View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17321_low_1 (Length: 780)
Name: NF17321_low_1
Description: NF17321
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17321_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 734; Significance: 0; HSPs: 7)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 734; E-Value: 0
Query Start/End: Original strand, 18 - 771
Target Start/End: Original strand, 50407033 - 50407786
Alignment:
| Q |
18 |
attatcacacaactttattctgctatttattttgatgacccaaaagctttgattttgcttattgcttggcttccagctgcaatttcctttctttttcttc |
117 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50407033 |
attatcacacaactttattctgctatttattttgatgacccaaaagctttgattttgcttattgcttggcttccagctgcaatttcctttctttttcttc |
50407132 |
T |
|
| Q |
118 |
gaacaattcgatacatgaaaccggtcaaacagaacaacgaacttggtgttttttacaagtttttgtatatttcactcggtctagctggttttttaatggt |
217 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50407133 |
gaacaattcgatacatgaaaccggttaaacagaacaacgaacttggtgttttttacaagtttttgtatatttcactcggtctagctggttttttaatggt |
50407232 |
T |
|
| Q |
218 |
tatgatcatattacagaaaaaagtgtcttttaaacagagtgagtatattggaagtgcttcagttgttctaattttgctgttcctacctcttgctgttgtc |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50407233 |
tatgatcatattacagaaaaaagtgtcttttaaacagagtgagtatattggaagtgcttcagttgttctaattttgctgttcctacctcttgctgttgtc |
50407332 |
T |
|
| Q |
318 |
tttgttgaacagaaaaagagtcaaaagcttgcatttgttgatccattttcggttaaaatagtaactgatcaagaagtgaaagagtctgcagcaaaaaatt |
417 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50407333 |
tttgttgaacagaaaaagagtcaaaagcttgcatttgtcgatccattttcagttaaaatagtaactgatcaagaagtgaaagagtctgcagcaaaaaatt |
50407432 |
T |
|
| Q |
418 |
gtgatactaatgcaatggtttgtgttgttgaagtaaaagaaactagatggtggcaaaatatttttagtccacctgaacaaggtgaagattttactatatt |
517 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50407433 |
gtgatactaatgcaatggtttgtgttgttgaagtaaaagaaactagatggtggcaaaatatttttagtccacctgaacaaggtgaagattttactatatt |
50407532 |
T |
|
| Q |
518 |
acaagcccttttcagcatagacatgttattgctattctttgctggcacatgtggtgttggtggaactttaacagcaattgataatttaggtcaaattgga |
617 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50407533 |
acaagcccttttcagcatagacatgttattgctattctttgctggcacatgtggtgttggtggaactttaacagcaattgataatttaggtcaaattgga |
50407632 |
T |
|
| Q |
618 |
acctcactcggatacccaaaaacaagcataagcacatttgtttcattagtgagtatttggaattatctaggaagagttttttctggttttgtttctgaac |
717 |
Q |
| |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50407633 |
acctcacttggatacccaaaaacaagcataagcacatttgtttcattagtgagtatttggaattatctaggaagagttttttctggttttgtttctgaac |
50407732 |
T |
|
| Q |
718 |
atgttttaacaaagtacaaatttccacgaccactcatgttcacattgatgatgt |
771 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
50407733 |
atgttttaacaaagtacaaatttccacgaccactcatgttcacattgattatgt |
50407786 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 76; E-Value: 1e-34
Query Start/End: Original strand, 567 - 742
Target Start/End: Original strand, 50385553 - 50385728
Alignment:
| Q |
567 |
tgtggtgttggtggaactttaacagcaattgataatttaggtcaaattggaacctcactcggatacccaaaaacaagcataagcacatttgtttcattag |
666 |
Q |
| |
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||||||||||| |||||||| ||||||||||||||| | ||||| || ||||| ||||| |||| ||||| | |||||||||||| ||||| || |||| |
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| T |
50385553 |
tgtggtgttggaggaactttgacagcaattgataatcttggtcagataggaacatcactaagatatccaaagaaaagcataagcacttttgtgtctttag |
50385652 |
T |
|
| Q |
667 |
tgagtatttggaattatctaggaagagttttttctggttttgtttctgaacatgttttaacaaagtacaaatttcc |
742 |
Q |
| |
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| || |||||||||||||||||| | ||||| || || ||||||||||||||| || |||||||||||| |||||| |
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| T |
50385653 |
taagcatttggaattatctaggacgtgttttctcaggatttgtttctgaacattttctaacaaagtacagatttcc |
50385728 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 76; E-Value: 1e-34
Query Start/End: Original strand, 567 - 742
Target Start/End: Original strand, 50393972 - 50394147
Alignment:
| Q |
567 |
tgtggtgttggtggaactttaacagcaattgataatttaggtcaaattggaacctcactcggatacccaaaaacaagcataagcacatttgtttcattag |
666 |
Q |
| |
|
||||||||||| |||||||| ||||||||||||||| | ||||| || ||||| ||||| |||| ||||| | |||||||||||| ||||| || |||| |
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| T |
50393972 |
tgtggtgttggaggaactttgacagcaattgataatcttggtcagataggaacatcactaagatatccaaagaaaagcataagcacttttgtgtctttag |
