View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17323_low_1 (Length: 544)

Name: NF17323_low_1
Description: NF17323
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17323_low_1
NF17323_low_1
[»] chr7 (38 HSPs)
chr7 (192-542)||(41078704-41079056)
chr7 (1-163)||(41077557-41077719)
chr7 (417-533)||(40811528-40811644)
chr7 (240-416)||(32254987-32255164)
chr7 (238-411)||(41079784-41079954)
chr7 (278-416)||(43460765-43460903)
chr7 (240-411)||(32256344-32256513)
chr7 (235-411)||(47454330-47454504)
chr7 (239-416)||(13564181-13564358)
chr7 (234-352)||(35664287-35664405)
chr7 (240-416)||(22335977-22336153)
chr7 (327-416)||(40811405-40811494)
chr7 (239-367)||(47456366-47456494)
chr7 (242-408)||(11501180-11501344)
chr7 (240-370)||(22538836-22538966)
chr7 (241-352)||(45455378-45455489)
chr7 (233-372)||(47059099-47059238)
chr7 (417-519)||(45454216-45454316)
chr7 (236-353)||(33096863-33096980)
chr7 (238-353)||(6173455-6173570)
chr7 (239-416)||(11502363-11502541)
chr7 (240-408)||(43459453-43459619)
chr7 (236-352)||(32602927-32603043)
chr7 (233-352)||(30333276-30333395)
chr7 (240-411)||(40812562-40812731)
chr7 (318-402)||(22337329-22337411)
chr7 (238-392)||(30310117-30310270)
chr7 (417-484)||(669231-669298)
chr7 (240-323)||(30334672-30334755)
chr7 (355-417)||(43441460-43441520)
chr7 (278-353)||(45454074-45454149)
chr7 (278-416)||(47060419-47060555)
chr7 (241-416)||(40508377-40508551)
chr7 (444-519)||(9662045-9662120)
chr7 (238-408)||(13562818-13562986)
chr7 (359-416)||(2414863-2414918)
chr7 (278-352)||(4300054-4300128)
chr7 (235-416)||(22537552-22537733)
[»] chr3 (33 HSPs)
chr3 (235-409)||(53622655-53622830)
chr3 (231-417)||(38242457-38242643)
chr3 (238-411)||(40244183-40244353)
chr3 (239-417)||(3208481-3208659)
chr3 (278-416)||(10732071-10732209)
chr3 (237-370)||(18197142-18197275)
chr3 (239-411)||(38240903-38241072)
chr3 (239-395)||(53624326-53624480)
chr3 (417-519)||(36176346-36176445)
chr3 (228-411)||(27837906-27838086)
chr3 (265-370)||(34818109-34818214)
chr3 (278-409)||(10730921-10731050)
chr3 (238-352)||(50810840-50810954)
chr3 (238-352)||(50864910-50865024)
chr3 (239-416)||(53614215-53614392)
chr3 (278-416)||(12107921-12108063)
chr3 (336-416)||(27841652-27841732)
chr3 (278-411)||(35372108-35372238)
chr3 (278-369)||(40745455-40745546)
chr3 (237-352)||(50809416-50809531)
chr3 (237-352)||(50866331-50866446)
chr3 (355-416)||(35371020-35371081)
chr3 (278-350)||(37736089-37736161)
chr3 (278-370)||(53612907-53612999)
chr3 (417-467)||(28909466-28909516)
chr3 (232-409)||(41263628-41263803)
chr3 (278-416)||(53420352-53420490)
chr3 (249-354)||(38247480-38247585)
chr3 (240-416)||(41264595-41264771)
chr3 (278-392)||(53194837-53194950)
chr3 (256-294)||(10340033-10340071)
chr3 (278-372)||(53187595-53187688)
chr3 (278-354)||(53421765-53421841)
[»] scaffold1152 (1 HSPs)
scaffold1152 (239-409)||(2426-2594)
[»] scaffold0077 (2 HSPs)
scaffold0077 (236-416)||(54126-54307)
scaffold0077 (265-409)||(52615-52757)
[»] scaffold0031 (2 HSPs)
scaffold0031 (241-416)||(125174-125350)
scaffold0031 (233-416)||(123960-124141)
[»] chr5 (22 HSPs)
chr5 (256-416)||(27705258-27705418)
chr5 (239-411)||(325134-325304)
chr5 (239-417)||(22047729-22047908)
chr5 (242-416)||(39603853-39604028)
chr5 (239-416)||(30859113-30859291)
chr5 (236-416)||(30910735-30910916)
chr5 (237-354)||(34894144-34894261)
chr5 (265-403)||(39605426-39605562)
chr5 (237-343)||(34898966-34899072)
chr5 (278-409)||(30857836-30857965)
chr5 (255-416)||(8521268-8521427)
chr5 (420-486)||(27705156-27705221)
chr5 (249-354)||(24503191-24503296)
chr5 (240-408)||(30912114-30912280)
chr5 (345-416)||(1010308-1010377)
chr5 (238-416)||(33173903-33174080)
chr5 (328-417)||(15548323-15548413)
chr5 (236-416)||(22308742-22308921)
chr5 (256-354)||(24509040-24509138)
chr5 (278-372)||(22049122-22049216)
chr5 (359-416)||(1102736-1102791)
chr5 (359-416)||(4127196-4127251)
[»] chr1 (32 HSPs)
chr1 (222-416)||(41873914-41874107)
chr1 (239-416)||(45584950-45585128)
chr1 (237-409)||(49802846-49803016)
chr1 (236-416)||(15232746-15232926)
chr1 (265-413)||(15072736-15072883)
chr1 (259-411)||(27814309-27814460)
chr1 (278-416)||(16965068-16965207)
chr1 (230-367)||(46111479-46111616)
chr1 (240-381)||(52628850-52628991)
chr1 (256-406)||(50444651-50444800)
chr1 (235-362)||(15234037-15234164)
chr1 (239-416)||(16963831-16964006)
chr1 (278-416)||(23091387-23091525)
chr1 (278-416)||(35943390-35943527)
chr1 (234-417)||(49801609-49801792)
chr1 (238-353)||(24499660-24499775)
chr1 (417-514)||(44278193-44278288)
chr1 (239-343)||(52627512-52627617)
chr1 (239-417)||(14470853-14471030)
chr1 (237-353)||(15071337-15071453)
chr1 (278-341)||(34351973-34352036)
chr1 (301-411)||(46110341-46110449)
chr1 (378-416)||(15746709-15746747)
chr1 (265-371)||(44276145-44276251)
chr1 (328-416)||(44999405-44999492)
chr1 (265-353)||(44278354-44278442)
chr1 (417-484)||(12665997-12666064)
chr1 (350-416)||(34350219-34350286)
chr1 (255-306)||(51042394-51042445)
chr1 (420-490)||(6049261-6049331)
chr1 (378-416)||(9226158-9226196)
chr1 (378-416)||(13147359-13147397)
[»] chr8 (43 HSPs)
chr8 (234-416)||(32798474-32798656)
chr8 (239-417)||(44076303-44076482)
chr8 (240-417)||(45281130-45281306)
chr8 (417-533)||(45280983-45281097)
chr8 (238-416)||(32695216-32695395)
chr8 (237-411)||(42100055-42100227)
chr8 (278-413)||(42870849-42870985)
chr8 (256-391)||(4810483-4810619)
chr8 (239-416)||(13117575-13117752)
chr8 (417-514)||(26696709-26696805)
chr8 (237-416)||(42098558-42098737)
chr8 (238-411)||(13116326-13116497)
chr8 (278-407)||(32693866-32693993)
chr8 (278-409)||(45279716-45279845)
chr8 (278-408)||(41629744-41629872)
chr8 (238-416)||(42872133-42872309)
chr8 (417-519)||(4810673-4810774)
chr8 (236-352)||(28418800-28418916)
chr8 (278-416)||(8571559-8571697)
chr8 (257-417)||(22551022-22551180)
chr8 (235-353)||(26696525-26696643)
chr8 (345-416)||(42877722-42877791)
chr8 (239-370)||(17339537-17339668)
chr8 (239-352)||(28420180-28420293)
chr8 (240-349)||(32797136-32797245)
chr8 (278-417)||(30786712-30786851)
chr8 (359-416)||(24192606-24192661)
chr8 (417-467)||(34504533-34504583)
chr8 (239-352)||(17338038-17338151)
chr8 (417-484)||(416413-416480)
chr8 (444-519)||(41742297-41742372)
chr8 (278-352)||(6397819-6397893)
chr8 (240-354)||(8570116-8570230)
chr8 (378-416)||(38696443-38696481)
chr8 (241-354)||(211594-211707)
chr8 (241-354)||(240549-240662)
chr8 (241-354)||(725217-725330)
chr8 (241-354)||(793904-794017)
chr8 (275-395)||(26697797-26697915)
chr8 (356-416)||(31845738-31845795)
chr8 (238-291)||(38697073-38697126)
chr8 (276-372)||(6398483-6398579)
chr8 (278-370)||(30787588-30787680)
[»] chr4 (49 HSPs)
chr4 (418-521)||(15449878-15449982)
chr4 (256-416)||(52239891-52240051)
chr4 (239-416)||(2312423-2312601)
chr4 (238-416)||(11968507-11968685)
chr4 (256-416)||(1794425-1794586)
chr4 (256-416)||(6349494-6349655)
chr4 (420-533)||(52240089-52240202)
chr4 (233-411)||(393586-393763)
chr4 (236-413)||(6348149-6348324)
chr4 (238-367)||(1587178-1587307)
chr4 (236-416)||(7707582-7707763)
chr4 (238-366)||(4128989-4129117)
chr4 (243-416)||(27850880-27851047)
chr4 (237-370)||(2310918-2311051)
chr4 (238-343)||(24426335-24426440)
chr4 (278-409)||(40792787-40792914)
chr4 (417-489)||(7053384-7053456)
chr4 (278-416)||(52963605-52963741)
chr4 (240-395)||(1188841-1188995)
chr4 (234-372)||(37884263-37884401)
chr4 (257-411)||(1829768-1829921)
chr4 (256-352)||(37882848-37882944)
chr4 (233-416)||(42810146-42810328)
chr4 (258-395)||(44503643-44503778)
chr4 (238-395)||(10168746-10168903)
chr4 (239-369)||(42871092-42871222)
chr4 (417-519)||(42872137-42872238)
chr4 (240-371)||(390215-390346)
chr4 (239-354)||(1831267-1831382)
chr4 (237-402)||(1588044-1588210)
chr4 (235-349)||(42872308-42872422)
chr4 (237-354)||(10167420-10167537)
chr4 (239-353)||(31968397-31968511)
chr4 (278-411)||(52241105-52241235)
chr4 (328-416)||(15450017-15450105)
chr4 (239-416)||(23201843-23202020)
chr4 (234-370)||(54866619-54866754)
chr4 (240-409)||(23203904-23204071)
chr4 (378-409)||(2311088-2311119)
chr4 (278-395)||(33232663-33232777)
chr4 (278-353)||(50548228-50548303)
chr4 (444-514)||(13533074-13533144)
chr4 (378-416)||(19750237-19750275)
chr4 (378-416)||(19789531-19789569)
chr4 (359-416)||(56085465-56085520)
chr4 (328-408)||(7708740-7708818)
chr4 (265-353)||(31965858-31965946)
chr4 (240-352)||(44501516-44501628)
chr4 (276-352)||(54484347-54484423)
[»] chr2 (26 HSPs)
chr2 (238-416)||(29219381-29219560)
chr2 (238-416)||(29332680-29332859)
chr2 (240-409)||(17460635-17460802)
chr2 (235-416)||(18616947-18617129)
chr2 (235-416)||(6030412-6030593)
chr2 (417-532)||(6030263-6030378)
chr2 (256-416)||(11317310-11317470)
chr2 (239-417)||(43033079-43033255)
chr2 (240-406)||(17459251-17459418)
chr2 (236-369)||(18615510-18615643)
chr2 (278-413)||(11315969-11316102)
chr2 (234-369)||(28562798-28562933)
chr2 (239-412)||(32469145-32469319)
chr2 (240-369)||(29220865-29220994)
chr2 (240-369)||(29334164-29334293)
chr2 (256-416)||(42641803-42641962)
chr2 (256-352)||(43034477-43034573)
chr2 (239-401)||(7437718-7437880)
chr2 (233-411)||(32470524-32470700)
chr2 (278-351)||(28561404-28561477)
chr2 (313-411)||(6028787-6028884)
chr2 (241-352)||(34468957-34469068)
chr2 (328-416)||(11547745-11547834)
chr2 (238-354)||(6030601-6030717)
chr2 (417-484)||(30748686-30748753)
chr2 (420-484)||(30749166-30749230)
[»] scaffold0201 (1 HSPs)
scaffold0201 (239-352)||(21124-21237)
[»] chr6 (20 HSPs)
chr6 (239-413)||(23397301-23397473)
chr6 (238-416)||(5187564-5187742)
chr6 (239-351)||(15730036-15730149)
chr6 (278-417)||(7311666-7311804)
chr6 (235-416)||(23392207-23392388)
chr6 (238-370)||(17839127-17839259)
chr6 (234-370)||(5186560-5186696)
chr6 (238-416)||(29381672-29381850)
chr6 (231-416)||(17837605-17837790)
chr6 (240-370)||(232174-232303)
chr6 (240-411)||(29380189-29380358)
chr6 (239-417)||(18346691-18346869)
chr6 (239-353)||(6452516-6452630)
chr6 (240-352)||(6701378-6701490)
chr6 (239-338)||(34023883-34023982)
chr6 (278-367)||(34024055-34024144)
chr6 (278-416)||(12669759-12669896)
chr6 (278-411)||(7310312-7310443)
chr6 (313-416)||(32506969-32507071)
chr6 (278-354)||(2687266-2687342)
[»] scaffold0118 (2 HSPs)
scaffold0118 (255-416)||(43516-43678)
scaffold0118 (293-341)||(42458-42506)
[»] scaffold0034 (2 HSPs)
scaffold0034 (265-416)||(108536-108687)
scaffold0034 (238-403)||(109702-109865)
[»] scaffold0019 (1 HSPs)
scaffold0019 (234-417)||(63073-63255)
[»] scaffold0472 (1 HSPs)
scaffold0472 (327-372)||(731-776)


Alignment Details
Target: chr7 (Bit Score: 282; Significance: 1e-158; HSPs: 38)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 192 - 542
Target Start/End: Original strand, 41078704 - 41079056
Alignment:
Q  192 tttgacaaaattcgatctttctatcaatagttattctagtatttt--ttaggcttattagatccgttggtccctcaattaatctccatttttcattttgg 289  Q
    |||||||||||||||||||||||| ||||||||||||||||||||  |||||||||||||||||| |||||||||||||||| |||||||||||||||||    
T  41078704 tttgacaaaattcgatctttctataaatagttattctagtattttttttaggcttattagatccgctggtccctcaattaatttccatttttcattttgg 41078803  T
Q  290 tctcacaattgataaaaagtaccttttggtcccttagattttcctccgtttgccgaataaatcccgacggttaactttaacccaaattatgtctatggtg 389  Q
    || |||||||||||||||||| |||||| ||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||| |||||||    
T  41078804 tcccacaattgataaaaagtatcttttgatcctttagattttcctccatttgccgaataaatcccgacggttaactttaacccaaatgatgtatatggtg 41078903  T
Q  390 gaccaatcttaaaagtggtccaccataatcttttttattaaaagatgattgttagatcatgcatgtctagtgtatcttccagtgagtcaacaacacttaa 489  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||    
T  41078904 gaccaatcttaaaaatggtccaccataatcttttttattaaaagatgattgttagatcatgcatgtctattgtatcttccggtgagtcaacaacacttaa 41079003  T
Q  490 ccctttttcccatttcttcatcttcatccctctcatcttcatcacattcttcg 542  Q
