View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17321_high_6 (Length: 337)
Name: NF17321_high_6
Description: NF17321
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17321_high_6 |
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Alignment Details
Target: chr5 (Bit Score: 302; Significance: 1e-170; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 12 - 325
Target Start/End: Complemental strand, 4129280 - 4128967
Alignment:
| Q |
12 |
catcatcacgaaaataaagttggaacctcccacttgtgtaattggtctctgaaaatctagaagttatgtttccacctaattcaagagattgattaggcaa |
111 |
Q |
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| T |
4129280 |
catcatcacgaaaataaagttggaacctcccacttgtgtagttggtctctgaaaatctagaagttatgtttccacctaattcaagagattgattaggcaa |
4129181 |
T |
|
| Q |
112 |
aagggtgtcagtgggaaacttgaaactttcccaaacaatagaagaattcttattaacaagaacaaagtttccagtatcatgcatgattccataggaaaca |
211 |
Q |
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| T |
4129180 |
aagggtgtcggtgggaaacttgaaactttcccaaacaatagaagaattcttattaacaagaacaaagtttccagtatcatgcatgattccataggaaaca |
4129081 |
T |
|
| Q |
212 |
gctgtgtttggttgtgctgtccaaatggattcaccttgttgagttgtcaacgtgagtcctccagatgttagctgaacttgtgatcctgtcggtgcttgta |
311 |
Q |
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| T |
4129080 |
gctgtgtttggttgtgctgtccaaatggattcaccttgttgagttgtcaacgtgagtcctcctgatgttagctgaacttgtgatcctgtcggtgcttgta |
4128981 |
T |
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| Q |
312 |
cgaggttgttgttg |
325 |
Q |
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|||||||||||||| |
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| T |
4128980 |
cgaggttgttgttg |
4128967 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 163; E-Value: 5e-87
Query Start/End: Original strand, 12 - 322
Target Start/End: Complemental strand, 4106090 - 4105780
Alignment:
| Q |
12 |
catcatcacgaaaataaagttggaacctcccacttgtgtaattggtctctgaaaatctagaagttatgtttccacctaattcaagagattgattaggcaa |
111 |
Q |
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|||||||| |||||||||||||||||| ||||||||| ||||||||||||| ||||| ||||||| | | ||||||| ||||| |||||||||||||| |
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| T |
4106090 |
catcatcattaaaataaagttggaaccttccacttgtgaaattggtctctgagaatcttgaagttaaggtggcacctaactcaagtgattgattaggcaa |
4105991 |
T |
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| Q |
112 |
aagggtgtcagtgggaaacttgaaactttcccaaacaatagaagaattcttattaacaagaacaaagtttccagtatcatgcatgattccataggaaaca |
211 |
Q |
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|||||| ||||| |||||||| ||||||||||||||||||| ||| || || || |||||||||||||||||| ||||| ||||| |||||||||||||| |
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| T |
4105990 |
aagggtatcagtaggaaacttaaaactttcccaaacaatagcagatttgttgtttacaagaacaaagtttccattatcaagcatggttccataggaaaca |
4105891 |
T |
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| Q |
212 |
gctgtgtttggttgtgctgtccaaatggattcaccttgttgagttgtcaacgtgagtcctccagatgttagctgaacttgtgatcctgtcggtgcttgta |
311 |
Q |
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|||||||||||||||||||||||||||| |||| || |||||||||||||||| || |||||||||||||| ||||||||||| |||||| ||| |
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| T |
4105890 |
atatcgtttggttgtgctgtccaaatggattcattttgtggatttgtcaacgtgagtccacctgatgttagctgaacctgtgatcctgttggtgctagta |
4105791 |
T |
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| Q |
312 |
cgaggttgttg |
322 |
Q |
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||||||||||| |
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| T |
4105790 |
cgaggttgttg |
4105780 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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