcctggatcaactaaagttaaatggactctctatcaacccacttaaataaaaatatcaaataggaaatgaaacttcatacac |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39507412 |
gacgtaggtctgcttttggcctggatcaactaaagttaaatggactctctatcaacccacttaaataaaaatatcaaataggaaatgaaacttcatacac |
39507313 |
T |
|
| Q |
101 |
cttaaagttcataagataggaagaaaagagaattttcttgaggtccctagactcatttgcctatcattgaatagattaagtattcaccttatcaatatct |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
39507312 |
cttaaagttcataagataggaagaaaagagaatttttttgaggtccctagactcatttgcctagcattgaatagattaagtattcaccttatcaatatct |
39507213 |
T |
|
| Q |
201 |
caaatccattatggatttt |
219 |
Q |
| |
|
||||||||||||| ||||| |
|
|
| T |
39507212 |
caaatccattatgaatttt |
39507194 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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