    ||||||||||||||||||||||||||||||||||||||||||||  |||||||    
T  41079004 ccctttttcccatttcttcatcttcatccctctcatcttcatcatcttcttcg 41079056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 155; E-Value: 5e-82
Query Start/End: Original strand, 1 - 163
Target Start/End: Original strand, 41077557 - 41077719
Alignment:
Q  1 aaaatatcatttctcatgtagcaatgtcaatgaatggaaatcaaaatggtaatcaactaggatgtaaaaccatcataagaatctgagtggttgaaagcta 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  41077557 aaaatatcatttctcatgtagcaatgtcaatgaatggaaatcaaaatggtaatcaactaagatgtaaaaccatcataagaatctgagtggttgaaagcta 41077656  T
Q  101 catagatagtaatcgttagaaaaagttaaaccattaactttagacttgatcaatagtttaacc 163  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  41077657 catagatagtaatcgttagaaaaaattaaaccattaactttagacttgatcaatagtttaacc 41077719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 417 - 533
Target Start/End: Original strand, 40811528 - 40811644
Alignment:
Q  417 atcttttttattaaaagatgattgttagatcatgcatgtctagtgtatcttccagtgagtcaacaacacttaaccctttttcccatttcttcatcttcat 516  Q
    ||||||||||||||||||| |||||||||||||| ||||||| |||||||||| ||||||||||||||||||||  ||||||||||||||||||||||||    
T  40811528 atcttttttattaaaagataattgttagatcatgaatgtctattgtatcttcctgtgagtcaacaacacttaactttttttcccatttcttcatcttcat 40811627  T
Q  517 ccctctcatcttcatca 533  Q
     ||||||||||| ||||    
T  40811628 tcctctcatctttatca 40811644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 240 - 416
Target Start/End: Original strand, 32254987 - 32255164
Alignment:
Q  240 ggcttattagatccgttggtccctcaattaatctccatttttcattttggtctcacaattgataaaaagtaccttttggtcccttagattttcctccgtt 339  Q
    ||||||||| |||  |||||||||||| |||| || | |||| ||||||||| || |||| |||||| |||| ||||| ||||| |  ||||||||||||    
T  32254987 ggcttattaaatcatttggtccctcaaataatttcaaatttttattttggtcccataattaataaaacgtacattttgatccctcactttttcctccgtt 32255086  T
Q  340 tgccgaataaatcccgacggttaactttaa-cccaaattatgtctatggtggaccaatcttaaaagtggtccaccata 416  Q
    |||| ||||||||||||||||||| ||||| ||||||| |||| ||||||||||||| ||||| ||||||||||||||    
T  32255087 tgccaaataaatcccgacggttaagtttaaccccaaatgatgtttatggtggaccaaccttaagagtggtccaccata 32255164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 238 - 411
Target Start/End: Complemental strand, 41079954 - 41079784
Alignment:
Q  238 taggcttattagatccgttggtccctcaattaatctccatttttcattttggtctcacaattgataaaaagtaccttttggtcccttagattttcctccg 337  Q
    |||| |||||| |||| ||||||||||||||||| ||||||||| ||||||||| ||||||  |||||| |||| |||||||||||||  ||||||||||    
T  41079954 taggtttattatatccattggtccctcaattaatttccattttttattttggtcccacaata-ataaaacgtacgttttggtcccttatcttttcctccg 41079856  T
Q  338 tttgccgaataaatcccgacggttaactttaacccaaattatgtctatggtggaccaatcttaaaagtggtcca 411  Q
    |||||  |||||||||| || |||||||||||| | ||  || ||||||||||| |||  ||||||||||||||    
T  41079855 tttgctaaataaatccctaccgttaactttaactccaa--atatctatggtggaacaacattaaaagtggtcca 41079784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 278 - 416
Target Start/End: Complemental strand, 43460903 - 43460765
Alignment:
Q  278 ttttcattttggtctcacaattgataaaaagtaccttttggtcccttagattttcctccgtttgccgaataaatcccgacggttaactttaacccaaatt 377  Q
    |||||||||||||| ||||||| |||||| |||| |||| |||||| |  ||||||||| |||||| |||||||||  || ||||| |||||| ||||||    
T  43460903 ttttcattttggtcccacaattaataaaacgtacattttagtccctcactttttcctccatttgccaaataaatcctcacagttaagtttaactcaaatt 43460804  T
Q  378 atgtctatggtggaccaatcttaaaagtggtccaccata 416  Q
    ||||||||||||||||||  |||| ||||||||||||||    
T  43460803 atgtctatggtggaccaactttaagagtggtccaccata 43460765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 240 - 411
Target Start/End: Complemental strand, 32256513 - 32256344
Alignment:
Q  240 ggcttattagatccgttggtccctcaattaatctccatttttcattttggtctcacaattgataaaaagtaccttttggtcccttagattttcctccgtt 339  Q
    |||||||| |||||  ||||||||||| |||| || | |||||||||||||| || |||| |||||| |||||||||||||||| |  ||||||||| ||    
T  32256513 ggcttatttgatccaatggtccctcaaataatttcaagttttcattttggtcccataattaataaaatgtaccttttggtccctcactttttcctccatt 32256414  T
Q  340 tgccgaataaatcccgacggttaactttaacccaaattatgtctatggtggaccaatcttaaaagtggtcca 411  Q
    |||| ||||||| || || ||||||||||||   ||  ||||||||||||||||||  ||||||||||||||    
T  32256413 tgccaaataaattccaaccgttaactttaacttcaa--atgtctatggtggaccaacattaaaagtggtcca 32256344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 235 - 411
Target Start/End: Original strand, 47454330 - 47454504
Alignment:
Q  235 ttttaggcttattagatccgttggtccctcaattaatctccatttttcattttggtctcacaattgataaaaagtaccttttggtcccttagattttcct 334  Q
    |||| |||||||| |||||  ||||||||||| |||| || |  ||||||||||||| ||||||| |||||| |||| ||||||||||| |  |||| ||    
T  47454330 tttttggcttatttgatccagtggtccctcaaataatttcaagctttcattttggtcccacaattaataaaacgtacattttggtccctcaagtttttct 47454429  T
Q  335 ccgtttgccgaataaatcccgacggttaactttaacccaaattatgtctatggtggaccaatcttaaaagtggtcca 411  Q
     |||||||| |||||||||||||  ||||||||||| | ||  ||||||||||| |||||| ||||| |||||||||    
T  47454430 tcgtttgccaaataaatcccgactattaactttaactctaa--atgtctatggtagaccaaccttaagagtggtcca 47454504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 239 - 416
Target Start/End: Complemental strand, 13564358 - 13564181
Alignment:
Q  239 aggcttattagatccgttggtccctcaattaatctccatttttcattttggtctcacaattgataaaaagtaccttttggtcccttagattttcctccgt 338  Q
    ||||||||||||||  || |||||| | ||||| ||   |||||||||||||| ||||||| ||||||    | |||| |||||| | ||||||||||||    
T  13564358 aggcttattagatcatttagtcccttatttaatttcttgttttcattttggtcccacaattaataaaactggcgttttagtccctcacattttcctccgt 13564259  T
Q  339 ttgccgaataaatcccgacggttaactttaa-cccaaattatgtctatggtggaccaatcttaaaagtggtccaccata 416  Q
    ||||| ||||||||||||| ||||| ||||| ||||||| |||||||||||||| ||  ||||| ||||||||||||||    
T  13564258 ttgccaaataaatcccgac-gttaagtttaaccccaaataatgtctatggtggatcatccttaagagtggtccaccata 13564181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 234 - 352
Target Start/End: Complemental strand, 35664405 - 35664287
Alignment:
Q  234 tttttaggcttattagatccgttggtccctcaattaatctccatttttcattttggtctcacaattgataaaaagtaccttttggtcccttagattttcc 333  Q
    |||||||||||||||||||| ||| ||||| ||||||| |||||||||||||||| || || || | ||||||| |||||||||||||||||| |||  |    
T  35664405 tttttaggcttattagatccattgatcccttaattaatttccatttttcattttgatcccataagtaataaaaaataccttttggtcccttagttttatc 35664306  T
Q  334 tccgtttgccgaataaatc 352  Q
    |||||||||| || |||||    
T  35664305 tccgtttgccaaaaaaatc 35664287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 240 - 416
Target Start/End: Original strand, 22335977 - 22336153
Alignment:
Q  240 ggcttattagatccgttggtccctcaattaatctccatttttcattttggtctcacaattgataaaaagtaccttttggtcccttagattttcctccgtt 339  Q
    |||||||||||||  ||||||||| | ||||| ||   |||||||||||||| ||||||| |||||||   | |||| |||||| |  |||||||| |||    
T  22335977 ggcttattagatcttttggtcccttatttaatttcgtgttttcattttggtcccacaattaataaaaatggcgttttagtccctcaccttttcctcagtt 22336076  T
Q  340 tgccgaataaatcccgacggttaactttaa-cccaaattatgtctatggtggaccaatcttaaaagtggtccaccata 416  Q
    |||| ||||||||||||  ||||| ||||| ||||||| ||| |||||||||| ||| ||||||||||||||||||||    
T  22336077 tgccaaataaatcccgaatgttaagtttaaccccaaatgatg-ctatggtggatcaaccttaaaagtggtccaccata 22336153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 327 - 416
Target Start/End: Original strand, 40811405 - 40811494
Alignment:
Q  327 attttcctccgtttgccgaataaatcccgacggttaactttaacccaaattatgtctatggtggaccaatcttaaaagtggtccaccata 416  Q
    |||||||||||| | |  ||||||||| |||||||||||||||||||||| |||||||||||||||||| ||||| ||||||||||||||    
T  40811405 attttcctccgtatactaaataaatcctgacggttaactttaacccaaatgatgtctatggtggaccaaccttaagagtggtccaccata 40811494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 239 - 367
Target Start/End: Complemental strand, 47456494 - 47456366
Alignment:
Q  239 aggcttattagatccgttggtccctcaattaatctccatttttcattttggtctcacaattgataaaaagtaccttttggtcccttagattttcctccgt 338  Q
    ||||||||| |||||  ||||||||||| |||| || | |||||||||||||| ||||||| |||||| |||| ||||||||||| |  ||||| || ||    
T  47456494 aggcttatttgatccaatggtccctcaaataatttcaagttttcattttggtcccacaattaataaaacgtactttttggtccctcattttttcttctgt 47456395  T
Q  339 ttgccgaataaatcccgacggttaacttt 367  Q
    ||||| |||||||| |||| |||||||||    
T  47456394 ttgccaaataaatctcgactgttaacttt 47456366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 242 - 408
Target Start/End: Original strand, 11501180 - 11501344
Alignment:
Q  242 cttattagatccgttggtccctcaattaatctccatttttcattttggtctcacaattgataaaaagtaccttttggtcccttagattttcctccgtttg 341  Q
    |||||||||||  ||||||| | ||||||| ||   |||||||||||||| |||| || |||||||   | |||| |||||| |  ||||||||| ||||    
T  11501180 cttattagatcgtttggtcctttaattaatttcatgttttcattttggtcccacagttaataaaaatagcattttagtccctcaccttttcctccatttg 11501279  T
Q  342 ccgaataaatcccgacggttaactttaacccaaattatgtctatggtggaccaatcttaaaagtggt 408  Q
    || ||||||||||||| ||||||||||||   ||  |||||||||||||||||| ||||||||||||    
T  11501280 ccaaataaatcccgactgttaactttaacttcaa--atgtctatggtggaccaaccttaaaagtggt 11501344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 240 - 370
Target Start/End: Complemental strand, 22538966 - 22538836
Alignment:
Q  240 ggcttattagatccgttggtccctcaattaatctccatttttcattttggtctcacaattgataaaaagtaccttttggtcccttagattttcctccgtt 339  Q
    |||||||||||||  ||||||||| | ||||| ||   ||||| |||||||| ||||||| |||||||  || |||| |||||| |  ||||||||||||    
T  22538966 ggcttattagatcgtttggtcccttatttaatttcatgttttctttttggtcccacaattaataaaaatgacgttttagtccctcatcttttcctccgtt 22538867  T
Q  340 tgccgaataaatcccgacggttaactttaac 370  Q
    |||| |||||||| |||||||||||||||||    
T  22538866 tgccaaataaatctcgacggttaactttaac 22538836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 241 - 352
Target Start/End: Complemental strand, 45455489 - 45455378
Alignment:
Q  241 gcttattagatccgttggtccctcaattaatctccatttttcattttggtctcacaattgataaaaagtaccttttggtcccttagattttcctccgttt 340  Q
    ||||||| |||||| |||||||| ||||||| || | |||||||||||||| ||||||| |||||| |||| ||||| ||||| |  |||| ||||||||    
T  45455489 gcttatttgatccgatggtcccttaattaatttcaaattttcattttggtcccacaattaataaaacgtacattttgatccctcacttttttctccgttt 45455390  T
Q  341 gccgaataaatc 352  Q
    ||| ||||||||    
T  45455389 gccaaataaatc 45455378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 233 - 372
Target Start/End: Original strand, 47059099 - 47059238
Alignment:
Q  233 ttttttaggcttattagatccgttggtccctcaattaatctccatttttcattttggtctcacaattgataaaaagtaccttttggtcccttagattttc 332  Q
    |||||| |||||||||||| |  |||||||  ||||||| |  | ||||||||||||||  |||||| |||||| |||| ||||| ||||| |  |||||    
T  47059099 ttttttgggcttattagattcaatggtcccctaattaattttaagttttcattttggtcctacaattaataaaatgtacgttttgatccctcactttttc 47059198  T
Q  333 ctccgtttgccgaataaatcccgacggttaactttaaccc 372  Q
    ||||||||||| ||||||||| ||| ||||| ||||||||    
T  47059199 ctccgtttgccaaataaatcctgaccgttaagtttaaccc 47059238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 417 - 519
Target Start/End: Original strand, 45454216 - 45454316
Alignment:
Q  417 atcttttttattaaaagatgattgttagatcatgcatgtctagtgtatcttccagtgagtcaacaacacttaaccctttttcccatttcttcatcttcat 516  Q
    |||||||| ||||||||| ||| ||||||| |||||| |||| ||||||||||| |||||||||||||||| |   |||||||||||||||||||||| |    
T  45454216 atctttttaattaaaagaggatcgttagattatgcatatctactgtatcttcca-tgagtcaacaacacttga-tttttttcccatttcttcatcttctt 45454313  T
Q  517 ccc 519  Q
    |||    
T  45454314 ccc 45454316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 236 - 353
Target Start/End: Original strand, 33096863 - 33096980
Alignment:
Q  236 tttaggcttattagatccgttggtccctcaattaatctccatttttcattttggtctcacaattgataaaaagtaccttttggtcccttagattttcctc 335  Q
    |||||||||||| |||||  ||||||||||| |||| || | || ||||||| | | ||||||| ||||||  ||||||||||||||| |  ||||||||    
