View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17322_low_4 (Length: 283)
Name: NF17322_low_4
Description: NF17322
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17322_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 199; Significance: 1e-108; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 17 - 268
Target Start/End: Complemental strand, 28987235 - 28986983
Alignment:
| Q |
17 |
aagagaaacagaggaaataaa--taccaattttgcatttagattgttgtgtccgatcgtagccatgagaagagaattggatcgatcggaagtgaagagag |
114 |
Q |
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| T |
28987235 |
aagagaaacagatgaaaaaaaaataccaattttgcattgagattgttgtgtccgatcgtagccatgagaagtgaattggatcgatcggaagtgaaaagag |
28987136 |
T |
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| Q |
115 |
aaaggagaacccaaaaatcgaaaagatttaagctttgaagttagggattaagaagaatttgagattgaaattgatcaaattgaagagacagagaaagtgt |
214 |
Q |
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||| || |||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28987135 |
aaacgaaaacccaaaaagggaaa-gatttaagctttgaagttagggattaagaagaatttgagattgaaattgatcaaattgaagagacagagaaagtgt |
28987037 |
T |
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| Q |
215 |
ctctgtcgaaattctattgcttttcgcttacggtgagtttgagttttctagcgt |
268 |
Q |
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| T |
28987036 |
ctctgtcgaaattctattgcttttcgcttacggtgagtttgagttttctagcgt |
28986983 |
T |
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