View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17321_high_4 (Length: 422)

Name: NF17321_high_4
Description: NF17321
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17321_high_4
NF17321_high_4
[»] chr4 (19 HSPs)
chr4 (250-416)||(4351182-4351346)
chr4 (253-416)||(4126322-4126485)
chr4 (250-416)||(4342893-4343059)
chr4 (21-250)||(3810002-3810231)
chr4 (19-250)||(3986979-3987210)
chr4 (250-417)||(4358361-4358528)
chr4 (115-250)||(3817664-3817799)
chr4 (115-250)||(3919665-3919800)
chr4 (115-250)||(3932889-3933024)
chr4 (21-241)||(4025212-4025432)
chr4 (250-416)||(4333503-4333669)
chr4 (250-416)||(4322987-4323153)
chr4 (126-250)||(3801677-3801801)
chr4 (21-234)||(4002285-4002498)
chr4 (126-250)||(4218734-4218858)
chr4 (112-242)||(4010073-4010203)
chr4 (250-350)||(4330440-4330540)
chr4 (115-238)||(3954345-3954468)
chr4 (168-241)||(3963194-3963267)
[»] scaffold1360 (1 HSPs)
scaffold1360 (168-250)||(1884-1966)
[»] chr6 (14 HSPs)
chr6 (318-416)||(5341713-5341811)
chr6 (318-416)||(5133790-5133888)
chr6 (288-416)||(5075616-5075744)
chr6 (289-416)||(5395033-5395160)
chr6 (287-416)||(5183837-5183966)
chr6 (336-416)||(5148844-5148924)
chr6 (275-416)||(5356501-5356642)
chr6 (342-416)||(5262028-5262102)
chr6 (310-416)||(5691996-5692102)
chr6 (250-395)||(5174817-5174962)
chr6 (287-416)||(5431395-5431524)
chr6 (288-416)||(5445072-5445200)
chr6 (364-416)||(5104757-5104809)
chr6 (364-416)||(5348476-5348528)
[»] chr5 (1 HSPs)
chr5 (115-241)||(13398030-13398156)
[»] chr7 (1 HSPs)
chr7 (276-413)||(36215780-36215917)
[»] chr8 (5 HSPs)
chr8 (163-240)||(7036249-7036326)
chr8 (168-229)||(7069135-7069196)
chr8 (163-240)||(7075636-7075713)
chr8 (170-240)||(7081692-7081762)
chr8 (163-240)||(7030540-7030617)


Alignment Details
Target: chr4 (Bit Score: 132; Significance: 2e-68; HSPs: 19)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 250 - 416
Target Start/End: Original strand, 4351182 - 4351346
Alignment:
Q  250 attagggaggttggggagcaagtttctggacaagtgcatttacaaaaacaacttatagatgatattttcaaagaaaccacaacaaagatacaaaacattg 349  Q
    |||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  4351182 attagggaggttggggagcaagtttctggacaacagcatttacaaaaacaacttatagatgatattttcaaagaaacaacaacaaagatacaaaacattg 4351281  T
Q  350 agtcaggaaaatctatattaaaggaaagactctgtcataaaagagttcttcttgtacttgatgatgt 416  Q
    |||| |||||||||||||||||||||||||||||||||  ||||||||| ||||||||||| |||||    
T  4351282 agtcgggaaaatctatattaaaggaaagactctgtcat--aagagttctccttgtacttgacgatgt 4351346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 253 - 416
Target Start/End: Complemental strand, 4126485 - 4126322
Alignment:
Q  253 agggaggttggggagcaagtttctggacaagtgcatttacaaaaacaacttatagatgatattttcaaagaaaccacaacaaagatacaaaacattgagt 352  Q
    ||||||||| ||||||||||||||||||||||| |||||||| ||||||||||  ||||||||||||||||||||||||| ||||| ||||| ||||| |    
T  4126485 agggaggtttgggagcaagtttctggacaagtgtatttacaagaacaacttatgtatgatattttcaaagaaaccacaaccaagattcaaaatattgaat 4126386  T
Q  353 caggaaaatctatattaaaggaaagactctgtcataaaagagttcttcttgtacttgatgatgt 416  Q
    |||| |||||||||||||||||| |||| ||||||||||||||||||||||||||||| |||||    
T  4126385 cagggaaatctatattaaaggaacgactttgtcataaaagagttcttcttgtacttgacgatgt 4126322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 250 - 416
Target Start/End: Original strand, 4342893 - 4343059