T  33096863 tttaggcttatttgatccaatggtccctcaaataatttcaagttctcattttaggcccacaattaataaaacttaccttttggtccctcactttttcctc 33096962  T
Q  336 cgtttgccgaataaatcc 353  Q
    |||||||| |||||||||    
T  33096963 cgtttgccaaataaatcc 33096980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 238 - 353
Target Start/End: Complemental strand, 6173570 - 6173455
Alignment:
Q  238 taggcttattagatccgttggtccctcaattaatctccatttttcattttggtctcacaattgataaaaagtaccttttggtcccttagattttcctccg 337  Q
    |||||||||| |||||  ||||||||||| |||| || | |||||||||||  | || |||| |||||| |||| ||||||||||| |  ||||||||||    
T  6173570 taggcttatttgatccaatggtccctcaaataatttcaagttttcattttgtacccataattaataaaacgtacattttggtccctcactttttcctccg 6173471  T
Q  338 tttgccgaataaatcc 353  Q
    |||||| |||||||||    
T  6173470 tttgccaaataaatcc 6173455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 239 - 416
Target Start/End: Complemental strand, 11502541 - 11502363
Alignment:
Q  239 aggcttattagatccgttggtccctcaattaatctccatttttcattttggtctcacaattgataaaaagtaccttttggtcccttagattttcctccgt 338  Q
    ||||||||||||||  ||||||| | || |||| ||   ||||||||||| || |||| || ||||||| | |   || |||||| |  |||| ||| ||    
T  11502541 aggcttattagatcgtttggtcctttaactaatttcatgttttcattttgatcccacatttaataaaaattgcgaattagtccctcaacttttgctctgt 11502442  T
Q  339 ttgccgaataaatcccgacggttaactttaacc-caaattatgtctatggtggaccaatcttaaaagtggtccaccata 416  Q
    ||||| |||||||||| || ||||| ||||||| ||||| ||||||||||| |||||| ||||| ||||||||||||||    
T  11502441 ttgccaaataaatcccaacagttaagtttaacctcaaatgatgtctatggtagaccaaccttaagagtggtccaccata 11502363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 240 - 408
Target Start/End: Original strand, 43459453 - 43459619
Alignment:
Q  240 ggcttattagatccgttggtccctcaattaatctccatttttcattttggtctcacaattgataaaaagtaccttttggtcccttagattttcctccgtt 339  Q
    |||||||| ||||| || |||||  || |||| || | |||||||||||||| ||||||| |||||| || | |||  |||||| |  ||||||||||||    
T  43459453 ggcttatttgatccattagtcccctaaataatttcaagttttcattttggtcccacaattaataaaacgtgcgtttaagtccctcatgttttcctccgtt 43459552  T
Q  340 tgccgaataaatcccgacggttaactttaacccaaattatgtctatggtggaccaatcttaaaagtggt 408  Q
    |||| |||||||| || | ||||| |||||| | ||  |||||||||||||| ||| ||||||| ||||    
T  43459553 tgccaaataaatctcggctgttaagtttaactccaa--atgtctatggtggatcaaccttaaaaatggt 43459619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 236 - 352
Target Start/End: Original strand, 32602927 - 32603043
Alignment:
Q  236 tttaggcttattagatccgttggtccctcaattaatctccatttttcattttggtctcacaattgataaaaagtaccttttggtcccttagattttcctc 335  Q
    |||||||||||| ||||| ||||||| |||| |||| || | |||| ||||||||| || |||| |||||| |||| |||| |||||| |  |||| |||    
T  32602927 tttaggcttatttgatccattggtccttcaaataatttcaagtttttattttggtcccataattaataaaacgtacgttttagtccctcactttttactc 32603026  T
Q  336 cgtttgccgaataaatc 352  Q
    |||||||| ||||||||    
T  32603027 cgtttgccaaataaatc 32603043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 233 - 352
Target Start/End: Original strand, 30333276 - 30333395
Alignment:
Q  233 ttttttaggcttattagatccgttggtccctcaattaatctccatttttcattttggtctcacaattgataaaaagtaccttttggtcccttagattttc 332  Q
    ||||||| ||||| ||||| | ||||||||  || |||| || | |||||||||||||| ||||||| |||||| ||| |||||||||||| |  ||||     
T  30333276 ttttttaagcttaatagattcattggtcccctaaataatttcaagttttcattttggtcccacaattaataaaacgtatcttttggtccctcattttttt 30333375  T
Q  333 ctccgtttgccgaataaatc 352  Q
    ||||||||| | ||||||||    
T  30333376 ctccgtttgtcaaataaatc 30333395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 240 - 411
Target Start/End: Complemental strand, 40812731 - 40812562
Alignment:
Q  240 ggcttattagatccgttggtccctcaattaatctccatttttcattttggtctcacaattgataaaaagtaccttttggtcccttagattttcctccgtt 339  Q
    |||||||||||||  ||| ||||| | ||||| ||   |||||||||||||  || |||| |||||| |||| ||||| ||||| | ||||||||| |||    
T  40812731 ggcttattagatcgtttgatcccttatttaatttcatgttttcattttggttccataattaataaaacgtacgttttgctccctcatattttcctctgtt 40812632  T
Q  340 tgccgaataaatcccgacggttaactttaac-ccaaattatgtctatggtggaccaatcttaaaagtggtcca 411  Q
    || | |||| |||||||| ||| |||||||| |||||| |   | |||||||||||| |||||||||| ||||    
T  40812631 tgtcaaatatatcccgactgtttactttaactccaaataa---ccatggtggaccaaccttaaaagtgatcca 40812562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 318 - 402
Target Start/End: Complemental strand, 22337411 - 22337329
Alignment:
Q  318 gtcccttagattttcctccgtttgccgaataaatcccgacggttaactttaacccaaattatgtctatggtggaccaatcttaaa 402  Q
    |||||||| ||||||||||||||||| ||||||||| ||| ||||| ||||||   ||  |||||||||||||||||| ||||||    
T  22337411 gtcccttacattttcctccgtttgccaaataaatcctgaccgttaaatttaacttcaa--atgtctatggtggaccaaccttaaa 22337329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 238 - 392
Target Start/End: Original strand, 30310117 - 30310270
Alignment:
Q  238 taggcttattagatccgttggtccctcaattaatctccatttttcattttggtctcacaattgataaaaagtaccttttggtcccttagattttcctccg 337  Q
    |||||||||| |||||  | |||||| || |||| || | |||||||||| ||| ||||||| |||||| |||| |||  || ||| |  ||||||||||    
T  30310117 taggcttatttgatccaatagtcccttaaataatttcaagttttcatttttgtcccacaattaataaaacgtacatttgagttcctcattttttcctccg 30310216  T
Q  338 tttgccgaataaatccc-gacggttaactttaacccaaattatgtctatggtggac 392  Q
    |||||| |||||||||| ||| |||||  ||||||| ||  |||||||||||||||    
T  30310217 tttgccaaataaatcccagactgttaaagttaaccccaa--atgtctatggtggac 30310270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 417 - 484
Target Start/End: Complemental strand, 669298 - 669231
Alignment:
Q  417 atcttttttattaaaagatgattgttagatcatgcatgtctagtgtatcttccagtgagtcaacaaca 484  Q
    |||||||||| |||||||| | ||||||||||||||||| || |||||||| || ||| |||||||||    
T  669298 atcttttttaataaaagataactgttagatcatgcatgtttattgtatcttacaatgaatcaacaaca 669231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 240 - 323
Target Start/End: Complemental strand, 30334755 - 30334672
Alignment:
Q  240 ggcttattagatccgttggtccctcaattaatctccatttttcattttggtctcacaattgataaaaagtaccttttggtccct 323  Q
    |||||| ||||||| ||||||||  || |||| || | |||||||||| ||| ||||||| |||||| ||||||||||||||||    
T  30334755 ggcttaatagatccattggtcccctaactaatttcaagttttcattttagtcccacaattaataaaacgtaccttttggtccct 30334672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 355 - 417
Target Start/End: Original strand, 43441460 - 43441520
Alignment:
Q  355 gacggttaactttaacccaaattatgtctatggtggaccaatcttaaaagtggtccaccataa 417  Q
    |||||||||||||||||| ||  |||||||||||| ||||| ||||| |||||||||||||||    
T  43441460 gacggttaactttaaccctaa--atgtctatggtgtaccaaccttaagagtggtccaccataa 43441520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 278 - 353
Target Start/End: Original strand, 45454074 - 45454149
Alignment:
Q  278 ttttcattttggtctcacaattgataaaaagtaccttttggtcccttagattttcctccgtttgccgaataaatcc 353  Q
    ||||||||||||||||| |||| ||||||  ||| |||| |||||| |  |||||||||||||||| |||||||||    
T  45454074 ttttcattttggtctcataattaataaaacatacgttttagtccctcactttttcctccgtttgccaaataaatcc 45454149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 278 - 416
Target Start/End: Complemental strand, 47060555 - 47060419
Alignment:
Q  278 ttttcattttggtctcacaattgataaaaagtaccttttggtcccttagattttcctccgtttgccgaataaatcccgacggttaactttaacccaaatt 377  Q
    ||||||||||||||  | |||| |||||| |||| ||||||||||| |   |||  |||||||||| ||||||||| ||| ||||| |||||| | ||      
T  47060555 ttttcattttggtcctataattaataaaacgtacgttttggtccctcacccttttttccgtttgccaaataaatccggactgttaagtttaacaccaa-- 47060458  T
Q  378 atgtctatggtggaccaatcttaaaagtggtccaccata 416  Q
    |||| ||||||||||||| ||||| | | ||||||||||    
T  47060457 atgtatatggtggaccaaccttaagaatagtccaccata 47060419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 241 - 416
Target Start/End: Original strand, 40508377 - 40508551
Alignment:
Q  241 gcttattagatccgttggtccctcaattaatctccatttttcattttggtctcacaattgataaaaagtaccttttggtcccttagattttcctccgttt 340  Q
    ||||||| |||||  |||||||  || |||| || | |||||||||| ||| ||||||| |||||| |||| |||  |||||| |  ||||||||||||     
T  40508377 gcttatttgatccaatggtcccctaaataatttcaagttttcatttttgtcccacaattaataaaacgtacgtttaagtccctcactttttcctccgtta 40508476  T
Q  341 gccgaataaatcccgacg-gttaactttaacccaaattatgtctatggtggaccaatcttaaaagtggtccaccata 416  Q
    ||| |||||||||    | ||||| ||||| || ||  |||||||||||||| ||||||||| ||| ||||||||||    
T  40508477 gccaaataaatccttcggtgttaagtttaatcccaa--atgtctatggtggatcaatcttaagagttgtccaccata 40508551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 444 - 519
Target Start/End: Complemental strand, 9662120 - 9662045
Alignment:
Q  444 gatcatgcatgtctagtgtatcttccagtgagtcaacaacacttaaccctttttcccatttcttcatcttcatccc 519  Q
    ||||||||| ||||| ||||||||||| ||| ||| ||| ||||||   ||||| |||||||||||||||| ||||    
T  9662120 gatcatgcaagtctattgtatcttccaatgaatcatcaaaacttaatttttttttccatttcttcatcttcttccc 9662045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #35
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 238 - 408
Target Start/End: Original strand, 13562818 - 13562986
Alignment:
Q  238 taggcttattagatccgttggtccctcaattaatctccatttttcattttggtctcacaattgataaaaagtaccttttggtcccttagattttcctccg 337  Q
    |||||||||||||||  || |||||| | ||||| ||   |||| ||||||||| ||||| | |||||||   | |||| |||||| | ||||| ||| |    
T  13562818 taggcttattagatcgtttagtcccttatttaatttcttgtttttattttggtcccacaagtaataaaaatggcgttttagtccctcacatttttctctg 13562917  T
Q  338 tttgccgaataaatcccgacggttaactttaacccaaattatgtctatggtggaccaatcttaaaagtggt 408  Q
    ||| || ||||||||||||  ||||||||||||   ||  ||||||||  |||||||| ||||||||||||    
T  13562918 tttaccaaataaatcccgattgttaactttaacttcaa--atgtctataatggaccaaccttaaaagtggt 13562986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #36
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 359 - 416
Target Start/End: Original strand, 2414863 - 2414918
Alignment:
Q  359 gttaactttaacccaaattatgtctatggtggaccaatcttaaaagtggtccaccata 416  Q
    |||||||||||||| ||  ||||||||  |||||||| ||||||||||||||||||||    
T  2414863 gttaactttaaccccaa--atgtctataatggaccaaccttaaaagtggtccaccata 2414918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #37
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 278 - 352
Target Start/End: Complemental strand, 4300128 - 4300054
Alignment:
Q  278 ttttcattttggtctcacaattgataaaaagtaccttttggtcccttagattttcctccgtttgccgaataaatc 352  Q
    |||||||||||||| ||||||| |||||| |||| |||  |||||| |  |||||||| ||||||| ||||||||    
T  4300128 ttttcattttggtcccacaattaataaaacgtacgtttaagtccctcactttttcctctgtttgccaaataaatc 4300054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #38
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 235 - 416
Target Start/End: Original strand, 22537552 - 22537733
Alignment:
Q  235 ttttaggcttattagatccgttggtccctcaattaatctccatttttcattttggtctcacaattgataaaaagtaccttttggtcccttagattttcct 334  Q
    ||||||||||||||||||  ||| ||||| | ||||| |    |||||||||||||| |||||||  ||||||  || ||||| ||||| |  |||  ||    
T  22537552 ttttaggcttattagatcgtttgctcccttatttaattttatattttcattttggtcccacaattactaaaaatgacattttgatccctcacgtttgtct 22537651  T
Q  335 ccgtttgccgaataaatcccgacggttaactttaacc-caaattatgtctatggtggaccaatcttaaaagtggtccaccata 416  Q
    | ||||||| ||||||| || || ||||| ||||||| ||||| |||| || |||| ||||| ||||| |||| |||||||||    
T  22537652 ctgtttgccaaataaat-ccaactgttaattttaacctcaaatgatgtttacggtgaaccaaccttaatagtgatccaccata 22537733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 92; Significance: 2e-44; HSPs: 33)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 235 - 409
Target Start/End: Original strand, 53622655 - 53622830
Alignment:
Q  235 ttttaggcttattagatccgttggtccctcaattaatctccatttttcattttggtctcacaattgataaaaagtaccttttggtcccttagattttcct 334  Q
    ||||||||||||||||||| || ||||||| |||||| | |||| |||||||||||| ||||||| ||||||| ||  ||||| ||||||||||||||||    