50394071 |
T |
|
| Q |
667 |
tgagtatttggaattatctaggaagagttttttctggttttgtttctgaacatgttttaacaaagtacaaatttcc |
742 |
Q |
| |
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| || |||||||||||||||||| | ||||| || || ||||||||||||||| || |||||||||||| |||||| |
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| T |
50394072 |
taagcatttggaattatctaggacgtgttttctcaggatttgtttctgaacattttctaacaaagtacagatttcc |
50394147 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 66; E-Value: 9e-29
Query Start/End: Original strand, 497 - 742
Target Start/End: Original strand, 50390628 - 50390873
Alignment:
| Q |
497 |
aggtgaagattttactatattacaagcccttttcagcatagacatgttattgctattctttgctggcacatgtggtgttggtggaactttaacagcaatt |
596 |
Q |
| |
|
|||||| |||| ||| ||| | ||||| |||||||||||||||||||| | ||||| | || | | |||||| |||||||| | || |||||| || |
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| T |
50390628 |
aggtgaggattatacgatacttcaagcacttttcagcatagacatgttgatactatttgtggcatgtatttgtggtattggtggatcattgacagcagtt |
50390727 |
T |
|
| Q |
597 |
gataatttaggtcaaattggaacctcactcggatacccaaaaacaagcataagcacatttgtttcattagtgagtatttggaattatctaggaagagttt |
696 |
Q |
| |
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|||||| | ||||| || ||||| ||||| |||| ||||| | |||||||||||| ||||| || ||||| || |||||||||||||||||| | |||| |
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| T |
50390728 |
gataatcttggtcagataggaacatcactaagatatccaaagaaaagcataagcacttttgtgtctttagtaagcatttggaattatctaggacgtgttt |
50390827 |
T |
|
| Q |
697 |
tttctggttttgtttctgaacatgttttaacaaagtacaaatttcc |
742 |
Q |
| |
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| || || ||||||||||||||| || |||||||||||| |||||| |
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| T |
50390828 |
tctcaggatttgtttctgaacattttctaacaaagtacagatttcc |
50390873 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 16 - 139
Target Start/End: Original strand, 50384999 - 50385122
Alignment:
| Q |
16 |
caattatcacacaactttattctgctatttattttgatgacccaaaagctttgattttgcttattgcttggcttccagctgcaatttcctttctttttct |
115 |
Q |
| |
|
|||| |||||||| ||||| ||||||||||||| ||||||| |||| |||||||||||| |||||| ||||||||| ||||| ||||| ||| |||||| |
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|
| T |
50384999 |
caatcatcacacagctttactctgctatttattatgatgacacaaaggctttgattttgtttattggttggcttcctgctgctatttcgtttgcttttct |
50385098 |
T |
|
| Q |
116 |
tcgaacaattcgatacatgaaacc |
139 |
Q |
| |
|
|||||| |||||||| |||||||| |
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|
| T |
50385099 |
tcgaaccattcgatatatgaaacc |
50385122 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 16 - 139
Target Start/End: Original strand, 50393418 - 50393541
Alignment:
| Q |
16 |
caattatcacacaactttattctgctatttattttgatgacccaaaagctttgattttgcttattgcttggcttccagctgcaatttcctttctttttct |
115 |
Q |
| |
|
|||| |||||||| ||||| ||||||||||| | ||||||| |||| |||||||||||| |||| | ||||||||| ||||| ||||| ||| |||||| |
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| T |
50393418 |
caataatcacacagctttactctgctatttactatgatgacacaaaggctttgattttgtttataggttggcttcctgctgctatttcttttgcttttct |
50393517 |
T |
|
| Q |
116 |
tcgaacaattcgatacatgaaacc |
139 |
Q |
| |
|
|||||| ||||| || |||||||| |
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| T |
50393518 |
tcgaaccattcgttatatgaaacc |
50393541 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 21 - 91
Target Start/End: Original strand, 50390149 - 50390219
Alignment:
| Q |
21 |
atcacacaactttattctgctatttattttgatgacccaaaagctttgattttgcttattgcttggcttcc |
91 |
Q |
| |
|
|||||||||||||| ||||||||||||| | ||||| |||| ||||||||||||||||| | ||||||||| |
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|
| T |
50390149 |
atcacacaactttactctgctatttattataatgactcaaaggctttgattttgcttataggttggcttcc |
50390219 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 39; Significance: 0.000000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 16 - 74
Target Start/End: Original strand, 24223937 - 24223995
Alignment:
| Q |
16 |
caattatcacacaactttattctgctatttattttgatgacccaaaagctttgattttg |
74 |
Q |
| |
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|||| |||||||||||||| ||||||||||||| ||||||| |||| |||||||||||| |
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| T |
24223937 |
caatcatcacacaactttactctgctatttattatgatgacacaaaggctttgattttg |
24223995 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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