Alignment:
Q  250 attagggaggttggggagcaagtttctggacaagtgcatttacaaaaacaacttatagatgatattttcaaagaaaccacaacaaagatacaaaacattg 349  Q
    |||||||||||| ||||||||||||| ||||||||| |||||||| ||||||||||  ||||||||||||||||||| || || ||||||||||||||||    
T  4342893 attagggaggtttgggagcaagtttcaggacaagtgtatttacaagaacaacttatgcatgatattttcaaagaaacaactaccaagatacaaaacattg 4342992  T
Q  350 agtcaggaaaatctatattaaaggaaagactctgtcataaaagagttcttcttgtacttgatgatgt 416  Q
    | |  | |||| |||||||||||||||| |||||||||||||||||||||||||||||||| |||||    
T  4342993 aattggaaaaacctatattaaaggaaaggctctgtcataaaagagttcttcttgtacttgacgatgt 4343059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 101; E-Value: 6e-50
Query Start/End: Original strand, 21 - 250
Target Start/End: Original strand, 3810002 - 3810231
Alignment:
Q  21 atttggtgtatcaattttcacatcttctgctaatagatcagaaaaaaggttttcctttaaatgtttcattccatgnnnnnnnaactttttacttaccttt 120  Q
    |||||||||||||||||||||||||||||| ||||| | ||||||||| || |  ||||||   | |||||||||       |||| || ||||||||||    
T  3810002 atttggtgtatcaattttcacatcttctgccaatagtttagaaaaaagtttattttttaaagaatccattccatgtcttgttaactcttcacttaccttt 3810101  T
Q  121 tccaaaaaacaacaaccatcatattcagaacgattttggcttaataattcttcggcaatagttgacttgccaataccacccataccccaaattccaataa 220  Q
    ||||| ||||||||||||||||||||||||| | |||||   ||||||||||  |||||||||| |||||||||||||||||||||||||||||| ||||    
T  3810102 tccaagaaacaacaaccatcatattcagaacaaatttggtcaaataattcttttgcaatagttgtcttgccaataccacccataccccaaattccgataa 3810201  T
Q  221 cacggacattttctgactctttctttaaca 250  Q
    || || | |||| |||||||||||||||||    
T  3810202 caggggccttttgtgactctttctttaaca 3810231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 19 - 250
Target Start/End: Original strand, 3986979 - 3987210
Alignment:
Q  19 ctatttggtgtatcaattttcacatcttctgctaatagatcagaaaaaaggttttcctttaaatgtttcattccatgnnnnnnnaactttttacttacct 118  Q
    ||||||||||||||||||||||||||||| || ||||  | || ||||||| |||| ||||||  ||  ||||||||       ||||||| ||| ||||    
T  3986979 ctatttggtgtatcaattttcacatcttcggccaatattttagtaaaaagggtttcttttaaagattctattccatgtaattttaacttttcactcacct 3987078  T
Q  119 tttccaaaaaacaacaaccatcatattcagaacgattttggcttaataattcttcggcaatagttgacttgccaataccacccataccccaaattccaat 218  Q
    || |||||||||||||||||||||||||||| ||||||||| | || | |||||| |||||||||| ||||||||| |||  ||||||||||||||||||    
T  3987079 ttgccaaaaaacaacaaccatcatattcagagcgattttggttaaaaatttcttctgcaatagttgtcttgccaatgccaggcataccccaaattccaat 3987178  T
Q  219 aacacggacattttctgactctttctttaaca 250  Q
     |||||||| |||| |||||||||||||||||    
T  3987179 cacacggaccttttgtgactctttctttaaca 3987210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 250 - 417
Target Start/End: Original strand, 4358361 - 4358528
Alignment:
Q  250 attagggaggttggggagcaagtttctggacaagtgcatttacaaaaacaacttatagatgatattttcaaagaaaccacaacaaagatacaaaacattg 349  Q
    |||||||||||| |||||||||  ||||||||| || |||||||| ||| ||||||  |||||||||| ||||| |||||||| |||||||||| |||||    
T  4358361 attagggaggtttgggagcaagcctctggacaattgtatttacaagaacgacttatgaatgatattttgaaagacaccacaaccaagatacaaagcattg 4358460  T
Q  350 agtcaggaaaatctatattaaaggaaagactctgtcataaaagagttcttcttgtacttgatgatgtc 417  Q
    | ||||||||||||||||||||||||||||| |||||||||||||| ||| |||||||||| ||||||    
T  4358461 aatcaggaaaatctatattaaaggaaagactgtgtcataaaagagtacttattgtacttgacgatgtc 4358528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 115 - 250