T  53622655 ttttaggcttattagatccattcgtccctcgattaattttcattattcattttggtcgcacaattaataaaaaatatattttgatcccttagattttcct 53622754  T
Q  335 ccgtttgccgaataaatcccgacggttaactttaa-cccaaattatgtctatggtggaccaatcttaaaagtggtc 409  Q
    ||||||||| | |||||||| |||||||| ||||| ||||||| |||||||||||||||||| ||||| |||||||    
T  53622755 ccgtttgccaactaaatcccaacggttaagtttaaccccaaatgatgtctatggtggaccaaccttaagagtggtc 53622830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 231 - 417
Target Start/End: Complemental strand, 38242643 - 38242457
Alignment:
Q  231 tattttttaggcttattagatccgttggtccctcaattaatctccatttttcattttggtctcacaattgataaaaagtaccttttggtcccttagattt 330  Q
    |||| |||||||||||| ||| |   |||||||||| |||| || | ||||||||||| || ||||||| |||||| |||||||||||||||| |  |||    
T  38242643 tattatttaggcttatttgattcaaaggtccctcaaataatttcaagttttcattttgatcccacaattaataaaacgtaccttttggtccctcactttt 38242544  T
Q  331 tcctccgtttgccgaataaatcccgacggttaactttaacccaaattatgtctatggtggaccaatcttaaaagtggtccaccataa 417  Q
    |  || ||||||| |||||||||  || ||||| |||||| ||||| |||||||||||||||||| ||||| |||||||||||||||    
T  38242543 ttatctgtttgccaaataaatcctcacagttaagtttaactcaaatgatgtctatggtggaccaaccttaagagtggtccaccataa 38242457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 238 - 411
Target Start/End: Original strand, 40244183 - 40244353
Alignment:
Q  238 taggcttattagatccgttggtccctcaattaatctccatttttcattttggtctcacaattgataaaaagtaccttttggtcccttagattttcctccg 337  Q
    |||||||||| ||||| ||||||||| || |||| || | |||||||||||||||||||||| |||||| |||| ||||||||||| | |||||||||||    
T  40244183 taggcttatttgatccattggtcccttaaataatttcaagttttcattttggtctcacaattaataaaacgtacattttggtccctcaaattttcctccg 40244282  T
Q  338 tttgccgaataaatcccgacggttaactttaacccaaattatgtctatggtggaccaatcttaaaagtggtcca 411  Q
    |||||| ||| |||   ||| ||||||||||||   ||   ||||||||||||||||| |||||||||||||||    
T  40244283 tttgccaaat-aattttgacagttaactttaacttcaa--gtgtctatggtggaccaaacttaaaagtggtcca 40244353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 239 - 417
Target Start/End: Original strand, 3208481 - 3208659
Alignment:
Q  239 aggcttattagatccgttggtccctcaattaatctccatttttcattttggtctcacaattgataaaaagtaccttttggtcccttagattttcctccgt 338  Q
    |||||||||  |||| |||||||   ||||||| ||||||||||||||||||| || |||| |||||| |||| ||||| |||||||  |||||||||||    
T  3208481 aggcttatttaatccattggtcctctaattaatttccatttttcattttggtcccataattaataaaacgtacgttttgatcccttattttttcctccgt 3208580  T
Q  339 ttgccgaataaatcccgacggttaactttaa-cccaaattatgtctatggtggaccaatcttaaaagtggtccaccataa 417  Q
    ||| | |||||||||  || ||||| ||||| ||||||| || | ||||||||||||| ||||| |||||||||||||||    
T  3208581 ttgtcaaataaatccttaccgttaagtttaaccccaaatgatat-tatggtggaccaaccttaagagtggtccaccataa 3208659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 278 - 416
Target Start/End: Complemental strand, 10732209 - 10732071
Alignment:
Q  278 ttttcattttggtctcacaattgataaaaagtaccttttggtcccttagattttcctccgtttgccgaataaatcccgacggttaactttaacccaaatt 377  Q
    |||||||||||||| || |||| |||||||   | |||| |||||| | |||||||||||||| || ||||||| ||||||||||| ||||||||||||     
T  10732209 ttttcattttggtcccataattaataaaaatggcgttttagtccctcacattttcctccgtttaccaaataaattccgacggttaagtttaacccaaatg 10732110  T
Q  378 atgtctatggtggaccaatcttaaaagtggtccaccata 416  Q
    |||||||||||||||||| ||| | || |||||||||||    
T  10732109 atgtctatggtggaccaacctttagagcggtccaccata 10732071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 237 - 370
Target Start/End: Original strand, 18197142 - 18197275
Alignment:
Q  237 ttaggcttattagatccgttggtccctcaattaatctccatttttcattttggtctcacaattgataaaaagtaccttttggtcccttagattttcctcc 336  Q
    ||||||||||| |||||    ||||||||| |||| || | |||||||||||||| ||||||| |||||| |||||||||||||||| |  |||||||||    
T  18197142 ttaggcttatttgatccaaatgtccctcaaataatttcaaattttcattttggtcccacaattaataaaacgtaccttttggtccctcattttttcctcc 18197241  T
Q  337 gtttgccgaataaatcccgacggttaactttaac 370  Q
    ||||||| ||||||||| ||| ||||||||||||    
T  18197242 gtttgccaaataaatccagaccgttaactttaac 18197275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 239 - 411
Target Start/End: Original strand, 38240903 - 38241072
Alignment:
Q  239 aggcttattagatccgttggtccctcaattaatctccatttttcattttggtctcacaattgataaaaagtaccttttggtcccttagattttcctccgt 338  Q
    ||||||||| ||||| |||||||||  | |||| || | |||| ||||||||| ||||||| |||||| |||| |||  |||| | ||||||||||||||    
T  38240903 aggcttatttgatccattggtcccttgaataatttcaaatttttattttggtcccacaattaataaaacgtacgtttaagtccttcagattttcctccgt 38241002  T
Q  339 ttgccgaataaatcccgacggttaactttaacccaaattatgtctatggtggaccaatcttaaaagtggtcca 411  Q
    ||||| ||||||||||| | ||||| |||||| | ||  |||||||||||| ||||| ||||||| |||||||    
T  38241003 ttgccaaataaatcccggctgttaagtttaactccaa--atgtctatggtgaaccaa-cttaaaaatggtcca 38241072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 239 - 395
Target Start/End: Complemental strand, 53624480 - 53624326
Alignment:
Q  239 aggcttattagatccgttggtccctcaattaatctccatttttcattttggtctcacaattgataaaaagtaccttttggtcccttagattttcctccgt 338  Q
    ||||||||| |||||  ||||||||||| |||| || | ||||||||||| |||||||||| |||||| |||| |||||||| || |  |||| ||| ||    
T  53624480 aggcttatttgatccaatggtccctcaaataatttcaagttttcattttgatctcacaattaataaaacgtacattttggtcactcacttttttctcggt 53624381  T
Q  339 ttgccgaataaatcccgacggttaactttaacccaaattatgtctatggtggaccaa 395  Q
    ||||| ||||||||| ||||||||  |||||||| ||  |||| |||||||||||||    
T  53624380 ttgccaaataaatccagacggttaggtttaaccccaa--atgtatatggtggaccaa 53624326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 417 - 519
Target Start/End: Complemental strand, 36176445 - 36176346
Alignment:
Q  417 atcttttttattaaaagatgattgttagatcatgcatgtctagtgtatcttccagtgagtcaacaacacttaaccctttttcccatttcttcatcttcat 516  Q
    ||||||||||||||| |||||| ||||||| ||||||| |||  |||||||||| ||||||||||||||||||   ||||||| |||||||||||||| |    
T  36176445 atcttttttattaaaggatgatcgttagattatgcatgcctaccgtatcttcca-tgagtcaacaacacttaa--ttttttcctatttcttcatcttctt 36176349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 228 - 411
Target Start/End: Original strand, 27837906 - 27838086
Alignment:
Q  228 tagtattttttaggcttattagatccgttggtccctcaattaatctccatttttcattttggtctcacaattgataaaaagtaccttttggtcccttaga 327  Q
    ||||||||| |||| ||||||||||  ||| ||||| | ||||| ||   |||||||||||||| ||||||| ||||| |   | |||| |||||| |      
T  27837906 tagtattttctaggtttattagatcgtttgatcccttatttaatttcatgttttcattttggtcccacaattaataaatatggcgttttagtccctcacc 27838005  T
Q  328 ttttcctccgtttgccgaataaatcccgacggttaactttaacccaaattatgtctatggtggaccaatcttaaaagtggtcca 411  Q
    |||||||||||||||| ||||||||| ||| |||||||| |   |||   ||||||||||| ||||||| ||||||||||||||    
T  27838006 ttttcctccgtttgccaaataaatcctgactgttaacttaacttcaa---atgtctatggtagaccaattttaaaagtggtcca 27838086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 265 - 370
Target Start/End: Original strand, 34818109 - 34818214
Alignment:
Q  265 aattaatctccatttttcattttggtctcacaattgataaaaagtaccttttggtcccttagattttcctccgtttgccgaataaatcccgacggttaac 364  Q
    ||||||| || | |||||||||||||| ||||||| |||||| |||   |||||||||| |||||||||||| |||||| |||||||||| |  ||||||    
T  34818109 aattaatttcaagttttcattttggtcccacaattaataaaacgtatgatttggtccctcagattttcctccatttgccaaataaatcccaatagttaac 34818208  T
Q  365 tttaac 370  Q
    ||||||    
T  34818209 tttaac 34818214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 278 - 409
Target Start/End: Original strand, 10730921 - 10731050
Alignment:
Q  278 ttttcattttggtctcacaattgataaaaagtaccttttggtcccttagattttcctccgtttgccgaataaatcccgacggttaactttaacccaaatt 377  Q
    |||||||||||||| || |||| |||||||   | ||||||||| | |  |||| ||||||||||| ||||||||||||| ||||||||||||   ||      
T  10730921 ttttcattttggtcccataattaataaaaatggcattttggtccttcacttttttctccgtttgccaaataaatcccgactgttaactttaacttcaa-- 10731018  T
Q  378 atgtctatggtggaccaatcttaaaagtggtc 409  Q
    |||||||||||| ||||| |||||||||||||    
T  10731019 atgtctatggtgaaccaaccttaaaagtggtc 10731050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 238 - 352
Target Start/End: Complemental strand, 50810954 - 50810840
Alignment:
Q  238 taggcttattagatccgttggtccctcaattaatctccatttttcattttggtctcacaattgataaaaagtaccttttggtcccttagattttcctccg 337  Q
    |||||||| ||||||| ||||||||| || |||| || |||||||||||||||| || |||| ||||||   || |||| |||||| |  ||||||||||    
T  50810954 taggcttaatagatccattggtcccttaaataatttcaatttttcattttggtcccataattaataaaacacacgttttagtccctcattttttcctccg 50810855  T
Q  338 tttgccgaataaatc 352  Q
    |||||| ||||||||    
T  50810854 tttgccaaataaatc 50810840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 238 - 352
Target Start/End: Original strand, 50864910 - 50865024
Alignment:
Q  238 taggcttattagatccgttggtccctcaattaatctccatttttcattttggtctcacaattgataaaaagtaccttttggtcccttagattttcctccg 337  Q
    |||||||| ||||||| ||||||||| || |||| || |||||||||||||||| || |||| ||||||   || |||| |||||| |  ||||||||||    
T  50864910 taggcttaatagatccattggtcccttaaataatttcaatttttcattttggtcccataattaataaaacacacgttttagtccctcattttttcctccg 50865009  T
Q  338 tttgccgaataaatc 352  Q
    |||||| ||||||||    
T  50865010 tttgccaaataaatc 50865024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 239 - 416
Target Start/End: Complemental strand, 53614392 - 53614215
Alignment:
Q  239 aggcttattagatccgttggtccctcaattaatctccatttttcattttggtctcacaattgataaaaagtaccttttggtcccttagattttcctccgt 338  Q
    ||||||||||||||  ||||||||| | ||||| ||   |||| ||||||||| ||||||| ||||||    | |||| |||||| | |||||||||  |    
T  53614392 aggcttattagatcgtttggtcccttatttaatttcttgtttttattttggtcccacaattaataaaactggcgttttagtccctcacattttcctctat 53614293  T
Q  339 ttgccgaataaatcccgacggttaactttaaccc-aaattatgtctatggtggaccaatcttaaaagtggtccaccata 416  Q
    ||||| ||||||||| | || |||| |||||||| |||| |||||||||||||| ||  ||||| ||||||||||||||    
T  53614292 ttgccaaataaatccaggcg-ttaagtttaaccccaaataatgtctatggtggatcatccttaagagtggtccaccata 53614215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 278 - 416
Target Start/End: Complemental strand, 12108063 - 12107921
Alignment:
Q  278 ttttcattttggtctcacaattgataaaaagtaccttttggtcccttagattttcctccgtttgccgaataa---atcccgacggttaactttaaccc-a 373  Q
    |||||||||||||| ||||| | ||||||  ||  ||||||||||| |  |||||||||||||||| |||||   ||| ||   ||||| |||||||| |    
T  12108063 ttttcattttggtcccacaactaataaaacatatattttggtccctcactttttcctccgtttgccaaataataaatcacgggtgttaaatttaacccca 12107964  T
Q  374 aattatgtctatggtggaccaatcttaaaagtggtccaccata 416  Q
    ||| || | ||||||||||||| ||||||||||||||||||||    
T  12107963 aatgatatttatggtggaccaaccttaaaagtggtccaccata 12107921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 336 - 416
Target Start/End: Complemental strand, 27841732 - 27841652
Alignment:
Q  336 cgtttgccgaataaatcccgacggttaactttaacccaaattatgtctatggtggaccaatcttaaaagtggtccaccata 416  Q
    |||||| | ||||||| |||| |||||| ||||| | ||||||||| ||||||||||||| ||||| ||||||||||||||    
T  27841732 cgtttgtcaaataaattccgatggttaagtttaatctaaattatgtttatggtggaccaaccttaagagtggtccaccata 27841652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 278 - 411
Target Start/End: Complemental strand, 35372238 - 35372108
Alignment:
Q  278 ttttcattttggtctcacaattgataaaaagtaccttttggtcccttagattttcctccgtttgccgaataaatcccgacggttaactttaacccaaatt 377  Q
    |||||||||||||||||||||| |||||||   | |||| |||||| |  |||||||| ||||||| |||||||||  || |||||||| |   |||       
T  35372238 ttttcattttggtctcacaattaataaaaatggcgttttagtccctcaccttttcctctgtttgccaaataaatccttactgttaacttaacttcaa--- 35372142  T
Q  378 atgtctatggtggaccaatcttaaaagtggtcca 411  Q
    ||||||||| ||||||||| ||||||||||||||    
T  35372141 atgtctatgttggaccaattttaaaagtggtcca 35372108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 278 - 369
Target Start/End: Complemental strand, 40745546 - 40745455
Alignment:
