View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17321_low_9 (Length: 255)
Name: NF17321_low_9
Description: NF17321
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17321_low_9 |
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| [»] chr7 (2 HSPs) |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 125; Significance: 2e-64; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 21 - 149
Target Start/End: Complemental strand, 51385156 - 51385028
Alignment:
| Q |
21 |
atggcattggaaacacttcattttccgcttcttgtttcttcacctctttcttcctaataggcaatattgatgccattggcaacacttaatttccaaagtc |
120 |
Q |
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| T |
51385156 |
atggcattggaaacacttcattttccgcttcttgtttcttcacctctttcttactaataggcaatattgatgccattggcaacacttaatttccaaagtc |
51385057 |
T |
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| Q |
121 |
ctcttcaccttatctatttttaaatcttt |
149 |
Q |
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| T |
51385056 |
ctcttcaccttatctatttttaaatcttt |
51385028 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 163 - 255
Target Start/End: Complemental strand, 13242179 - 13242086
Alignment:
| Q |
163 |
gaaaaaggaaatgattccctgtgctctgatttannnnnnnn-agattttaatctaagagcactaccaaagtttttcaaagaagaaggttatcct |
255 |
Q |
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| T |
13242179 |
gaaaaaggaaatgattccctgtgctctgatttatttttttttagattttaatctaagagcactaccaaagtttttcaaagaagaaggttatcct |
13242086 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 204 - 255
Target Start/End: Complemental strand, 54835547 - 54835496
Alignment:
| Q |
204 |
agattttaatctaagagcactaccaaagtttttcaaagaagaaggttatcct |
255 |
Q |
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| T |
54835547 |
agattttaatctaagagcactaccaaagtttttcaaagaagaaggttatcct |
54835496 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 62; Significance: 7e-27; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 163 - 255
Target Start/End: Complemental strand, 6951339 - 6951246
Alignment:
| Q |
163 |
gaaaaaggaaatgattccctgtgctctgatttannnnnnnn-agattttaatctaagagcactaccaaagtttttcaaagaagaaggttatcct |
255 |
Q |
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| T |
6951339 |
gaaaaaggaaatgattccctgtgctctgatttatttttttttagattttaatctaagagcactaccaaagtttttcaaagaagaaggttatcct |
6951246 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 163 - 255
Target Start/End: Original strand, 12333396 - 12333489
Alignment:
| Q |
163 |
gaaaaaggaaatgattccctgtgctctgatttannnnnnnn-agattttaatctaagagcactaccaaagtttttcaaagaagaaggttatcct |
255 |
Q |
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| T |
12333396 |
gaaaaaggaaatgattccctgtgctctgatttatttttttttagattttaatctaagagcactaccaaagtttttcaaagaagaaggttatcct |
12333489 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 62; Significance: 7e-27; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 163 - 255
Target Start/End: Original strand, 18186750 - 18186843
Alignment:
| Q |
163 |
gaaaaaggaaatgattccctgtgctctgatttannnnnnnn-agattttaatctaagagcactaccaaagtttttcaaagaagaaggttatcct |
255 |
Q |
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| T |
18186750 |
gaaaaaggaaatgattccctgtgctctgatttatttttttttagattttaatctaagagcactaccaaagtttttcaaagaagaaggttatcct |
18186843 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 163 - 195
Target Start/End: Complemental strand, 39507454 - 39507422
Alignment:
| Q |
163 |
gaaaaaggaaatgattccctgtgctctgattta |
195 |
Q |
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| T |
39507454 |
gaaaaaggaaatgattccctgtgctctgattta |
39507422 |
T |
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