Target Start/End: Original strand, 3817664 - 3817799
Alignment:
Q  115 accttttccaaaaaacaacaaccatcatattcagaacgattttggcttaataattcttcggcaatagttgacttgccaataccacccataccccaaattc 214  Q
    ||||||||||| ||||||||||||||||| || |||||||||||||| |||| |||||| |||||||||| |||||||||||| ||||| ||||||||||    
T  3817664 accttttccaagaaacaacaaccatcataatcggaacgattttggctaaatatttcttctgcaatagttgtcttgccaataccgcccatgccccaaattc 3817763  T
Q  215 caataacacggacattttctgactctttctttaaca 250  Q
    ||||||||||||| | ||||||||||||||||||||    
T  3817764 caataacacggacctgttctgactctttctttaaca 3817799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 115 - 250
Target Start/End: Complemental strand, 3919800 - 3919665
Alignment:
Q  115 accttttccaaaaaacaacaaccatcatattcagaacgattttggcttaataattcttcggcaatagttgacttgccaataccacccataccccaaattc 214  Q
    ||||||||||| ||||||||||||||||| || |||||||||||||| |||| |||||| |||||||||| |||||||||||| ||||| ||||||||||    
T  3919800 accttttccaagaaacaacaaccatcataatcggaacgattttggctaaatatttcttctgcaatagttgtcttgccaataccgcccatgccccaaattc 3919701  T
Q  215 caataacacggacattttctgactctttctttaaca 250  Q
    ||||||||||||| | ||||||||||||||||||||    
T  3919700 caataacacggacctgttctgactctttctttaaca 3919665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 115 - 250
Target Start/End: Complemental strand, 3933024 - 3932889
Alignment:
Q  115 accttttccaaaaaacaacaaccatcatattcagaacgattttggcttaataattcttcggcaatagttgacttgccaataccacccataccccaaattc 214  Q
    ||||||||||| ||||||||||||||||| || |||||||||||||| |||| |||||| |||||||||| |||||||||||| ||||| ||||||||||    
T  3933024 accttttccaagaaacaacaaccatcataatcggaacgattttggctaaatatttcttctgcaatagttgtcttgccaataccgcccatgccccaaattc 3932925  T
Q  215 caataacacggacattttctgactctttctttaaca 250  Q
    ||||||||||||| | ||||||||||||||||||||    
T  3932924 caataacacggacctgttctgactctttctttaaca 3932889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 21 - 241
Target Start/End: Original strand, 4025212 - 4025432
Alignment:
Q  21 atttggtgtatcaattttcacatcttctgctaatagatcagaaaaaaggttttcctttaaatgtttcattccatgnnnnnnnaactttttacttaccttt 120  Q
    |||||||| ||| |||||||||||||||||||||||   ||||||||| ||||| || |||  | | ||||||||       || | || ||||||||||    
T  4025212 atttggtgaatcgattttcacatcttctgctaatagtctagaaaaaagtttttctttcaaaaatgttattccatgtcttcctaattcttcacttaccttt 4025311  T
Q  121 tccaaaaaacaacaaccatcatattcagaacgattttggcttaataattcttcggcaatagttgacttgccaataccacccataccccaaattccaataa 220  Q
     |||||||||||||||| ||||||||||| | ||||||  | || | ||||||||||||||||| |||||||||||| ||||||||||||||||||||||    
T  4025312 gccaaaaaacaacaaccttcatattcagagcaattttgtttaaaaatttcttcggcaatagttgtcttgccaatacctcccataccccaaattccaataa 4025411  T
Q  221 cacggacattttctgactctt 241  Q
    |||| || |||||||||||||    
T  4025412 cacgaaccttttctgactctt 4025432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 250 - 416
Target Start/End: Original strand, 4333503 - 4333669
Alignment:
Q  250 attagggaggttggggagcaagtttctggacaagtgcatttacaaaaacaacttatagatgatattttcaaagaaaccacaacaaagatacaaaacattg 349  Q
    |||||||||||| ||||| ||| || ||| |||||| || ||||| ||||||||||  ||||||||||||||||||||||| | |||||||||||||| |    
T  4333503 attagggaggtttgggagaaagattatggtcaagtgaatctacaagaacaacttatgtatgatattttcaaagaaaccacatccaagatacaaaacatag 4333602  T