Q  278 ttttcattttggtctcacaattgataaaaagtaccttttggtcccttagattttcctccgtttgccgaataaatcccgacggttaactttaa 369  Q
    |||||||||||||||||||||||||||||  | | ||||| ||||| ||||||||||  ||||||  ||||||||  ||| |||||||||||    
T  40745546 ttttcattttggtctcacaattgataaaactttcgttttgatccctcagattttcctttgtttgcaaaataaatcttgaccgttaactttaa 40745455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 237 - 352
Target Start/End: Original strand, 50809416 - 50809531
Alignment:
Q  237 ttaggcttattagatccgttggtccctcaattaatctccatttttcattttggtctcacaattgataaaaagtaccttttggtcccttagattttcctcc 336  Q
    ||||||||| ||||||  ||||||||| || |||| || |||||||||||||||| || |||| ||||||   || |||| |||||| |  |||||||||    
T  50809416 ttaggcttaatagatctattggtcccttaaataatttcaatttttcattttggtcccataattaataaaacacacgttttagtccctcactttttcctcc 50809515  T
Q  337 gtttgccgaataaatc 352  Q
    ||||||| ||||||||    
T  50809516 gtttgccaaataaatc 50809531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 237 - 352
Target Start/End: Complemental strand, 50866446 - 50866331
Alignment:
Q  237 ttaggcttattagatccgttggtccctcaattaatctccatttttcattttggtctcacaattgataaaaagtaccttttggtcccttagattttcctcc 336  Q
    ||||||||| ||||||  ||||||||| || |||| || |||||||||||||||| || |||| ||||||   || |||| |||||| |  |||||||||    
T  50866446 ttaggcttaatagatctattggtcccttaaataatttcaatttttcattttggtcccataattaataaaacacacgttttagtccctcactttttcctcc 50866347  T
Q  337 gtttgccgaataaatc 352  Q
    ||||||| ||||||||    
T  50866346 gtttgccaaataaatc 50866331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 355 - 416
Target Start/End: Original strand, 35371020 - 35371081
Alignment:
Q  355 gacggttaactttaacccaaattatgtctatggtggaccaatcttaaaagtggtccaccata 416  Q
    ||||||||| |||| ||||||| |||| ||||||||||||| ||||| ||||||||||||||    
T  35371020 gacggttaagtttagcccaaatgatgtttatggtggaccaaccttaagagtggtccaccata 35371081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 278 - 350
Target Start/End: Complemental strand, 37736161 - 37736089
Alignment:
Q  278 ttttcattttggtctcacaattgataaaaagtaccttttggtcccttagattttcctccgtttgccgaataaa 350  Q
    |||||||||||||||||||||| |||||| |||| |||| |||||| |  |||| ||||||||||| ||||||    
T  37736161 ttttcattttggtctcacaattaataaaacgtacgttttagtccctcacttttttctccgtttgccaaataaa 37736089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 278 - 370
Target Start/End: Original strand, 53612907 - 53612999
Alignment:
Q  278 ttttcattttggtctcacaattgataaaaagtaccttttggtcccttagattttcctccgtttgccgaataaatcccgacggttaactttaac 370  Q
    |||||||||||||| || |||| |||||||   | ||||  ||||| | ||||||||| ||||||| ||||||||||||| ||||||||||||    
T  53612907 ttttcattttggtcccataattaataaaaatggcgttttattccctcacattttcctctgtttgccaaataaatcccgaccgttaactttaac 53612999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 417 - 467
Target Start/End: Complemental strand, 28909516 - 28909466
Alignment:
Q  417 atcttttttattaaaagatgattgttagatcatgcatgtctagtgtatctt 467  Q
    |||||||||||||||||| ||  ||||||||||||||||||| ||||||||    
T  28909516 atcttttttattaaaagaggacggttagatcatgcatgtctactgtatctt 28909466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 232 - 409
Target Start/End: Original strand, 41263628 - 41263803
Alignment:
Q  232 attttttaggcttattagatccgttggtccctcaattaatctccatttttcattttggtctcacaattgataaaaagtaccttttggtcccttagatttt 331  Q
    ||||| |||||||||||||||  ||||||||| | ||||| ||   |||||||||||||| |||| ||  ||||||   | ||||||||| | |  ||||    
T  41263628 attttataggcttattagatcgtttggtcccttatttaatttcatattttcattttggtcccacatttattaaaaatggcattttggtccgtcatctttt 41263727  T
Q  332 cctccgtttgccgaataaatcccgacggttaactttaacccaaattatgtctatggtggaccaatcttaaaagtggtc 409  Q
     ||||||||| | | |||||||| |  |||||||||||| | ||  || ||||||||||| ||| |||||||||||||    
T  41263728 tctccgtttgtcaattaaatcccaagtgttaactttaactctaa--atatctatggtggatcaaccttaaaagtggtc 41263803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 278 - 416
Target Start/End: Original strand, 53420352 - 53420490
Alignment:
Q  278 ttttcattttggtctcacaattgataaaaagtaccttttggtcccttagattttcctccgtttgccgaataaatccc--gacggttaactttaacccaaa 375  Q
    ||||||||||||||  |||||| |||||| |||| ||||||||||| |  |||| ||||||||  | ||||||||||  | |  |||| |||||||  ||    
T  53420352 ttttcattttggtcctacaattaataaaacgtacgttttggtccctcacttttttctccgtttatcaaataaatccctagtctattaagtttaaccacaa 53420451  T
Q  376 ttatgtctatggtggaccaatcttaaaagtggtccaccata 416  Q
      ||||||||||||||||||  ||||||||| |||||||||    
T  53420452 --atgtctatggtggaccaactttaaaagtgatccaccata 53420490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 249 - 354
Target Start/End: Complemental strand, 38247585 - 38247480
Alignment:
Q  249 gatccgttggtccctcaattaatctccatttttcattttggtctcacaattgataaaaagtaccttttggtcccttagattttcctccgtttgccgaata 348  Q
    ||||| ||||||||| ||||||| |||| ||||||||||||||  | || | |||||| |||| ||||||| |||||| |||  | ||||||||| || |    
T  38247585 gatccattggtcccttaattaatttccaattttcattttggtcatataagtaataaaacgtacattttggttccttagttttcacaccgtttgccaaaaa 38247486  T
Q  349 aatccc 354  Q
    ||||||    
T  38247485 aatccc 38247480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 240 - 416
Target Start/End: Complemental strand, 41264771 - 41264595
Alignment:
Q  240 ggcttattagatccgttggtccctcaattaatctccatttttcattttggtctcacaattgataaaaagtaccttttggtcccttagattttcctccgtt 339  Q
    ||||||||||||   ||||||||| | ||||| ||   ||||||||||||||||||| || |||||||   | ||||| ||||| |  |||| |||||||    
T  41264771 ggcttattagattgtttggtcccttatttaatttcatgttttcattttggtctcacatttaataaaaatggcgttttgatccctcacctttttctccgtt 41264672  T
Q  340 tgccgaataaatcccgacggttaactttaacccaaattatgtctatggtggaccaatcttaaaagtggtccaccata 416  Q
    |||| |||||||| | || ||||| |||||   |||| |||| ||||||||| ||   |||| |||||| |||||||    
T  41264671 tgccaaataaatctcaaccgttaagtttaataaaaatgatgtttatggtggatcatctttaagagtggtacaccata 41264595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 278 - 392
Target Start/End: Complemental strand, 53194950 - 53194837
Alignment:
Q  278 ttttcattttggtctcacaattgataaaaagtaccttttggtcccttagattttcctccgtttgccgaataaatcc-cgacggttaactttaacccaaat 376  Q
    |||||||||||||| || |||| |||||| |||| ||||||||||| |  ||||||||  |||||| |||||||||  | | ||||| |||||| ||||     
T  53194950 ttttcattttggtcccataattaataaaacgtacgttttggtccctcactttttcctctatttgccaaataaatccatgtctgttaagtttaactcaaa- 53194852  T
Q  377 tatgtctatggtggac 392  Q
     |||||||||||||||    
T  53194851 -atgtctatggtggac 53194837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 256 - 294
Target Start/End: Complemental strand, 10340071 - 10340033
Alignment:
Q  256 tggtccctcaattaatctccatttttcattttggtctca 294  Q
    ||||||||||| |||| ||||||||||||||||||||||    
T  10340071 tggtccctcaactaatttccatttttcattttggtctca 10340033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 278 - 372
Target Start/End: Original strand, 53187595 - 53187688
Alignment:
Q  278 ttttcattttggtctcacaattgataaaaagtaccttttggtcccttagattttcctccgtttgccgaataaatcccgacggttaactttaaccc 372  Q
    ||||||||||| ||| |||||| |||||| |||   |||||||||| |  ||||| |||||||||| |||||||||| || ||||| ||||||||    
T  53187595 ttttcattttgatcttacaattaataaaatgta-tgtttggtccctcactttttcttccgtttgccaaataaatccctaccgttaagtttaaccc 53187688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 278 - 354
Target Start/End: Complemental strand, 53421841 - 53421765
Alignment:
Q  278 ttttcattttggtctcacaattgataaaaagtaccttttggtcccttagattttcctccgtttgccgaataaatccc 354  Q
    |||||||||| |||  |||||| |||||| |||| ||||||||||| |  |||| ||| ||||||| ||||||||||    
T  53421841 ttttcattttagtcctacaattaataaaacgtacgttttggtccctcacttttttctctgtttgccaaataaatccc 53421765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1152 (Bit Score: 91; Significance: 8e-44; HSPs: 1)
Name: scaffold1152
Description:

Target: scaffold1152; HSP #1
Raw Score: 91; E-Value: 8e-44
Query Start/End: Original strand, 239 - 409
Target Start/End: Complemental strand, 2594 - 2426
Alignment:
Q  239 aggcttattagatccgttggtccctcaattaatctccatttttcattttggtctcacaattgataaaaagtaccttttggtcccttagattttcctccgt 338  Q
    ||||||||||||||  ||||||||||||||||| |||||||| |||||||||| ||||||| |||||||||||||||||||||||||| |||||||| ||    
T  2594 aggcttattagatcaattggtccctcaattaatttccatttt-cattttggtcccacaattaataaaaagtaccttttggtcccttagtttttcctctgt 2496  T
Q  339 ttgccgaataaatcccgacggttaactttaacccaaattatgtctatggtggaccaatcttaaaagtggtc 409  Q
    || || ||||||| ||||| |||||||||||| | || |||||  |||||||||||| |||||||||||||    
T  2495 tttccaaataaattccgactgttaactttaactccaaatatgt-aatggtggaccaaccttaaaagtggtc 2426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0077 (Bit Score: 86; Significance: 7e-41; HSPs: 2)
Name: scaffold0077
Description:

Target: scaffold0077; HSP #1
Raw Score: 86; E-Value: 7e-41
Query Start/End: Original strand, 236 - 416
Target Start/End: Complemental strand, 54307 - 54126
Alignment:
Q  236 tttaggcttattagatccgttggtccctcaattaatctccatttttcattttggtctcacaattgataaaaagtaccttttggtcccttagattttcctc 335  Q
    |||||||||||| ||||| |||||||||||| |||| || | |||| ||||||||| ||||||| |||||| || | ||||||||||| | |||||||||    
T  54307 tttaggcttatttgatccattggtccctcaaataatttcaagttttaattttggtcgcacaattaataaaacgtgcgttttggtccctcaaattttcctc 54208  T
Q  336 cgtttgccgaataaatcccgacggttaactttaa-cccaaattatgtctatggtggaccaatcttaaaagtggtccaccata 416  Q
    |||||||| ||||||||  ||| ||||| | ||| ||||||| |||||||||||||||||| ||||||||||||||||||||    
T  54207 cgtttgccaaataaatcgtgactgttaagtataaccccaaatgatgtctatggtggaccaaccttaaaagtggtccaccata 54126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0077; HSP #2
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 265 - 409
Target Start/End: Original strand, 52615 - 52757
Alignment:
Q  265 aattaatctccatttttcattttggtctcacaattgataaaaagtaccttttggtcccttagattttcctccgtttgccgaataaatcccgacggttaac 364  Q
    ||||||| || | ||||||||||| || ||||||| |||||| |||| ||||||||||| ||||||| ||||||||||| ||||||||||||| ||||||    
T  52615 aattaatttcaagttttcattttgatcccacaattaataaaatgtacgttttggtccctcagatttttctccgtttgccaaataaatcccgacagttaac 52714  T
Q  365 tttaacccaaattatgtctatggtggaccaatcttaaaagtggtc 409  Q
    ||||||   ||  |||| ||||||||||||| ||||||| |||||    
T  52715 tttaactttaa--atgtatatggtggaccaaccttaaaaatggtc 52757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0031 (Bit Score: 85; Significance: 3e-40; HSPs: 2)
Name: scaffold0031
Description:

Target: scaffold0031; HSP #1
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 241 - 416
Target Start/End: Complemental strand, 125350 - 125174
Alignment:
Q  241 gcttattagatccgttggtccctcaattaatctccatttttcattttggtctcacaattgataaaaagtaccttttggtcccttagattttcctccgttt 340  Q
    ||||||| |||||  ||||||||||| |||| || | |||||||||||||| ||||||| |||||| |||||||||||||||| |  |||||||||||||    
T  125350 gcttatttgatccaatggtccctcaaataatttcaaattttcattttggtcccacaattaataaaacgtaccttttggtccctcactttttcctccgttt 125251  T
Q  341 gccgaataaatcccgacggttaactttaa-cccaaattatgtctatggtggaccaatcttaaaagtggtccaccata 416  Q
    ||| |||||||||  |||||||| ||||| ||||||| |||| |||| |||||||| ||||||||||||||||||||    
T  125250 gccaaataaatcctaacggttaagtttaaccccaaatgatgtatatgatggaccaaccttaaaagtggtccaccata 125174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0031; HSP #2
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 233 - 416
Target Start/End: Original strand, 123960 - 124141
Alignment:
Q  233 ttttttaggcttattagatccgttggtccctcaattaatctccatttttcattttggtctcacaattgataaaaagtaccttttggtcccttagattttc 332  Q
    |||||| |||||||| |||||  |||||| |||| |||| || | |||||||||||||| ||||||| |||||| |||| ||||||||||| |  |||||    
T  123960 tttttttggcttatttgatccaatggtccttcaaataatttcaagttttcattttggtcccacaattaataaaacgtacattttggtccctcactttttc 124059  T
Q  333 ctccgtttgccgaataaatcccgacggttaactttaacccaaattatgtctatggtggaccaatcttaaaagtggtccaccata 416  Q
    ||| ||||||| |||||||||  |||||||| |||||||| ||  || ||||||||||||||| ||||| ||||||||||||||    
