View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17321_high_17 (Length: 204)

Name: NF17321_high_17
Description: NF17321
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17321_high_17
NF17321_high_17
[»] chr2 (2 HSPs)
chr2 (1-110)||(43443376-43443489)
chr2 (152-189)||(43443854-43443891)
[»] chr8 (1 HSPs)
chr8 (157-189)||(40789272-40789304)
[»] chr7 (4 HSPs)
chr7 (160-193)||(673436-673469)
chr7 (157-189)||(28309181-28309213)
chr7 (157-189)||(29015331-29015363)
chr7 (157-189)||(31393778-31393810)
[»] chr5 (1 HSPs)
chr5 (157-189)||(42987827-42987859)
[»] chr1 (1 HSPs)
chr1 (157-189)||(16237675-16237707)


Alignment Details
Target: chr2 (Bit Score: 85; Significance: 1e-40; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 1 - 110
Target Start/End: Original strand, 43443376 - 43443489
Alignment:
Q  1 aatcattctatttagcatcaatgatgaatatataat----gacagtgaagagtccattatctccaatagttttgctaagtgggtatccaacatccaataa 96  Q
    ||||||||||||||||||||||||||||||||||||    || ||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||    
T  43443376 aatcattctatttagcatcaatgatgaatatataattaatgatagtgaagagtccattatctgcaaaagttttgctaagtgggtatccaacatccaataa 43443475  T
Q  97 tctaatatcatgtt 110  Q
    ||||||||||||||    
T  43443476 tctaatatcatgtt 43443489  T

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Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 152 - 189
Target Start/End: Original strand, 43443854 - 43443891
Alignment:
Q  152 acgatgatgagattcaatttctcatttccgttggatat 189  Q
    ||||||||||||||||||||||||||||||||| ||||    
T  43443854 acgatgatgagattcaatttctcatttccgttgaatat 43443891  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 157 - 189
Target Start/End: Complemental strand, 40789304 - 40789272
Alignment:
Q  157 gatgagattcaatttctcatttccgttggatat 189  Q
    |||||||||||||||||||||||||||||||||    
T  40789304 gatgagattcaatttctcatttccgttggatat 40789272  T

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Target: chr7 (Bit Score: 30; Significance: 0.00000007; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 160 - 193
Target Start/End: Original strand, 673436 - 673469
Alignment:
Q  160 gagattcaatttctcatttccgttggatattgat 193  Q
    |||||||||||||||||||||||||| |||||||    
T  673436 gagattcaatttctcatttccgttgggtattgat 673469  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 157 - 189
Target Start/End: Complemental strand, 28309213 - 28309181
Alignment:
Q  157 gatgagattcaatttctcatttccgttggatat 189  Q
    ||||||||| |||||||||||||||||||||||    
T  28309213 gatgagatttaatttctcatttccgttggatat 28309181  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 157 - 189
Target Start/End: Original strand, 29015331 - 29015363
Alignment:
Q  157 gatgagattcaatttctcatttccgttggatat 189  Q
    |||||||||||||||||||| ||||||||||||    
T  29015331 gatgagattcaatttctcatctccgttggatat 29015363  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 157 - 189
Target Start/End: Original strand, 31393778 - 31393810
Alignment:
Q  157 gatgagattcaatttctcatttccgttggatat 189  Q
    |||||||||||||||||||| ||||||||||||    
T  31393778 gatgagattcaatttctcatctccgttggatat 31393810  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 157 - 189
Target Start/End: Original strand, 42987827 - 42987859
Alignment:
Q  157 gatgagattcaatttctcatttccgttggatat 189  Q
    ||||||||||||||||||||| |||||||||||    
T  42987827 gatgagattcaatttctcattcccgttggatat 42987859  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 157 - 189
Target Start/End: Original strand, 16237675 - 16237707
Alignment:
Q  157 gatgagattcaatttctcatttccgttggatat 189  Q
    |||||||||||||||||||| ||||||||||||    
T  16237675 gatgagattcaatttctcatctccgttggatat 16237707  T

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