View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17321_high_8 (Length: 256)
Name: NF17321_high_8
Description: NF17321
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17321_high_8 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 178; Significance: 4e-96; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 10 - 236
Target Start/End: Original strand, 926236 - 926469
Alignment:
| Q |
10 |
agatgaaaggatcggagtgtgatttggttcaaatcgatgatctctt---ctttggcacatggtttggaggaaataaaagtttcttccataacttgtgttt |
106 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
926236 |
agattaaaggatcggagtgtgatttggttcaaatcgatgatctcttcttctttggcacatggtttggaggaaataaaagtttcttccataacttgtgttt |
926335 |
T |
|
| Q |
107 |
cttttatgagtttatttggatgcattcaacaagtgtttatttttaggctattt----ataaagtcatggagatgnnnnnnnggaagttgcacggaagaaa |
202 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
926336 |
cttttatgagtttatttggatgcattcaacaagtgtttatttttaggctatttataaataaagtcatggagatgaaaaaaaggaagttgcacggaagaaa |
926435 |
T |
|
| Q |
203 |
ggtcgaagttgggatcaagcaagaaagtgaagta |
236 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
|
|
| T |
926436 |
ggtcgaagttgggatcaagcaagaaagtgaagta |
926469 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 10 - 95
Target Start/End: Original strand, 928556 - 928641
Alignment:
| Q |
10 |
agatgaaaggatcggagtgtgatttggttcaaatcgatgatctcttctttggcacatggtttggaggaaataaaagtttcttccat |
95 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||| ||||| ||||||||| |||||||||| || |||||||||||||| ||||| |
|
|
| T |
928556 |
agattaaaggatcggagtgtgatttggttcaaatcaatgatttcttctttgccacatggttttgaagaaataaaagtttcctccat |
928641 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 10 - 98
Target Start/End: Original strand, 939481 - 939569
Alignment:
| Q |
10 |
agatgaaaggatcggagtgtgatttggttcaaatcgatgatctcttctttggcacatggtttggaggaaataaaagtttcttccataac |
98 |
Q |
| |
|
|||||||| | |||||||||||||||||||||||| ||| | | ||| ||| ||| ||||||||| |||||||||||||| |||||||| |
|
|
| T |
939481 |
agatgaaaaggtcggagtgtgatttggttcaaatcaatgctttgttcattgccacttggtttggaagaaataaaagtttcctccataac |
939569 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 10 - 61
Target Start/End: Original strand, 935689 - 935740
Alignment:
| Q |
10 |
agatgaaaggatcggagtgtgatttggttcaaatcgatgatctcttctttgg |
61 |
Q |
| |
|
|||| ||| |||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
935689 |
agattaaaagatcggagtgtgatttggttcaaatcaatgatctcttctttgg |
935740 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 21 - 87
Target Start/End: Original strand, 924212 - 924278
Alignment:
| Q |
21 |
tcggagtgtgatttggttcaaatcgatgatctcttctttggcacatggtttggaggaaataaaagtt |
87 |
Q |
| |
|
|||||||||||||||| | | ||| || ||||||||||||||| ||||||||| |||||| ||||| |
|
|
| T |
924212 |
tcggagtgtgatttgggttagatcaattctctcttctttggcacctggtttggaagaaatagaagtt |
924278 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University