T  124060 ctctgtttgccaaataaatccttacggttaagtttaaccccaa--atatctatggtggaccaaccttaagagtggtccaccata 124141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 85; Significance: 3e-40; HSPs: 22)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 256 - 416
Target Start/End: Complemental strand, 27705418 - 27705258
Alignment:
Q  256 tggtccctcaattaatctccatttttcattttggtctcacaattgataaaaagtaccttttggtcccttagattttcctccgtttgccgaataaatcccg 355  Q
    |||| |||||| |||| || | ||||||||||||||  |||||| |||||| |||| ||||||||||| |||||||||||| |||||| ||||||| | |    
T  27705418 tggttcctcaaataatttcaagttttcattttggtcatacaattaataaaacgtacgttttggtccctcagattttcctccttttgccaaataaatacag 27705319  T
Q  356 acggttaactttaacccaaattatgtctatggtggaccaatcttaaaagtggtccaccata 416  Q
    || ||||||||||| |||||| |||||||||||||||||| ||||||||||||||||||||    
T  27705318 acagttaactttaatccaaatgatgtctatggtggaccaaccttaaaagtggtccaccata 27705258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 239 - 411
Target Start/End: Complemental strand, 325304 - 325134
Alignment:
Q  239 aggcttattagatccgttggtccctcaattaatctccatttttcattttggtctcacaattgataaaaagtaccttttggtcccttagattttcctccgt 338  Q
    ||||||||| ||||   ||||||||||| |||| || | |||||||||||||| ||||||| |||||| |||||||||||||||| |  |||||||||||    
T  325304 aggcttatttgatctaatggtccctcaaataatttcaagttttcattttggtcccacaattaataaaacgtaccttttggtccctcaagttttcctccgt 325205  T
Q  339 ttgccgaataaatcccgacggttaactttaacccaaattatgtctatggtggaccaatcttaaaagtggtcca 411  Q
    ||||| ||||||||||||| |||||||||||| | ||  |||||||||||||||||| ||||| |||||||||    
T  325204 ttgccaaataaatcccgactgttaactttaactctaa--atgtctatggtggaccaaccttaatagtggtcca 325134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 239 - 417
Target Start/End: Original strand, 22047729 - 22047908
Alignment:
Q  239 aggcttattagatccgttggtccctcaattaatctccatttttcattttggtctcacaattgataaaaagtaccttttggtcccttagattttcctccgt 338  Q
    ||||||||| |||||  |||||||| ||||||| || | |||||||||||||| ||||||| |||||| |||| ||||||||||| |  |||||||||||    
T  22047729 aggcttatttgatccaatggtcccttaattaatttcaagttttcattttggtcccacaattaataaaacgtacgttttggtccctcattttttcctccgt 22047828  T
Q  339 ttgccgaataaatcccgacggttaactttaac-ccaaattatgtctatggtggaccaatcttaaaagtggtccaccataa 417  Q
    ||||| ||||||||| | | ||||| |||||| | |||| |||||||||||||| ||| ||||| |||||||||||||||    
T  22047829 ttgccaaataaatcctggctgttaagtttaactctaaatgatgtctatggtggatcaaccttaagagtggtccaccataa 22047908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 242 - 416
Target Start/End: Original strand, 39603853 - 39604028
Alignment:
Q  242 cttattagatccgttggtccctcaattaatctccatttttcattttggtctcacaattgataaaaagtaccttttggtcccttagattttcctccgtttg 341  Q
    |||||| ||||| ||| |||||||| |||| || | ||||||||||| || ||||||| |||||| |||| ||||||||||| | |||||||||||||||    
T  39603853 cttatttgatccattgatccctcaaataatttcaagttttcattttgatcccacaattaataaaacgtacgttttggtccctcaaattttcctccgtttg 39603952  T
Q  342 ccgaataaatcccgacggttaactttaa-cccaaattatgtctatggtggaccaatcttaaaagtggtccaccata 416  Q
    || ||||||||  ||| ||||| ||||| ||||||| ||||||||||| |||||| |||||||||| |||||||||    
T  39603953 ccaaataaatcatgactgttaagtttaaccccaaatgatgtctatggtagaccaaccttaaaagtgatccaccata 39604028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 239 - 416
Target Start/End: Complemental strand, 30859291 - 30859113
Alignment:
Q  239 aggcttattagatccgttggtccctcaattaatctccatttttcattttggtctcacaattgataaaaagtaccttttggtcccttagattttcctccgt 338  Q
    ||||||||| ||| | || ||||||||| |||| || | |||||||||||||| ||||||| |||||| |||| |||  |||||| | ||||||||| ||    
T  30859291 aggcttatttgattcattagtccctcaaataatttcaagttttcattttggtcccacaattaataaaacgtacgtttaagtccctcacattttcctctgt 30859192  T
Q  339 ttgccgaataaatcccgacggttaactttaa-cccaaattatgtctatggtggaccaatcttaaaagtggtccaccata 416  Q
    ||||| ||||| ||  ||| ||||| ||||| ||||||| |||||||||||||||||||||||| ||||||||||||||    
T  30859191 ttgccaaataagtcttgaccgttaagtttaaccccaaatgatgtctatggtggaccaatcttaagagtggtccaccata 30859113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 236 - 416
Target Start/End: Original strand, 30910735 - 30910916
Alignment:
Q  236 tttaggcttattagatccgttggtccctcaattaatctccatttttcattttggtctcacaattgataaaaagtaccttttggtcccttagattttcctc 335  Q
    |||||||||||||||||  ||||||||| | ||||| ||   |||||||||||||| ||||||| |||||||   | |||| |||||| | |||||||||    
T  30910735 tttaggcttattagatcgtttggtcccttatttaatttcatgttttcattttggtcccacaattaataaaaatggcgttttagtccctcacattttcctc 30910834  T
Q  336 cgtttgccgaataaatcccgacggttaactttaac-ccaaattatgtctatggtggaccaatcttaaaagtggtccaccata 416  Q
     |||| || |||||||| |||| |||||||||||| |||||| |||||| ||||||||||| ||||| ||||||||||||||    
T  30910835 tgtttaccaaataaatctcgactgttaactttaacaccaaatgatgtctttggtggaccaaccttaagagtggtccaccata 30910916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 237 - 354
Target Start/End: Original strand, 34894144 - 34894261
Alignment:
Q  237 ttaggcttattagatccgttggtccctcaattaatctccatttttcattttggtctcacaattgataaaaagtaccttttggtcccttagattttcctcc 336  Q
    ||||||||||||||||| ||||||||| ||||||| ||||||||||||||||||| |  || | |||||||||||||||||||||||||| |||  ||||    
T  34894144 ttaggcttattagatccattggtcccttaattaatttccatttttcattttggtcccgtaagtaataaaaagtaccttttggtcccttagttttgtctcc 34894243  T
Q  337 gtttgccgaataaatccc 354  Q
    ||||||| || |||||||    
T  34894244 gtttgccaaaaaaatccc 34894261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 265 - 403
Target Start/End: Complemental strand, 39605562 - 39605426
Alignment:
Q  265 aattaatctccatttttcattttggtctcacaattgataaaaagtaccttttggtcccttagattttcctccgtttgccgaataaatcccgacggttaac 364  Q
    ||||||| || | |||||||||||||| ||||||| ||||||  ||| ||||||||||| ||||||||||||||||||| ||||||||| ||||||||||    
T  39605562 aattaatttcaagttttcattttggtcccacaattaataaaacatacgttttggtccctcagattttcctccgtttgccaaataaatcctgacggttaac 39605463  T
Q  365 tttaacccaaattatgtctatggtggaccaatcttaaaa 403  Q
    || |||   ||  |||| |||||||||||||||||||||    
T  39605462 ttcaactttaa--atgtatatggtggaccaatcttaaaa 39605426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 237 - 343
Target Start/End: Complemental strand, 34899072 - 34898966
Alignment:
Q  237 ttaggcttattagatccgttggtccctcaattaatctccatttttcattttggtctcacaattgataaaaagtaccttttggtcccttagattttcctcc 336  Q
    ||||||||||||||||| ||||||||| ||||||| | ||||||||||||||||| || || | ||||||||||| |||||||||||||| |||  ||||    
T  34899072 ttaggcttattagatccattggtcccttaattaattttcatttttcattttggtcccataagtaataaaaagtacattttggtcccttagttttgtctcc 34898973  T
Q  337 gtttgcc 343  Q
    |||||||    
T  34898972 gtttgcc 34898966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 278 - 409
Target Start/End: Original strand, 30857836 - 30857965
Alignment:
Q  278 ttttcattttggtctcacaattgataaaaagtaccttttggtcccttagattttcctccgtttgccgaataaatcccgacggttaactttaacccaaatt 377  Q
    |||||||||||||| ||||||| |||||| |||  ||||||||| | |||||||||||| |||| | ||||||||   || ||||||||||||   ||      
T  30857836 ttttcattttggtcccacaattaataaaacgtatgttttggtccttcagattttcctccttttgtcaaataaatcttaacagttaactttaactttaa-- 30857933  T
Q  378 atgtctatggtggaccaatcttaaaagtggtc 409  Q
    ||||||||| |||||||| |||||||||||||    
T  30857934 atgtctatgatggaccaaccttaaaagtggtc 30857965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 255 - 416
Target Start/End: Original strand, 8521268 - 8521427
Alignment:
Q  255 ttggtccctcaattaatctccatttttcattttggtctcacaattgataaaaagtaccttttggtcccttagattttcctccgtttgccgaataaatccc 354  Q
    ||||||||| ||||||| || | |||||||||||||| || || | ||||||   |  ||||||||||| |  |||  ||||||  | | ||||||||||    
T  8521268 ttggtcccttaattaatttcaagttttcattttggtcccataactaataaaactcatgttttggtccctcacgtttgtctccgtcagtcaaataaatccc 8521367  T
Q  355 gacggttaactttaacccaaattatgtctatggtggaccaatcttaaaagtggtccaccata 416  Q
    |||||||||||||||||| ||  |||| ||||||||||||| ||||| | ||||||||||||    
T  8521368 gacggttaactttaaccccaa--atgtgtatggtggaccaaccttaagaatggtccaccata 8521427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 420 - 486
Target Start/End: Complemental strand, 27705221 - 27705156
Alignment:
Q  420 ttttttattaaaagatgattgttagatcatgcatgtctagtgtatcttccagtgagtcaacaacact 486  Q
    ||||||||||||||||||| |||||||| |||||||||| |  ||||||||||||||||||||||||    
T  27705221 ttttttattaaaagatgatcgttagatc-tgcatgtctactacatcttccagtgagtcaacaacact 27705156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 249 - 354
Target Start/End: Original strand, 24503191 - 24503296
Alignment:
Q  249 gatccgttggtccctcaattaatctccatttttcattttggtctcacaattgataaaaagtaccttttggtcccttagattttcctccgtttgccgaata 348  Q
    ||||| ||||||||| |||||||  ||| |||||||||||||| || || | |||||| ||||||||||||||||||| |||  ||| ||||||| || |    
T  24503191 gatccattggtcccttaattaattaccaattttcattttggtcccataagtaataaaacgtaccttttggtcccttagttttctctctgtttgccaaaaa 24503290  T
Q  349 aatccc 354  Q
    ||||||    
T  24503291 aatccc 24503296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 240 - 408
Target Start/End: Complemental strand, 30912280 - 30912114
Alignment:
Q  240 ggcttattagatccgttggtccctcaattaatctccatttttcattttggtctcacaattgataaaaagtaccttttggtcccttagattttcctccgtt 339  Q
    |||||||||||||  || |||||| | ||||| ||   |||||||||||||| ||||||| ||||||    | |||| |||||| |  |||| |||||||    
T  30912280 ggcttattagatcgtttagtcccttatttaatttcatgttttcattttggtcccacaattaataaaagtggcgttttagtccctcacctttttctccgtt 30912181  T
Q  340 tgccgaataaatcccgacggttaactttaacccaaattatgtctatggtggaccaatcttaaaagtggt 408  Q
    |||| |||||||||| |  |||||||||||| | || |||  |||||||||||||| ||||||||||||    
T  30912180 tgccaaataaatcccaagtgttaactttaactccaaatat--ctatggtggaccaaccttaaaagtggt 30912114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 345 - 416
Target Start/End: Complemental strand, 1010377 - 1010308
Alignment:
Q  345 aataaatcccgacggttaactttaacccaaattatgtctatggtggaccaatcttaaaagtggtccaccata 416  Q
    |||||||||||||||||||||||||||| ||  |||| ||||||||||||| ||||| |||||||| |||||    
T  1010377 aataaatcccgacggttaactttaaccccaa--atgtgtatggtggaccaaccttaagagtggtccgccata 1010308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 238 - 416
Target Start/End: Complemental strand, 33174080 - 33173903
Alignment:
Q  238 taggcttattagatccgttggtccctcaattaatctccatttttcattttggtctcacaattgataaaaagtaccttttggtcccttagattttcctccg 337  Q
    |||||||||||||||  ||||||||| | ||||| ||   ||||||||||| || |||| || |||||||   | |||| |||||| |  |||||||| |    
T  33174080 taggcttattagatcgtttggtcccttatttaatttcatgttttcattttgatcccacatttaataaaaatggcgttttagtccctcaccttttcctctg 33173981  T
Q  338 tttgccgaataaatccc-gacggttaactttaacccaaattatgtctatggtggaccaatcttaaaagtggtccaccata 416  Q
    |||||| |||||||||  | | ||||| |||||||| ||  |||||||||||||||||| ||||| ||||||| ||||||    
T  33173980 tttgccaaataaatccttggctgttaagtttaaccccaa--atgtctatggtggaccaaccttaagagtggtctaccata 33173903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 328 - 417
Target Start/End: Original strand, 15548323 - 15548413
Alignment:
Q  328 ttttcctccgtttgccgaataaatcccgacggttaactttaaccc-aaattatgtctatggtggaccaatcttaaaagtggtccaccataa 417  Q
    |||||||||||||||| ||||||||| | | ||||| |||||||| |||| |||||| ||||||||||| ||||| | || ||||||||||    
T  15548323 ttttcctccgtttgccaaataaatcctgcctgttaagtttaaccctaaatgatgtctctggtggaccaaccttaagaatgatccaccataa 15548413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 236 - 416
Target Start/End: Complemental strand, 22308921 - 22308742
Alignment:
Q  236 tttaggcttattagatccgttggtccctcaattaatctccatttttcattttggtctcacaattgataaaaagtaccttttggtcccttagattttcctc 335  Q
    |||||||||||||||||  ||||||||  || |||| ||   |||||||||||||| || |||| ||||||    | |||| |||||| | ||||| |||    
T  22308921 tttaggcttattagatcgtttggtcccctaaataatttcatgttttcattttggtcccataattaataaaacaggcgttttagtccctcacattttgctc 22308822  T
Q  336 cgtttgccgaataaatcc-cgacggttaactttaacccaaattatgtctatggtggaccaatcttaaaagtggtccaccata 416  Q
