View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17323_high_2 (Length: 238)
Name: NF17323_high_2
Description: NF17323
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17323_high_2 |
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Alignment Details
Target: chr4 (Bit Score: 168; Significance: 4e-90; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 32804563 - 32804786
Alignment:
| Q |
1 |
aaagattaatatcaacaaaaattacgaaaaaa-tgaatgtgtatccaactatctaacaagaacgtgtgagattaaagttatgtctaacaccaaccgacac |
99 |
Q |
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||||||||||||||||||||||||| |||||| | ||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||| |
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| T |
32804563 |
aaagattaatatcaacaaaaattacaaaaaaaataaatgtgtatccaactatctaacaaggacgtatgagattaaagttatgtctaacaccaaccgacac |
32804662 |
T |
|
| Q |
100 |
ttgtaattacatacgaacattctaacaccacaaccaaaactgcttccagaacctcccgaaagaactcctaaatatacaacttcgctctcacttctaggaa |
199 |
Q |
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||||||||| ||||||||||||||||||||| |||| || |||||||||||||| |||||||||||||||||||||||||| |||||||||||||||| |
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| T |
32804663 |
ttgtaattagatacgaacattctaacaccaccaccagcacaacttccagaacctccagaaagaactcctaaatatacaacttcactctcacttctaggaa |
32804762 |
T |
|
| Q |
200 |
ccatggctgctacggttcctttct |
223 |
Q |
| |
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|||||||||||||||||||||||| |
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| T |
32804763 |
ccatggctgctacggttcctttct |
32804786 |
T |
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