View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17321_low_12 (Length: 241)
Name: NF17321_low_12
Description: NF17321
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17321_low_12 |
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| [»] chr8 (1 HSPs) |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 153; Significance: 3e-81; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 17 - 241
Target Start/End: Complemental strand, 18034270 - 18034046
Alignment:
| Q |
17 |
catacggctacagatggatgggtggaattataatcagtcatagattacatgacgataaacatgtagaattacagtcgggcacagacaggtggatggaatt |
116 |
Q |
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| T |
18034270 |
catacggctacagatcggtgggtgaaattataatcagtcacagattacacgacgacgaacatgtagaattacagtcgggcataaacaggtgggtggaatt |
18034171 |
T |
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| Q |
117 |
acaattggtcattgactatgcaacgacgcacgagtgaaattacagtcggccacaaacgacacgacaccaccacaacaaaggaacacaaactaaaactata |
216 |
Q |
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| T |
18034170 |
acaatcggtcattgactatacgatgacgcacgagtgaaattacagtcggccacagacgacacgacaccaccacgacaaaggaacacaaactaaaactata |
18034071 |
T |
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| Q |
217 |
aatttataattttcttaaataaatt |
241 |
Q |
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| T |
18034070 |
aatttgtaattttcttcaataaatt |
18034046 |
T |
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Target: chr3 (Bit Score: 83; Significance: 2e-39; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 35 - 241
Target Start/End: Complemental strand, 17504569 - 17504365
Alignment:
| Q |
35 |
tgggtggaattataatcagtcatagattacatgacgataaacatgtagaattacagtcgggcacagacaggtggatggaattacaattggtcattgacta |
134 |
Q |
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| T |
17504569 |
tgggtggaattacaatcaatcacagattacgcgatgacaaacatgtagaattaaa-tcggccacatataggtgggtggaattacaattggtcattgacta |
17504471 |
T |
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| Q |
135 |
tgcaacgacgcacgagtgaaattacagtcggccacaaacgacacgacaccaccacaacaaaggaacacaaactaaaactataaatttataattttcttaa |
234 |
Q |
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| T |
17504470 |
cacgacgacgctcgagtggaattacagtcagccacagatgacacgacacaaccacaacacagaatcaaaaactaaaactat-aagttataattttcttca |
17504372 |
T |
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| Q |
235 |
ataaatt |
241 |
Q |
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| T |
17504371 |
ataaatt |
17504365 |
T |
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