    |||||||| |||||||||  |   ||||| |||||||| ||  |||||||||||||||| | ||||| ||||||||||||||    
T  22308821 cgtttgccaaataaatccatggttgttaagtttaaccccaa--atgtctatggtggacctaccttaagagtggtccaccata 22308742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 256 - 354
Target Start/End: Complemental strand, 24509138 - 24509040
Alignment:
Q  256 tggtccctcaattaatctccatttttcattttggtctcacaattgataaaaagtaccttttggtcccttagattttcctccgtttgccgaataaatccc 354  Q
    |||||||| |||||||  ||| |||||||||||||| || || | |||||| ||||||||||||||||||| |||  ||| ||||||| || |||||||    
T  24509138 tggtcccttaattaattaccaattttcattttggtcccataagtaataaaacgtaccttttggtcccttagttttctctctgtttgccaaaaaaatccc 24509040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 278 - 372
Target Start/End: Complemental strand, 22049216 - 22049122
Alignment:
Q  278 ttttcattttggtctcacaattgataaaaagtaccttttggtcccttagattttcctccgtttgccgaataaatcccgacggttaactttaaccc 372  Q
    |||||||||||||| || |||| |||||| |||| ||||||||||| |  |||||||| ||||| | ||||||||||  | ||||| ||||||||    
T  22049216 ttttcattttggtcccataattaataaaacgtacgttttggtccctcactttttcctctgtttggcaaataaatccctgctgttaagtttaaccc 22049122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 359 - 416
Target Start/End: Original strand, 1102736 - 1102791
Alignment:
Q  359 gttaactttaacccaaattatgtctatggtggaccaatcttaaaagtggtccaccata 416  Q
    |||||||||||||| ||  ||||||||||| |||||| ||||| ||||||||||||||    
T  1102736 gttaactttaaccccaa--atgtctatggtagaccaaccttaagagtggtccaccata 1102791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 359 - 416
Target Start/End: Complemental strand, 4127251 - 4127196
Alignment:
Q  359 gttaactttaacccaaattatgtctatggtggaccaatcttaaaagtggtccaccata 416  Q
    |||||||||||||| ||  ||||||||| | || ||||||||||||||||||||||||    
T  4127251 gttaactttaaccccaa--atgtctatgatagatcaatcttaaaagtggtccaccata 4127196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 85; Significance: 3e-40; HSPs: 32)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 222 - 416
Target Start/End: Complemental strand, 41874107 - 41873914
Alignment:
Q  222 ttattctagtattttttaggcttattagatccgttggtccctcaattaatctccatttttcattttggtctcacaattgataaaaagtaccttttggtcc 321  Q
    |||||||| | | ||||||||||||||||||| ||||||||||||||||| |||||||||||| ||||||||| |||| |||||||||| ||||||| ||    
T  41874107 ttattctaatttattttaggcttattagatccattggtccctcaattaatttccatttttcatcttggtctcataattaataaaaagtatcttttggccc 41874008  T
Q  322 cttagattttcctccgtttgccgaataaatcc-cgacggttaactttaacccaaattatgtctatggtggaccaatcttaaaagtggtccaccata 416  Q
     |||| ||||||||||||| || |||||||||  |   ||||| |||||||  ||  |||||||||||||||||| ||||| ||||||||||||||    
T  41874007 tttagcttttcctccgtttaccaaataaatccttggttgttaagtttaaccacaa--atgtctatggtggaccaaccttaagagtggtccaccata 41873914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 239 - 416
Target Start/End: Complemental strand, 45585128 - 45584950
Alignment:
Q  239 aggcttattagatccgttggtccctcaattaatctccatttttcattttggtctcacaattgataaaaagtaccttttggtcccttagattttcctccgt 338  Q
    ||||||||| |||||  | ||||||||| |||| || | |||||||||||||||||||||| |||||| |||||||||||||| | |  |||||||||||    
T  45585128 aggcttatttgatccaatagtccctcaaataatttcaagttttcattttggtctcacaattaataaaacgtaccttttggtccttcactttttcctccgt 45585029  T
Q  339 ttgccgaataaatcccgacggttaacttt-aacccaaattatgtctatggtggaccaatcttaaaagtggtccaccata 416  Q
    ||||| ||||||||| ||| ||||| ||| ||||||||| ||||||||||||| ||||  |||| |||| |||||||||    
T  45585028 ttgccaaataaatcctgaccgttaagtttaaacccaaatgatgtctatggtggcccaactttaagagtgctccaccata 45584950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 237 - 409
Target Start/End: Complemental strand, 49803016 - 49802846
Alignment:
Q  237 ttaggcttattagatccgttggtccctcaattaatctccatttttcattttggtctcacaattgataaaaagtaccttttggtcccttagattttcctcc 336  Q
    |||||||| |||||||  ||||||||| | ||||| ||   |||||||||||||| ||||||| |||||||  || |||| |||||| |  |||| ||||    
T  49803016 ttaggcttgttagatcgtttggtcccttatttaatttcatgttttcattttggtcccacaattaataaaaatgacgttttagtccctcatctttttctcc 49802917  T
Q  337 gtttgccgaataaatcccgacggttaactttaacccaaattatgtctatggtggaccaatcttaaaagtggtc 409  Q
    ||||||| |||||||||||||||||||||| ||| | ||  |||||||||||| ||||| |||||||||||||    
T  49802916 gtttgccaaataaatcccgacggttaacttcaactctaa--atgtctatggtgtaccaaccttaaaagtggtc 49802846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 236 - 416
Target Start/End: Original strand, 15232746 - 15232926
Alignment:
Q  236 tttaggcttattagatccgttggtccctcaattaatctccatttttcattttggtctcacaattgataaaaagtaccttttggtcccttagattttcctc 335  Q
    |||||||||||||||||  ||||||||| | ||||| ||   |||||||||||||| || |||| |||||||   | |||| |||||| | |||||||||    
T  15232746 tttaggcttattagatcatttggtcccttatttaatttcatgttttcattttggtcccataattaataaaaatggcgttttagtccctcacattttcctc 15232845  T
Q  336 cgtttgccgaataaatcccgacggttaactttaacccaaattatgtctatggtggaccaatcttaaaagtggtccaccata 416  Q
     ||||||| ||||||||  ||| ||||| |||||||||||| |||| ||| |||||||||  |||||||||||||| ||||    
T  15232846 tgtttgccaaataaatcatgaccgttaagtttaacccaaatgatgtatatagtggaccaactttaaaagtggtccatcata 15232926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 265 - 413
Target Start/End: Complemental strand, 15072883 - 15072736
Alignment:
Q  265 aattaatctccatttttcattttggtctcacaattgataaaaagtaccttttggtcccttagattttcctccgtttgccgaataaatcc-cgacggttaa 363  Q
    ||||||| || | |||||||||||||| ||||||| |||||| |||| |||||||||||||  |||||||||||||||| |||||||||  | | |||||    
T  15072883 aattaatttcaagttttcattttggtcccacaattaataaaacgtacattttggtcccttattttttcctccgtttgccaaataaatccatgtctgttaa 15072784  T
Q  364 ctttaacccaaattatgtctatggtggaccaatcttaaaagtggtccacc 413  Q
    ||||||||  ||  |||||||||||||||||| || || |||||||||||    
T  15072783 ctttaacctcaa--atgtctatggtggaccaacctaaagagtggtccacc 15072736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 259 - 411
Target Start/End: Original strand, 27814309 - 27814460
Alignment:
Q  259 tccctcaattaatctccatttttcattttggtctcacaattgataaaaagtaccttttggtcccttagattttcctccgtttgccgaataaatcccgacg 358  Q
    |||||||| |||| || | |||||||||| |||  | |||| |||||| |||||||||||||||| |  |||||||| ||||||| ||||||||||||||    
T  27814309 tccctcaaataatttcaagttttcattttagtcctataattaataaaacgtaccttttggtccctcattttttcctctgtttgccaaataaatcccgacg 27814408  T
Q  359 gttaacttt-aacccaaattatgtctatggtggaccaatcttaaaagtggtcca 411  Q
    ||||||||| ||| | ||  ||||||||||||||||||  ||||||||||||||    
T  27814409 gttaacttttaactctaa--atgtctatggtggaccaactttaaaagtggtcca 27814460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 278 - 416
Target Start/End: Complemental strand, 16965207 - 16965068
Alignment:
Q  278 ttttcattttggtctcacaattgataaaaagtaccttttggtcccttagattttcctccgtttgccgaataaatcccgacggttaactttaa-cccaaat 376  Q
    |||||||||||||| ||||||| |||||||  || |||| |||||||| |||||| |||||||  | ||||||| |||| |||||| ||||| |||||||    
T  16965207 ttttcattttggtcccacaattaataaaaatgacgttttagtcccttacattttcttccgtttatcaaataaattccgatggttaagtttaaccccaaat 16965108  T
Q  377 tatgtctatggtggaccaatcttaaaagtggtccaccata 416  Q
     |||| |||||||||||||  |||| ||||||||||||||    
T  16965107 gatgtatatggtggaccaactttaagagtggtccaccata 16965068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 230 - 367
Target Start/End: Complemental strand, 46111616 - 46111479
Alignment:
Q  230 gtattttttaggcttattagatccgttggtccctcaattaatctccatttttcattttggtctcacaattgataaaaagtaccttttggtcccttagatt 329  Q
    |||| ||||||||||||| ||| |  |||||||| || |||| || | |||| ||||||||| ||||||| |||||| |||||||||||| ||| |  ||    
T  46111616 gtatattttaggcttatttgattcaatggtcccttaaataatttcaagtttttattttggtcccacaattaataaaacgtaccttttggttcctcatttt 46111517  T
Q  330 ttcctccgtttgccgaataaatcccgacggttaacttt 367  Q
    ||||| |||||||| ||||||||||||| |||||||||    
T  46111516 ttccttcgtttgccaaataaatcccgactgttaacttt 46111479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 240 - 381
Target Start/End: Complemental strand, 52628991 - 52628850
Alignment:
Q  240 ggcttattagatccgttggtccctcaattaatctccatttttcattttggtctcacaattgataaaaagtaccttttggtcccttagattttcctccgtt 339  Q
    |||||||| ||||  | ||||||| || |||| || | |||| ||||||||| ||||||| |||||| |||||||||||||||| |  ||||||||||||    
T  52628991 ggcttatttgatctatcggtcccttaaataatttcaagttttaattttggtcccacaattaataaaacgtaccttttggtccctcattttttcctccgtt 52628892  T
Q  340 tgccgaataaatcccgacggttaactttaacccaaattatgt 381  Q
    |||| |||||||| | || ||||| |||||||| || |||||    
T  52628891 tgccaaataaatctcaaccgttaagtttaaccccaaatatgt 52628850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 256 - 406
Target Start/End: Complemental strand, 50444800 - 50444651
Alignment:
Q  256 tggtccctcaattaatctccatttttcattttggtctcacaattgataaaaagtaccttttggtcccttagattttcctccgtttgccgaataaatcccg 355  Q
    ||||||||||| |||| || | |||||||||| ||| ||||||| |||||| |||| ||||||||||| |  |||||||||| ||||| |||||||||      
T  50444800 tggtccctcaaataatttcaaattttcattttagtcccacaattaataaaacgtacattttggtccctcattttttcctccgattgccaaataaatccaa 50444701  T
Q  356 acggttaactttaac-ccaaattatgtctatggtggaccaatcttaaaagtg 406  Q
    || |||||||||||| |||||  | ||||||| |||||||| ||||| ||||    
T  50444700 accgttaactttaactccaaa--acgtctatgttggaccaaccttaagagtg 50444651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 235 - 362
Target Start/End: Complemental strand, 15234164 - 15234037
Alignment:
Q  235 ttttaggcttattagatccgttggtccctcaattaatctccatttttcattttggtctcacaattgataaaaagtaccttttggtcccttagattttcct 334  Q
    |||| |||||||||||||  ||||||||| | ||||| ||   |||||||||||||| ||||||| |||||||   | |||| |||||| | ||||||||    
T  15234164 tttttggcttattagatcgtttggtcccttatttaatttcatgttttcattttggtcccacaattaataaaaatggcgttttagtccctcacattttcct 15234065  T
Q  335 ccgtttgccgaataaatcccgacggtta 362  Q
    ||||||||| ||||||||||||| ||||    
T  15234064 ccgtttgccaaataaatcccgactgtta 15234037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 239 - 416
Target Start/End: Original strand, 16963831 - 16964006
Alignment:
Q  239 aggcttattagatccgttggtccctcaattaatctccatttttcattttggtctcacaattgataaaaagtaccttttggtcccttagattttcctccgt 338  Q
    ||||||||||||||  ||||||  | ||||||| ||   |||||||||||||| ||||||| |||||||     |||| |||||| |  |||||||||||    
T  16963831 aggcttattagatcgtttggtcttttaattaatttcatgttttcattttggtcccacaattaataaaaatggtgttttagtccctcatcttttcctccgt 16963930  T
Q  339 ttgccgaataaatcccgacggttaactttaacccaaattatgtctatggtggaccaatcttaaaagtggtccaccata 416  Q
    ||||| ||||||| | ||| |||||||||||| | ||  |||| |||| |||||||| ||||||||||||||| ||||    
T  16963931 ttgccaaataaatgctgactgttaactttaactctaa--atgtttatgatggaccaaccttaaaagtggtccatcata 16964006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 278 - 416
Target Start/End: Original strand, 23091387 - 23091525
Alignment:
Q  278 ttttcattttggtctcacaattgataaaaagtaccttttggtcccttagattttcctccgtttgccgaataaatccc--gacggttaactttaacccaaa 375  Q
    ||||||||||||| | |||||| |||||| |||| |||||||| || |  |||| ||||||||||| ||||||||||  | | ||||| ||||| |  ||    
T  23091387 ttttcattttggttttacaattaataaaacgtacgttttggtcactcacttttttctccgtttgccaaataaatccctagtctgttaagtttaatctcaa 23091486  T
Q  376 ttatgtctatggtggaccaatcttaaaagtggtccaccata 416  Q
      ||||||||||||||||||  |||||||||||||||||||    
T  23091487 --atgtctatggtggaccaactttaaaagtggtccaccata 23091525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 278 - 416
Target Start/End: Complemental strand, 35943527 - 35943390
Alignment:
Q  278 ttttcattttggtctcacaattgataaaaagtaccttttggtcccttagattttcctccgtttgccgaataaatccc--gacggttaactttaacccaaa 375  Q
    |||| ||||||||| ||||||| |||||| |||| ||||||||| | |  ||||||| |||||||| ||||||||||  | | ||||| |||||||| ||    
T  35943527 tttttattttggtcccacaattaataaaacgtacattttggtcc-tcactttttccttcgtttgccaaataaatcccctggctgttaagtttaaccctaa 35943429  T
Q  376 ttatgtctatggtggaccaatcttaaaagtggtccaccata 416  Q
      |||||||||||||||||| ||||| |||| |||||||||    