Q  350 agtcaggaaaatctatattaaaggaaagactctgtcataaaagagttcttcttgtacttgatgatgt 416  Q
    |  ||||||||| |||||||||||| ||||| |||||||||||||||||| |||||||||| |||||    
T  4333603 aagcaggaaaatatatattaaaggacagactatgtcataaaagagttcttattgtacttgacgatgt 4333669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 250 - 416
Target Start/End: Complemental strand, 4323153 - 4322987
Alignment:
Q  250 attagggaggttggggagcaagtttctggacaagtgcatttacaaaaacaacttatagatgatattttcaaagaaaccacaacaaagatacaaaacattg 349  Q
    |||||||||||| ||| | ||| || ||| |||||| || ||||| ||||||||||  |||||||||| |||||||||||||| |||||||| ||| |||    
T  4323153 attagggaggtttgggggaaagattgtggtcaagtgaatctacaagaacaacttatgtatgatatttttaaagaaaccacaaccaagatacagaacgttg 4323054  T
Q  350 agtcaggaaaatctatattaaaggaaagactctgtcataaaagagttcttcttgtacttgatgatgt 416  Q
    | ||||||| |||||||||||| | ||||||||||||||||||||| |||||||||||||| |||||    
T  4323053 aatcaggaatatctatattaaatggaagactctgtcataaaagagtacttcttgtacttgacgatgt 4322987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 126 - 250
Target Start/End: Original strand, 3801677 - 3801801
Alignment:
Q  126 aaaacaacaaccatcatattcagaacgattttggcttaataattcttcggcaatagttgacttgccaataccacccataccccaaattccaataacacgg 225  Q
    |||||||||||||||||||||| | ||||||||| | |||| |||||| |||||||||| |||||||||||| |||||||||||||||||||||||||||    
T  3801677 aaaacaacaaccatcatattcaaagcgattttggttaaatatttcttctgcaatagttgtcttgccaataccgcccataccccaaattccaataacacgg 3801776  T
Q  226 acattttctgactctttctttaaca 250  Q
    || ||| | |||||||| |||||||    
T  3801777 acctttcccgactctttgtttaaca 3801801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 21 - 234
Target Start/End: Original strand, 4002285 - 4002498
Alignment:
Q  21 atttggtgtatcaattttcacatcttctgctaatagatcagaaaaaaggttttcctttaaatgtttcattccatgnnnnnnnaactttttacttaccttt 120  Q
    |||||||| || ||||||||||||||||||||||||   ||||||||| ||||| ||||||  | | ||||||||        | | || ||||||||||    
T  4002285 atttggtgaattaattttcacatcttctgctaatagtgtagaaaaaagcttttcttttaaaaatgttattccatgccttcctgattcttcacttaccttt 4002384  T
Q  121 tccaaaaaacaacaaccatcatattcagaacgattttggcttaataattcttcggcaatagttgacttgccaataccacccataccccaaattccaataa 220  Q
    |||||||||||| |||| ||||||||||| | | || || | || | |||||| |||||||||| |||||||||||| |||||||||||||||||||| |    
T  4002385 tccaaaaaacaaaaaccttcatattcagagcaacttcggttaaaaacttcttcagcaatagttgtcttgccaatacctcccataccccaaattccaatga 4002484  T
Q  221 cacggacattttct 234  Q
    ||||||| ||||||    
T  4002485 cacggaccttttct 4002498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 126 - 250
Target Start/End: Original strand, 4218734 - 4218858
Alignment:
Q  126 aaaacaacaaccatcatattcagaacgattttggcttaataattcttcggcaatagttgacttgccaataccacccataccccaaattccaataacacgg 225  Q
    |||||||||||||||||||||||||| | |||||   ||||||||||  |||||||||| |||||||||||| |||||||||||||||||||||||||||    
T  4218734 aaaacaacaaccatcatattcagaacaaatttggtcaaataattcttttgcaatagttgtcttgccaataccgcccataccccaaattccaataacacgg 4218833  T
Q  226 acattttctgactctttctttaaca 250  Q
    || ||| | |||||||| |||||||    
T  4218834 acctttcccgactctttgtttaaca 4218858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 112 - 242
Target Start/End: Original strand, 4010073 - 4010203
Alignment:
Q  112 cttaccttttccaaaaaacaacaaccatcatattcagaacgattttggcttaataattcttcggcaatagttgacttgccaataccacccataccccaaa 211  Q
