View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17322_low_1 (Length: 940)
Name: NF17322_low_1
Description: NF17322
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17322_low_1 |
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Alignment Details
Target: chr8 (Bit Score: 277; Significance: 1e-154; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 277; E-Value: 1e-154
Query Start/End: Original strand, 229 - 545
Target Start/End: Original strand, 37936933 - 37937250
Alignment:
| Q |
229 |
gtaagctatgtattttggttgtatgtttgtgtctgttaaaaaa-taagcataataagttctgataatagctttgggagattcttctagacagaccacgac |
327 |
Q |
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| T |
37936933 |
gtaagctatgtattttggttgtatgtttgtgtctgttaaaaaaataagcataataagttctgataatagctttgggagattcttctagacagaccacgac |
37937032 |
T |
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| Q |
328 |
aattgagnnnnnnntgattatttataattgacagaatacaaaagctgattttatatagtgatgctaactaaactaacaaatcataactaaattgtaaata |
427 |
Q |
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| T |
37937033 |
aattgataaaaaaatgattatttataattgacagaatacaaaagctgattttatatagtgatgctaactaaactaacaaatcataactaaattgtaatta |
37937132 |
T |
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| Q |
428 |
aaagcaaccaacttgcaattatctagaactaacttcaacttattttaagacttcaactatatagaactaacttcaacagttcaactaattccagctagca |
527 |
Q |
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| T |
37937133 |
aaagcaaccaacttgcaattatctagaactaacttcaacttattttaagacttcaactatatagaactaacttcaacagttcaactaattctagctagca |
37937232 |
T |
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| Q |
528 |
cttcaattagagtaaaca |
545 |
Q |
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| T |
37937233 |
cttcaattagagtaaaca |
37937250 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 257; E-Value: 1e-142
Query Start/End: Original strand, 591 - 919
Target Start/End: Original strand, 37937245 - 37937581
Alignment:
| Q |
591 |
taaacatatcaaaatcgcaaatacacccccgttgtctcttttgtgtgtaattttatggactatatcgactaacggaaaaacacatctaatgactaaaatg |
690 |
Q |
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| T |
37937245 |
taaacatatcaaaatcgcaaatacacccccgttgtctcttttgtgtgtaattttatggactatatcgactaacggaaaaacacatctaatgactaaaatg |
37937344 |
T |
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| Q |
691 |
atcaacagaagacatattcgagaaccaaaatgaccgcctatggagacaccactgagtatgtgtcagtaattttaatttggatacact-aaaaaactataa |
789 |
Q |
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| T |
37937345 |
atcaacagaagacatattcgagaaccaaaatgaccgcctatggagacaccaccgagtatatgttagtaattttaatttggatacactaaaaaaactataa |
37937444 |
T |
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| Q |
790 |
tgacaagacatcacacacgttgagagaccaaaatagttgttcagaaaccaattaacgac-gnnnnnnngagta------aaatagaaatgaagacctgta |
882 |
Q |
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| T |
37937445 |
tgacaacacatcacacacgttgagagaccaaaatagttgttcagaaaccaattaacgacggaaaaaaagagtaaaacagaaatagaaatgaagacctgta |
37937544 |
T |
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| Q |
883 |
aaaaggtggatgagatggcaacgaggaacgtagcggc |
919 |
Q |
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| T |
37937545 |
aaaaggtagatgagatggcaacgaggaacgtagcggc |
37937581 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 110; E-Value: 6e-55
Query Start/End: Original strand, 15 - 132
Target Start/End: Original strand, 37936820 - 37936937
Alignment:
| Q |
15 |
cataggcatacaaaaggtagaaagcatattgatacccacgatgcttcatattaagaaaaatattaaattgattaaaaatgattaactacctactaacaac |
114 |
Q |
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| T |
37936820 |
cataggcatacaaaaggcagaaagcatatcgatacccacgatgcttcatattaagaaaaatattaaattgattaaaaatgattaactacctactaacaac |
37936919 |
T |
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| Q |
115 |
cactaactgacttgtaag |
132 |
Q |
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| T |
37936920 |
cactaactgacttgtaag |
37936937 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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