View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17321_low_2 (Length: 615)
Name: NF17321_low_2
Description: NF17321
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17321_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 313; Significance: 1e-176; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 17 - 373
Target Start/End: Complemental strand, 52472188 - 52471832
Alignment:
| Q |
17 |
cataggcaacaatcgacgggtgagactgcctccttctataccttgctgaatggtgttactaagaaggatggggttttaaattggctaacaaaagaagggt |
116 |
Q |
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| T |
52472188 |
cataggcaacaatcgacggatgagactgcctccttctataccttgctgaatggtgttactaagaaggatggggttttaaattggctaacaaaagaagggt |
52472089 |
T |
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| Q |
117 |
gagtttctgtctaaacagcagcaagcagacatgacagttactatacggtgttaaaagagatcacaaaacacgtctcactgtaccaccacactcagcctat |
216 |
Q |
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| T |
52472088 |
gagtttctgtctaaacagcagcaagcagacatgacagttactatacggtgttaaaagagatcacaaaacacgtctcactgtaccaccacactcagcctat |
52471989 |
T |
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| Q |
217 |
attctctcccaatgttgggcttccaagggcctcaatccaacacttggaccatatcctgaaccttcatttctaacacagatccttggctgtcaacgttgtt |
316 |
Q |
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| T |
52471988 |
attctctcccaatgttgggcttccaagggcctcaatccaacacttggaccattgtgttctccttcatttctaacacagatccttggctttcaacattgtt |
52471889 |
T |
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| Q |
317 |
taatttatgggataccaaaaggtaaccattagaagactcttttgcatttacggtcca |
373 |
Q |
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| T |
52471888 |
taatttatgggataccaaaaggtaacctttagaagactcttttgcatttacggtcca |
52471832 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 470 - 552
Target Start/End: Complemental strand, 41485559 - 41485478
Alignment:
| Q |
470 |
aataacgtcttacatgaactagaacttgattaatggcttcaattaccttccgctgttgtacttttactaactttttcagcaat |
552 |
Q |
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| T |
41485559 |
aataaagtcttatatgaactaaaccttaattaatggattcaattacctttccc-gtgttacttttactaactttttcagcaat |
41485478 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 306 - 355
Target Start/End: Original strand, 38793987 - 38794036
Alignment:
| Q |
306 |
tcaacgttgtttaatttatgggataccaaaaggtaaccattagaagactc |
355 |
Q |
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| T |
38793987 |
tcaacattgattgatttatgcgataccaaaaggtaaccattagaggactc |
38794036 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 492 - 568
Target Start/End: Original strand, 12024507 - 12024582
Alignment:
| Q |
492 |
aacttgattaatggcttcaattaccttccgctgttgtacttttactaactttttcagcaatcatcaccaaatcctca |
568 |
Q |
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| T |
12024507 |
aacttgatgaatggtttcaattaccttcctcttgt-tacttttactaactttttcaccaactatcactaaatcctca |
12024582 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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