    |||||||||||||||||||||||||| ||||||||||| | ||||||| | || | |||| | |||||||||| |||||||||||  ||||| |||||||    
T  4010073 cttaccttttccaaaaaacaacaaccttcatattcagagcaattttggttaaaaatttctcctgcaatagttgtcttgccaatacttcccatgccccaaa 4010172  T
Q  212 ttccaataacacggacattttctgactcttt 242  Q
    ||||||| |||| ||| ||||||||||||||    
T  4010173 ttccaatgacactgaccttttctgactcttt 4010203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 250 - 350
Target Start/End: Original strand, 4330440 - 4330540
Alignment:
Q  250 attagggaggttggggagcaagtttctggacaagtgcatttacaaaaacaacttatagatgatattttcaaagaaaccacaacaaagatacaaaacattg 349  Q
    |||||||||||| |||||||||||||| |||||||  |||||||| ||||||||||  |||||||||||||||||| |||||| ||||||||||||||||    
T  4330440 attagggaggtttgggagcaagtttctagacaagtctatttacaagaacaacttatgtatgatattttcaaagaaatcacaaccaagatacaaaacattg 4330539  T
Q  350 a 350  Q
    |    
T  4330540 a 4330540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 115 - 238
Target Start/End: Complemental strand, 3954468 - 3954345
Alignment:
Q  115 accttttccaaaaaacaacaaccatcatattcagaacgattttggcttaataattcttcggcaatagttgacttgccaataccacccataccccaaattc 214  Q
    |||||| |||||||||||||||| ||||||||||| | | || || |  | | |||||| |||||||||| |||||||||||| ||||||||||||||||    
T  3954468 acctttgccaaaaaacaacaaccttcatattcagagcaacttcggttataaacttcttcagcaatagttgtcttgccaatacctcccataccccaaattc 3954369  T
Q  215 caataacacggacattttctgact 238  Q
    |||| ||||  || ||||||||||    
T  3954368 caatgacacaaaccttttctgact 3954345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 168 - 241
Target Start/End: Complemental strand, 3963267 - 3963194
Alignment:
Q  168 ttcttcggcaatagttgacttgccaataccacccataccccaaattccaataacacggacattttctgactctt 241  Q
    |||||| ||||  |||| ||||||||||||||||||||||||||| |||| |||||| |||| |||||||||||    
T  3963267 ttcttctgcaagggttgtcttgccaataccacccataccccaaatcccaacaacacgaacatcttctgactctt 3963194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1360 (Bit Score: 59; Significance: 7e-25; HSPs: 1)
Name: scaffold1360
Description:

Target: scaffold1360; HSP #1
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 168 - 250
Target Start/End: Complemental strand, 1966 - 1884
Alignment:
Q  168 ttcttcggcaatagttgacttgccaataccacccataccccaaattccaataacacggacattttctgactctttctttaaca 250  Q
    |||||| |||||||||| |||||||||||| ||||| ||||||||||||||||||||||| | ||||||||||||||||||||    
T  1966 ttcttctgcaatagttgtcttgccaataccgcccatgccccaaattccaataacacggacctgttctgactctttctttaaca 1884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 59; Significance: 7e-25; HSPs: 14)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 318 - 416
Target Start/End: Original strand, 5341713 - 5341811
Alignment:
Q  318 caaagaaaccacaacaaagatacaaaacattgagtcaggaaaatctatattaaaggaaagactctgtcataaaagagttcttcttgtacttgatgatgt 416  Q
    ||||||||| |||||||||||||||||||||||||| ||||||  |||||||||||| |||||||||||||| | | | ||||||||||| ||||||||    
T  5341713 caaagaaacaacaacaaagatacaaaacattgagtcgggaaaagttatattaaaggatagactctgtcataagaaaatacttcttgtactagatgatgt 5341811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 318 - 416
Target Start/End: Complemental strand, 5133888 - 5133790
Alignment:
Q  318 caaagaaaccacaacaaagatacaaaacattgagtcaggaaaatctatattaaaggaaagactctgtcataaaagagttcttcttgtacttgatgatgt 416  Q
    ||||||||  ||||| |||||||||||||||||||||||||||  ||| |||||||| |||||||| |||||||||||  |  ||||||||||||||||    
