View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17321_low_5 (Length: 387)
Name: NF17321_low_5
Description: NF17321
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17321_low_5 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 352; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 352; E-Value: 0
Query Start/End: Original strand, 10 - 369
Target Start/End: Complemental strand, 28530492 - 28530133
Alignment:
| Q |
10 |
aggagcagagaagctattatgacgcgaatgaagatcaggacggtcttcatgaggagtattttgctgataataattataataatgagaggatgatccatgt |
109 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28530492 |
aggaccagagaagctattatgacgcgaatgaagatcaggacggtcttcatgaggagtattttgctgataataattataataatgagaggatgatccatgt |
28530393 |
T |
|
| Q |
110 |
tgtaataagctagcatggtgtgagtgtgaaagagaatgttgaggaggactatgatgactccctggaggaacatggtaaggataagagggtggggctgagg |
209 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28530392 |
tgtaataagctagcatggtgtgagtgtgaaagggaatgttgaggaggactatgatgactccctggaggaacatggtaaggataagagggtggggctgagg |
28530293 |
T |
|
| Q |
210 |
gtactaattgatgaagaggggcaggtggagggtatgcataatcaaatggggcagtataattggatgatgatgatgatggtagtggtggtgatctaggata |
309 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28530292 |
gtactaattgatgaagaggggcaggtggagggtatgcataatcaaatggggcagtataattggatgatgatgatgatggtagtggtggtgatctaggata |
28530193 |
T |
|
| Q |
310 |
ggaggaatagttgaaggaatgtgaagaaatgtaaggatatggataaggaggagcatgatg |
369 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28530192 |
ggaggaatagttgaaggaatgtgaagaaatgtaaggatatggataaggaggagcatgatg |
28530133 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University