View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17321_low_3 (Length: 462)
Name: NF17321_low_3
Description: NF17321
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17321_low_3 |
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| [»] chr6 (4 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 293; Significance: 1e-164; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 18 - 462
Target Start/End: Complemental strand, 20590589 - 20590149
Alignment:
| Q |
18 |
tgtttgacatacaaacatactctaaataactcgtcaatttgaatttttgtttcgttgttctgaccctttattttgcaattggcttttcaaataaatttca |
117 |
Q |
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||||||||||||||||||| | ||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| | |
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| T |
20590589 |
tgtttgacatacaaacatattgtaactaactcgtcaatttgaatttttgtttcgttgttctgacccttcattttgcaattggcttttcaaataaatttta |
20590490 |
T |
|
| Q |
118 |
aatattatcannnnnnnnnnnnnacaaaacctataataatgttttttctt-aataattgacatgaagtctgatatagaactcattttgtgattcctatgt |
216 |
Q |
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|||||||||| |||||||||||||||||||||||| || || ||||||||||||||||||||||||||||||||||| |||||| ||| |
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| T |
20590489 |
aatattatcatatttctttttt-acaaaacctataataatgttttttttttaacaattgacatgaagtctgatatagaactcattttgtaattcctgtgt |
20590391 |
T |
|
| Q |
217 |
tatatattggcttgtaattaccaatgaatttgttttcccttgggggattatgactcccactcttcttgatgcgtcgaccattcttcatttgtggacaaga |
316 |
Q |
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||| ||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||| ||||||||||||| |||||||||||||| |
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| T |
20590390 |
tat----tggcttgtaattaccaatgaatttgttttccgttgggggatgatgactcccactcttcttgatgtgtcgaccattcttaatttgtggacaaga |
20590295 |
T |
|
| Q |
317 |
gtttacttttcggagtttcttcgcaagagctctattcctcgtggaataataaccgaacaagttttatgggaattgctagtttactacatgtagcttcaaa |
416 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||| ||||||||||| |
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| T |
20590294 |
gtttacttttcggagtttcttcgcaagagctctattcctcgtggaataataaccaaacaagttttatgggaattgctagtttgctacctgtagcttcaac |
20590195 |
T |
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| Q |
417 |
taaaacttttgacgtgcatgtgcgcttatatattcttcgacatccg |
462 |
Q |
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| T |
20590194 |
taaaacttttgacgtgcctatgcgcttatattttcttcaacatccg |
20590149 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 18 - 462
Target Start/End: Complemental strand, 20621469 - 20621029
Alignment:
| Q |
18 |
tgtttgacatacaaacatactctaaataactcgtcaatttgaatttttgtttcgttgttctgaccctttattttgcaattggcttttcaaataaatttca |
117 |
Q |
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||||||||||||||||||| | ||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20621469 |
tgtttgacatacaaacatattgtaactaactcatcaatttgaatttttgtttcgttgttctgaccctttattttgcaattggcttttcaaataaatttca |
20621370 |
T |
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| Q |
118 |
aatattatcannnnnnnnnnnnnacaaaacctataataatgttttttctt--aataattgacatgaagtctgatatagaactcattttgtgattcctatg |
215 |
Q |
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|||||||| | |||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
20621369 |
aatattataattttctttttt--acaaaacctataataatgttttttatttcaataattgacatgaagtctgatatagaactcattttctgattcctatg |
20621272 |
T |
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| Q |
216 |
ttatatattggcttgtaattaccaatgaatttgttttcccttgggggattatgactcccactcttcttgatgcgtcgaccattcttcatttgtggacaag |
315 |
Q |
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|||| |||||| ||||||||||||||||||||||||||||||| || || ||||||||||||||||||| ||||||||||||| ||||||||||||| |
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| T |
20621271 |
ttat----tggcttttaattaccaatgaatttgttttcccttgggg-atgattactcccactcttcttgatgtgtcgaccattcttaatttgtggacaag |
20621177 |
T |
|
| Q |
316 |
agtttacttttcggagtttcttcgcaagagctctattcctcgtggaataataaccgaacaag-ttttatgggaattgctagtttactacatgtagcttca |
414 |
Q |
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|||||| |||||| ||||||||||||||||||| |||||||||||||||||||||| | ||| ||||||||||||||||||||| |||| |||||||||| |
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| T |
20621176 |
agtttatttttcgtagtttcttcgcaagagctccattcctcgtggaataataaccggaaaagtttttatgggaattgctagtttgctacctgtagcttca |
20621077 |
T |
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| Q |
415 |
aataaaacttttgacgtgcatgtgcgcttatatattcttcgacatccg |
462 |
Q |
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| ||||||||||||| ||| ||||||||||||| || ||| ||||||| |
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| T |
20621076 |
actaaaacttttgacatgcctgtgcgcttatattttattcaacatccg |
20621029 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 183; E-Value: 8e-99
Query Start/End: Original strand, 18 - 329
Target Start/End: Original strand, 12057839 - 12058143
Alignment:
| Q |
18 |
tgtttgacatacaaacatactctaaataactcgtcaatttgaatttttgtttcgttgttctgaccctttattttgcaattggcttttcaaataaatttca |
117 |
Q |
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||||||||||||||||||| | ||| |||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||| |
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| T |
12057839 |
tgtttgacatacaaacatattgtaactaactcatcaatttgaatttttgtttcgttgttctgacccttcattttgcaattggcttatcaaataaatttca |
12057938 |
T |
|
| Q |
118 |
aatattatcannnnnnnnnnnnnacaaaacctataataatgttttttcttaataattgacatgaagtctgatatagaactcattttgtgattcctatgtt |
217 |
Q |
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|||||||| | |||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12057939 |
aatattataattttctttttt--acaaaacctataataatgttttttttcaataattgacatgaagtctgatatagaactcattttgtgattcctatgt- |
12058035 |
T |
|
| Q |
218 |
atatattggcttgtaattaccaatgaatttgttttcccttgggggattatgactcccactcttcttgatgcgtcgaccattcttcatttgtggacaagag |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| | || ||||||||||||||||||| || |||||||||| |||||||||||||| |
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| T |
12058036 |
---tattggcttgtaattaccaatgaatttgttttcccttggggg-tgattactcccactcttcttgatgtgttgaccattcttaatttgtggacaagaa |
12058131 |
T |
|
| Q |
318 |
tttacttttcgg |
329 |
Q |
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|||||||||||| |
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| T |
12058132 |
tttacttttcgg |
12058143 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 18 - 125
Target Start/End: Complemental strand, 20632291 - 20632184
Alignment:
| Q |
18 |
tgtttgacatacaaacatactctaaataactcgtcaatttgaatttttgtttcgttgttctgaccctttattttgcaattggcttttcaaataaatttca |
117 |
Q |
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||||||||||||||| ||| | ||| |||||| |||||||||||||||||||||| |||||||||||| ||||||||||||| ||||||||||||||||| |
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| T |
20632291 |
tgtttgacatacaaatatattgtaactaactcatcaatttgaatttttgtttcgtggttctgacccttcattttgcaattggtttttcaaataaatttca |
20632192 |
T |
|
| Q |
118 |
aatattat |
125 |
Q |
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|||||||| |
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| T |
20632191 |
aatattat |
20632184 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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