T  5133888 caaagaaatgacaactaagatacaaaacattgagtcaggaaaaaatattttaaaggatagactctggcataaaagagtattaattgtacttgatgatgt 5133790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 288 - 416
Target Start/End: Complemental strand, 5075744 - 5075616
Alignment:
Q  288 tttacaaaaacaacttatagatgatattttcaaagaaaccacaacaaagatacaaaacattgagtcaggaaaatctatattaaaggaaagactctgtcat 387  Q
    ||||||| |||||||| |   |||||||| |||||| || | ||| ||||||| ||  |||||||| |||||| ||||||||| ||| ||||| ||||||    
T  5075744 tttacaagaacaacttctttttgatatttgcaaagatacgaaaactaagatacgaagtattgagtcgggaaaaactatattaatggatagactatgtcat 5075645  T
Q  388 aaaagagttcttcttgtacttgatgatgt 416  Q
    |||||| ||||| ||||||||||||||||    
T  5075644 aaaagaattcttattgtacttgatgatgt 5075616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 289 - 416
Target Start/End: Original strand, 5395033 - 5395160
Alignment:
Q  289 ttacaaaaacaacttatagatgatattttcaaagaaaccacaacaaagatacaaaacattgagtcaggaaaatctatattaaaggaaagactctgtcata 388  Q
    ||||||||||||||| |   |||||||| ||||||||| |  || ||||||||||||||||||||||| |||  |||| ||||||  ||| |||  ||||    
T  5395033 ttacaaaaacaacttctctttgatatttgcaaagaaacgaagactaagatacaaaacattgagtcagggaaaagtatactaaagggtagattcttccata 5395132  T
Q  389 aaagagttcttcttgtacttgatgatgt 416  Q
    ||||||| |||||  |||||||||||||    
T  5395133 aaagagtacttctaatacttgatgatgt 5395160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 287 - 416
Target Start/End: Complemental strand, 5183966 - 5183837
Alignment:
Q  287 atttacaaaaacaacttatagatgatattttcaaagaaaccacaacaaagatacaaaacattgagtcaggaaaatctatattaaaggaaagactctgtca 386  Q
    |||||||||||||| || |   |||||| | ||| ||||| | ||| | |||||||||| |||||||||| |||  |||| ||||||| |||||||  ||    
T  5183966 atttacaaaaacaaattctctttgatatatgcaatgaaacgaaaactaggatacaaaacgttgagtcagggaaaagtatactaaaggatagactcttcca 5183867  T
Q  387 taaaagagttcttcttgtacttgatgatgt 416  Q
    ||||||||| ||||| ||||||||||||||    
T  5183866 taaaagagtacttctggtacttgatgatgt 5183837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 336 - 416
Target Start/End: Complemental strand, 5148924 - 5148844
Alignment:
Q  336 gatacaaaacattgagtcaggaaaatctatattaaaggaaagactctgtcataaaagagttcttcttgtacttgatgatgt 416  Q
    |||||||  ||||||| ||||||||  || ||||||||| |||||||||  ||||||||| ||||||||||||||||||||    
T  5148924 gatacaatgcattgaggcaggaaaacatacattaaaggatagactctgtggtaaaagagtacttcttgtacttgatgatgt 5148844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 275 - 416
Target Start/End: Complemental strand, 5356642 - 5356501
Alignment:
Q  275 ctggacaagtgcatttacaaaaacaacttatagatgatattttcaaagaaaccacaacaaagatacaaaacattgagtcaggaaaatctatattaaagga 374  Q
    |||| |||||| |||||||| |||||||| |   |||||| | |||||| || ||||| || ||||||| ||||||    ||||||   |||||||||||    
T  5356642 ctggccaagtgaatttacaagaacaacttctctctgatatctgcaaagacacgacaaccaaaatacaaagcattgaaaatggaaaaatcatattaaagga 5356543  T
Q  375 aagactctgtcataaaagagttcttcttgtacttgatgatgt 416  Q
     ||||| |||||||||||||| ||  ||||||||||||||||    
T  5356542 tagactttgtcataaaagagtactaattgtacttgatgatgt 5356501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 342 - 416
Target Start/End: Complemental strand, 5262102 - 5262028
Alignment:
Q  342 aaacattgagtcaggaaaatctatattaaaggaaagactctgtcataaaagagttcttcttgtacttgatgatgt 416  Q
