View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17322_low_3 (Length: 285)
Name: NF17322_low_3
Description: NF17322
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17322_low_3 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 242; Significance: 1e-134; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 24 - 285
Target Start/End: Original strand, 25895746 - 25896007
Alignment:
| Q |
24 |
gttaatactcatcctatgcaaacaagaaccaaaactggcattcctttacgtagattaggtcttagtgttttccttatccaaactgaacctaaatttgtta |
123 |
Q |
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| T |
25895746 |
gttaatactcatcctatgcaaacaagaaccaaaactggcattcctttacgtagattaggtcctagtgttttccttatccaaactgaacctaaatttgtta |
25895845 |
T |
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| Q |
124 |
aacatgctcttaaatacccaatgtggttggcagctatgaaaaaggaatattcagctctatagaagaataaaacttggtctcttgtgcctcttccacccaa |
223 |
Q |
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| T |
25895846 |
aacatgctcttaaatacccgatgtggttggcagctatgaaagaggaatattcagctctatagaagaataaaacttggtctcttgtgcctcttccacccaa |
25895945 |
T |
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| Q |
224 |
gagaactgcaattggatgcaaatggatgtttagggtcaaagaaaatgcagatgggaccctaa |
285 |
Q |
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| T |
25895946 |
cagaactgcaattggatgcaaatgggtgtttagggtcaaagaaaatgcagatgggaccctaa |
25896007 |
T |
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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 195 - 269
Target Start/End: Complemental strand, 6870639 - 6870565
Alignment:
| Q |
195 |
acttggtctcttgtgcctcttccacccaagagaactgcaattggatgcaaatggatgtttagggtcaaagaaaat |
269 |
Q |
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| T |
6870639 |
acttggtcacttgtgccccttccacccaacagaaaagctattggttgtaaatgggtgtttaggataaaagaaaat |
6870565 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 195 - 269
Target Start/End: Original strand, 39581529 - 39581603
Alignment:
| Q |
195 |
acttggtctcttgtgcctcttccacccaagagaactgcaattggatgcaaatggatgtttagggtcaaagaaaat |
269 |
Q |
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| T |
39581529 |
acttggtcacttgtgccccttccacccaacagaaaagctattggttgtaaatgggtgtttaggataaaagaaaat |
39581603 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 146 - 223
Target Start/End: Original strand, 26529981 - 26530058
Alignment:
| Q |
146 |
gtggttggcagctatgaaaaaggaatattcagctctatagaagaataaaacttggtctcttgtgcctcttccacccaa |
223 |
Q |
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| T |
26529981 |
gtggttggcagctatgcaagaggaatactctacccttgagaaaaataaaacatggtcccttgtgcctcttccccccaa |
26530058 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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