View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17321_low_7 (Length: 260)
Name: NF17321_low_7
Description: NF17321
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17321_low_7 |
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Alignment Details
Target: chr3 (Bit Score: 227; Significance: 1e-125; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 19 - 249
Target Start/End: Complemental strand, 47645083 - 47644853
Alignment:
| Q |
19 |
cgtttaggaatttggaaccaacttgagatgggtgacctggtgctgctagaccatatcgaaaatcatagggagctccaaacagattctgaccatctatgta |
118 |
Q |
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| T |
47645083 |
cgtttaggaatttggaaccaacttgagatgggtgacttggtgctgctagaccatatcgaaaatcatagggagctccaaacagattctgaccatctatgta |
47644984 |
T |
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| Q |
119 |
accaagctgttctaatgattctactaagggcgccatgtaccctgtgacaagcctacacaagtaacattactgtattattgtaaggtaccatattttagaa |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47644983 |
accaagctgttctaatgattctactaagggcgccatgtaccctgtgacaagcctacacaagtaacattactgtattattgtaaggtaccatattttagaa |
47644884 |
T |
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| Q |
219 |
ccaacaatatgcatcaaaaccttgtccctat |
249 |
Q |
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||||||||||||||||||||||||||||||| |
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| T |
47644883 |
ccaacaatatgcatcaaaaccttgtccctat |
47644853 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 19 - 69
Target Start/End: Complemental strand, 31641780 - 31641730
Alignment:
| Q |
19 |
cgtttaggaatttggaaccaacttgagatgggtgacctggtgctgctagac |
69 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31641780 |
cgtttaggaatttggaaccaacttgagatgggtgacctggtgctgctagac |
31641730 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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