    ||||||||||| |||||||   ||||||||||| | ||| || ||||||||||| ||| ||||||||||||||||    
T  5262102 aaacattgagttaggaaaaaacatattaaaggacaaactttgccataaaagagtacttattgtacttgatgatgt 5262028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 310 - 416
Target Start/End: Complemental strand, 5692102 - 5691996
Alignment:
Q  310 gatattttcaaagaaaccacaacaaagatacaaaacattgagtcaggaaaatctatattaaaggaaagactctgtcataaaagagttcttcttgtacttg 409  Q
    ||||||| ||||||||| || || || ||||||||||||||  ||||||||  || ||||| ||| |||||||| |||||||  || ||| ||||||| |    
T  5692102 gatatttgcaaagaaacaacgaccaatatacaaaacattgatgcaggaaaaaatacattaatggatagactctgccataaaaaggtacttattgtactgg 5692003  T
Q  410 atgatgt 416  Q
    |||||||    
T  5692002 atgatgt 5691996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 250 - 395
Target Start/End: Original strand, 5174817 - 5174962
Alignment:
Q  250 attagggaggttggggagcaagtttctggacaagtgcatttacaaaaacaacttatagatgatattttcaaagaaaccacaacaaagatacaaaacattg 349  Q
    |||||||| ||| ||| ||||  | ||||||||||| |||||||| |||||||| ||  |||||| || |||| |||  | || ||||||||||  ||||    
T  5174817 attagggaagtttgggggcaacctgctggacaagtggatttacaacaacaacttctatctgatatctttaaaggaacgtcgaccaagatacaaagtattg 5174916  T
Q  350 agtcaggaaaatctatattaaaggaaagactctgtcataaaagagt 395  Q
    | |||||||||    |||||||||| ||||| |||||||| |||||    
T  5174917 attcaggaaaagtattattaaaggatagactttgtcataagagagt 5174962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 287 - 416
Target Start/End: Original strand, 5431395 - 5431524
Alignment:
Q  287 atttacaaaaacaacttatagatgatattttcaaagaaaccacaacaaagatacaaaacattgagtcaggaaaatctatattaaaggaaagactctgtca 386  Q
    |||||||| |||||||| ||  |||||| |||| || ||| || || ||||||||||  ||||| || || |||  |||||||||||| || || |||||    
T  5431395 atttacaagaacaacttctatctgatatcttcagaggaacgacgaccaagatacaaagtattgattctgggaaaattatattaaaggacaggctttgtca 5431494  T
Q  387 taaaagagttcttcttgtacttgatgatgt 416  Q
    ||||||| | ||| |||||||||| |||||    
T  5431495 taaaagaatacttattgtacttgacgatgt 5431524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 288 - 416
Target Start/End: Original strand, 5445072 - 5445200
Alignment:
Q  288 tttacaaaaacaacttatagatgatattttcaaagaaaccacaacaaagatacaaaacattgagtcaggaaaatctatattaaaggaaagactctgtcat 387  Q
    ||||||| |||||||| ||  |||||| | ||||||||  ||||  ||||||| ||||||||||| |||||||   || ||||| || | |||| | |||    
T  5445072 tttacaagaacaacttttatttgatatctgcaaagaaagaacaatcaagataccaaacattgagttaggaaaaagcatgttaaaagataaactcagccat 5445171  T
Q  388 aaaagagttcttcttgtacttgatgatgt 416  Q
    | |||||| ||| ||||||||||||||||    
T  5445172 acaagagtacttgttgtacttgatgatgt 5445200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 364 - 416
Target Start/End: Complemental strand, 5104809 - 5104757
Alignment:
Q  364 atattaaaggaaagactctgtcataaaagagttcttcttgtacttgatgatgt 416  Q
    ||||||||||| |||||||| |||||||||||  |  ||||||||||||||||    
T  5104809 atattaaaggatagactctgccataaaagagtattgattgtacttgatgatgt 5104757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 364 - 416
Target Start/End: Original strand, 5348476 - 5348528
Alignment:
Q  364 atattaaaggaaagactctgtcataaaagagttcttcttgtacttgatgatgt 416  Q
    ||||||||||| |||||||| ||||||||||| ||  |||| |||||||||||    
T  5348476 atattaaaggatagactctgccataaaagagtactaattgttcttgatgatgt 5348528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 115 - 241
Target Start/End: Original strand, 13398030 - 13398156
Alignment:
Q  115 accttttccaaaaaacaacaaccatcatattcagaacgattttggcttaataattcttcggcaatagttgacttgccaataccacccataccccaaattc 214  Q
    |||||| ||||||||||||| || ||||||||||||| | ||||  | || | ||||||||||||||||| ||| |||||||| |||||||||||||| |    
T  13398030 acctttgccaaaaaacaacatccttcatattcagaacaaatttgattaaaaatttcttcggcaatagttgtctttccaatacctcccataccccaaatac 13398129  T
Q  215 caataacacggacattttctgactctt 241  Q
    |||| || || || |||||||||||||    
T  13398130 caattacgcgaaccttttctgactctt 13398156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 276 - 413
Target Start/End: Complemental strand, 36215917 - 36215780
Alignment:
Q  276 tggacaagtgcatttacaaaaacaacttatagatgatattttcaaagaaaccacaacaaagatacaaaacattgagtcaggaaaatctatattaaaggaa 375  Q
    ||||||||||  ||||||| |||||||| |   |||||||| ||||||||| ||||| || |||||||  |||||| ||||||||  ||||||||| ||     
T  36215917 tggacaagtgtctttacaacaacaacttctctttgatatttgcaaagaaacgacaaccaaaatacaaagtattgaggcaggaaaaattatattaaaagat 36215818  T
Q  376 agactctgtcataaaagagttcttcttgtacttgatga 413  Q
    ||||| |||  ||||||||| |||||||||||||||||    
T  36215817 agactatgtggtaaaagagtacttcttgtacttgatga 36215780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 38; Significance: 0.000000000002; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 163 - 240
Target Start/End: Complemental strand, 7036326 - 7036249
Alignment:
Q  163 aataattcttcggcaatagttgacttgccaataccacccataccccaaattccaataacacggacattttctgactct 240  Q
    |||| |||||| ||||||||||  || |||||||||  ||||||||||||||||| |||||| |||| ||||||||||    
T  7036326 aatacttcttcagcaatagttgttttaccaataccaggcataccccaaattccaagaacacgaacatcttctgactct 7036249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 168 - 229
Target Start/End: Original strand, 7069135 - 7069196
Alignment:
Q  168 ttcttcggcaatagttgacttgccaataccacccataccccaaattccaataacacggacat 229  Q
    |||||| |||||||||| ||| |||||||||| ||||||||||||||||||| |||| ||||    
T  7069135 ttcttctgcaatagttgtctttccaataccactcataccccaaattccaatagcacgaacat 7069196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 163 - 240
Target Start/End: Original strand, 7075636 - 7075713
Alignment:
Q  163 aataattcttcggcaatagttgacttgccaataccacccataccccaaattccaataacacggacattttctgactct 240  Q
    |||| |||||| ||||||||||  || ||||||||   ||||||||||||||||| ||||||||||| ||| ||||||    
T  7075636 aatacttcttcagcaatagttgttttaccaatacctggcataccccaaattccaagaacacggacatcttccgactct 7075713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 170 - 240
Target Start/End: Original strand, 7081692 - 7081762
Alignment:
Q  170 cttcggcaatagttgacttgccaataccacccataccccaaattccaataacacggacattttctgactct 240  Q
    ||||| ||||| ||| ||| |||||||||| ||| ||||||||||||||| |||| |||| || |||||||    
T  7081692 cttcgacaataattgtctttccaataccactcatcccccaaattccaatagcacgaacatcttgtgactct 7081762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 163 - 240
Target Start/End: Complemental strand, 7030617 - 7030540
Alignment:
Q  163 aataattcttcggcaatagttgacttgccaataccacccataccccaaattccaataacacggacattttctgactct 240  Q
    |||| |||||| ||||||||||  || ||||| |||  |||||||||||||||||  ||||| |||| ||||||||||    
T  7030617 aatacttcttcagcaatagttgttttaccaatcccaggcataccccaaattccaaggacacgaacatcttctgactct 7030540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University