T  35943428 --atgtctatggtggaccaaccttaagagtgatccaccata 35943390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 234 - 417
Target Start/End: Original strand, 49801609 - 49801792
Alignment:
Q  234 tttttaggcttattagatccgttggtccctcaattaatctccatttttcattttggtctcacaattgataaaaagtaccttttggtcccttagattttcc 333  Q
    |||||||||||||||||||  ||||||||| | ||||| |    |||||||||||||| ||||||| |||||||     ||||| ||||| |  |||  |    
T  49801609 tttttaggcttattagatcatttggtcccttatttaattttatattttcattttggtcccacaattaataaaaatggtgttttgatccctcacgtttgtc 49801708  T
Q  334 tccgtttgccgaataaatcccgacggttaactttaacc-caaattatgtctatggtggaccaatcttaaaagtggtccaccataa 417  Q
    || ||||||| ||||||| ||||| ||||| ||||||| ||||| |||| || |||  ||||| |||||||||||||||||||||    
T  49801709 tctgtttgccaaataaat-ccgactgttaattttaacctcaaatgatgtttacggtaaaccaaccttaaaagtggtccaccataa 49801792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 238 - 353
Target Start/End: Complemental strand, 24499775 - 24499660
Alignment:
Q  238 taggcttattagatccgttggtccctcaattaatctccatttttcattttggtctcacaattgataaaaagtaccttttggtcccttagattttcctccg 337  Q
    |||||||||| |||  |||||||||  || |||| || | |||||||||||||||||||||| ||||||   || ||||||||||| |  ||||||||||    
T  24499775 taggcttatttgatttgttggtcccctaaataatttcaagttttcattttggtctcacaattaataaaactcacgttttggtccctcactttttcctccg 24499676  T
Q  338 tttgccgaataaatcc 353  Q
    ||| || |||||||||    
T  24499675 tttaccaaataaatcc 24499660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 417 - 514
Target Start/End: Complemental strand, 44278288 - 44278193
Alignment:
Q  417 atcttttttattaaaagatgattgttagatcatgcatgtctagtgtatcttccagtgagtcaacaacacttaaccctttttcccatttcttcatcttc 514  Q
    |||||||||||||||| ||||| ||||||| ||||||||||| | || ||||| || ||||||||||| ||||   | ||||||||||||||||||||    
T  44278288 atcttttttattaaaacatgatcgttagattatgcatgtctactctaccttcc-gtaagtcaacaacatttaa-tttctttcccatttcttcatcttc 44278193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 239 - 343
Target Start/End: Original strand, 52627512 - 52627617
Alignment:
Q  239 aggcttattagatccgttggtccctcaattaatctccatttttcattttggtctcacaattgataaaaa-gtaccttttggtcccttagattttcctccg 337  Q
    ||||||||| |||||  ||||||||||| |||| || | |||||||||||||| ||||||| |||||||  ||| |||||| || |||  ||||||||||    
T  52627512 aggcttatttgatccaatggtccctcaaataatttcaagttttcattttggtcccacaattaataaaaacatacattttggacctttaatttttcctccg 52627611  T
Q  338 tttgcc 343  Q
    ||||||    
T  52627612 tttgcc 52627617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 239 - 417
Target Start/End: Original strand, 14470853 - 14471030
Alignment:
Q  239 aggcttattagatccgttggtccctcaattaatctccatttttcattttggtctcacaattgataaaaagtaccttttggtcccttagattttcctccgt 338  Q
    ||||||||| |||||  |||||||  || |||| || | |||||||||||||| ||||||| |||||| ||||  ||  |||||| |  ||||||| |||    
T  14470853 aggcttatttgatccaatggtcccctaaataatttcaagttttcattttggtcccacaattaataaaacgtacggttaagtccctcactttttccttcgt 14470952  T
Q  339 ttgccgaataaatcccgacg-gttaactttaacccaaattatgtctatggtggaccaatcttaaaagtggtccaccataa 417  Q
    ||||| |||||||||    | ||||| |||||||| ||  | |||||| ||||||||| ||||| |||||||||||||||    
T  14470953 ttgccaaataaatccttcggtgttaagtttaaccccaa--acgtctatagtggaccaaccttaagagtggtccaccataa 14471030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 237 - 353
Target Start/End: Original strand, 15071337 - 15071453
Alignment:
Q  237 ttaggcttattagatccgttggtccctcaattaatctccatttttcattttggtctcacaattgataaaaagtaccttttggtcccttagattttcctcc 336  Q
    |||||||||||  |||| ||||||||  || |||| || | |||||||||||||| || |||| |||||| |||  ||||||||||| |  |||||||||    
T  15071337 ttaggcttatttaatccattggtcccctaaataatttcaagttttcattttggtcacataattaataaaacgtatgttttggtccctcactttttcctcc 15071436  T
Q  337 gtttgccgaataaatcc 353  Q
    |||| || |||||||||    
T  15071437 gtttaccaaataaatcc 15071453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 278 - 341
Target Start/End: Complemental strand, 34352036 - 34351973
Alignment:
Q  278 ttttcattttggtctcacaattgataaaaagtaccttttggtcccttagattttcctccgtttg 341  Q
    |||||||||||||| ||||||| |||||| |||||||||||||||| |  ||||||| ||||||    
T  34352036 ttttcattttggtcccacaattaataaaatgtaccttttggtccctcactttttcctacgtttg 34351973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 301 - 411
Target Start/End: Original strand, 46110341 - 46110449
Alignment:
Q  301 ataaaaagtaccttttggtcccttagattttcctccgtttgccgaataaatcccgacggttaactttaacccaaattatgtctatggtggaccaatctta 400  Q
    |||||| |||| |||||||| || |  |||| ||||||||||  |||||||| |||| |||||||||||| | ||  || ||||||||||||||| ||||    
T  46110341 ataaaacgtactttttggtcactcaagtttttctccgtttgctaaataaatctcgactgttaactttaactctaa--atatctatggtggaccaacctta 46110438  T
Q  401 aaagtggtcca 411  Q
    | |||||||||    
T  46110439 agagtggtcca 46110449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 378 - 416
Target Start/End: Complemental strand, 15746747 - 15746709
Alignment:
Q  378 atgtctatggtggaccaatcttaaaagtggtccaccata 416  Q
    |||||||||||||||||||||||| ||||||||||||||    
T  15746747 atgtctatggtggaccaatcttaagagtggtccaccata 15746709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 265 - 371
Target Start/End: Original strand, 44276145 - 44276251
Alignment:
Q  265 aattaatctccatttttcattttggtctcacaattgataaaaagtaccttttggtcccttagattttcctccgtttgccgaataaatcccgacggttaac 364  Q
    ||||||| |||||||||||||||||||||| |||| |||||| |||| ||||| ||| | |  |||| ||| ||||| | | ||||||| ||| |||||     
T  44276145 aattaatttccatttttcattttggtctcataattaataaaacgtacgttttgatccttcacttttttctctgtttgtcaattaaatcctgactgttaag 44276244  T
Q  365 tttaacc 371  Q
    |||||||    
T  44276245 tttaacc 44276251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 328 - 416
Target Start/End: Complemental strand, 44999492 - 44999405
Alignment:
Q  328 ttttcctccgtttgccgaataaatcccga-cggttaactttaacccaaattatgtctatggtggaccaatcttaaaagtggtccaccata 416  Q
    |||||||| ||||||| |||||||||| | | |||||||||||||  ||  |||||||||||||||||||| ||| |||||| |||||||    
T  44999492 ttttcctctgtttgccaaataaatccctagctgttaactttaaccttaa--atgtctatggtggaccaatcgtaagagtggttcaccata 44999405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 265 - 353
Target Start/End: Complemental strand, 44278442 - 44278354
Alignment:
Q  265 aattaatctccatttttcattttggtctcacaattgataaaaagtaccttttggtcccttagattttcctccgtttgccgaataaatcc 353  Q
    ||||||| || | |||||||||||||| ||| ||| |||||| |||| ||||||||||| |  |||| ||||||||||| |||| ||||    
T  44278442 aattaatttcaagttttcattttggtcccacgattaataaaacgtacgttttggtccctcatttttttctccgtttgccaaatagatcc 44278354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 417 - 484
Target Start/End: Original strand, 12665997 - 12666064
Alignment:
Q  417 atcttttttattaaaagatgattgttagatcatgcatgtctagtgtatcttccagtgagtcaacaaca 484  Q
    |||||||||| |||||||| | |||||||||||| |||| || |||||||| || ||| |||||||||    
T  12665997 atcttttttaataaaagataaatgttagatcatgtatgtttattgtatcttacaatgaatcaacaaca 12666064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 350 - 416
Target Start/End: Original strand, 34350219 - 34350286
Alignment:
Q  350 atcccgacggttaactttaaccc-aaattatgtctatggtggaccaatcttaaaagtggtccaccata 416  Q
    |||||||  ||||| |||||||| |||| |||||||||||||| ||| ||||| ||||||||||||||    
T  34350219 atcccgatcgttaagtttaaccccaaatgatgtctatggtggatcaaccttaagagtggtccaccata 34350286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 255 - 306
Target Start/End: Complemental strand, 51042445 - 51042394
Alignment:
Q  255 ttggtccctcaattaatctccatttttcattttggtctcacaattgataaaa 306  Q
    ||||||||| ||||||| |||| |||||||||||||| ||||||| ||||||    
T  51042445 ttggtcccttaattaatttccaattttcattttggtcccacaattaataaaa 51042394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 420 - 490
Target Start/End: Complemental strand, 6049331 - 6049261
Alignment:
Q  420 ttttttattaaaagatgattgttagatcatgcatgtctagtgtatcttccagtgagtcaacaacacttaac 490  Q
    ||||||||||||||| ||   |||||||||||||||||| |||||||| || |||  |||||||| |||||    
T  6049331 ttttttattaaaagaggaccattagatcatgcatgtctactgtatcttacaatgaaccaacaacaattaac 6049261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 378 - 416
Target Start/End: Complemental strand, 9226196 - 9226158
Alignment:
Q  378 atgtctatggtggaccaatcttaaaagtggtccaccata 416  Q
    |||||||||||||| ||| ||||||||||||||||||||    
T  9226196 atgtctatggtggatcaaccttaaaagtggtccaccata 9226158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 378 - 416
Target Start/End: Complemental strand, 13147397 - 13147359
Alignment:
Q  378 atgtctatggtggaccaatcttaaaagtggtccaccata 416  Q
    |||||||||||||||||| ||||| ||||||||||||||    
T  13147397 atgtctatggtggaccaaccttaatagtggtccaccata 13147359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 79; Significance: 1e-36; HSPs: 43)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 234 - 416
Target Start/End: Complemental strand, 32798656 - 32798474
Alignment:
Q  234 tttttaggcttattagatccgttggtccctcaattaatctccatttttcattttggtctcacaattgataaaaagtaccttttggtcccttagattttcc 333  Q
    |||||||||||||| ||| |  ||||||||||| |||| || | |||||||||||||| ||||||| |||||| ||||||||| |||||| |  |||| |    
T  32798656 tttttaggcttatttgatgcaatggtccctcaaataatttcaagttttcattttggtcccacaattaataaaacgtaccttttagtccctcaattttttc 32798557  T
Q  334 tccgtttgccgaataaatcccgacggttaactttaacccaaattatgtctatggtggaccaatcttaaaagtggtccaccata 416  Q
    |||||||| | |||||||||  |||||||| |||||| ||||| |||||||||||||| ||| ||||| ||||||||||||||    
T  32798556 tccgtttgtcaaataaatcctcacggttaagtttaactcaaatgatgtctatggtggatcaaccttaagagtggtccaccata 32798474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 239 - 417
Target Start/End: Complemental strand, 44076482 - 44076303
Alignment:
Q  239 aggcttattagatccgttggtccctcaattaatctccatttttcattttggtctcacaattgataaaaagtaccttttggtcccttagattttcctccgt 338  Q
    ||||||||| |||||  ||||||||||| |||| || | |||| ||||||||| ||||||| |||||| ||| |||||||| ||| |  |||||||||||    
T  44076482 aggcttatttgatccaatggtccctcaaataatttcaaatttttattttggtcccacaattaataaaacgtatcttttggtgcctcaatttttcctccgt 44076383  T
Q  339 ttgccgaataaatcccgacggttaactttaa-cccaaattatgtctatggtggaccaatcttaaaagtggtccaccataa 417  Q
    ||||| |||||||||| || ||||| ||||| ||||||| |||||||||||||| |||  |||||| || ||||||||||    
T  44076382 ttgccaaataaatccctacagttaagtttaaccccaaatgatgtctatggtggaacaacattaaaaatgatccaccataa 44076303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 240 - 417
Target Start/End: Complemental strand, 45281306 - 45281130
Alignment:
Q  240 ggcttattagatccgttggtccctcaattaatctccatttttcattttggtctcacaattgataaaaagtaccttttggtcccttagattttcctccgtt 339  Q
    |||||||| |||||  | ||||||||| |||| || | ||||||||||||||  |||||| ||||||| ||  ||||| ||| | |||||||||||| ||    
T  45281306 ggcttatttgatccaatagtccctcaaataatttcaagttttcattttggtccaacaattaataaaaa-tatgttttgatccttcagattttcctccatt 45281208  T
Q  340 tgccgaataaatcccgacggttaactttaacccaaattatgtctatggtggaccaatcttaaaagtggtccaccataa 417  Q
    |||| |||||||||| || ||||||||||| |||||| ||||||| |||||||||| ||||| ||||||| |||||||    
T  45281207 tgccaaataaatcccaacagttaactttaatccaaatgatgtctacggtggaccaaccttaagagtggtctaccataa 45281130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 417 - 533
Target Start/End: Complemental strand, 45281097 - 45280983
Alignment:
Q  417 atcttttttattaaaagatgattgttagatcatgcatgtctagtgtatcttccagtgagtcaacaacacttaaccctttttcccatttcttcatcttcat 516  Q
    |||||||||||||||||||||  ||||||||||||||||||| ||||||||||| |||||||||||||||||| |  |||||||||||| ||||||||||    
T  45281097 atcttttttattaaaagatgaacgttagatcatgcatgtctactgtatcttcca-tgagtcaacaacacttaa-ctgttttcccatttcatcatcttcat 45281000  T
Q  517 ccctctcatcttcatca 533  Q
    |||| | | ||||||||    
T  45280999 ccctttaaccttcatca 45280983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 238 - 416
Target Start/End: Complemental strand, 32695395 - 32695216
Alignment:
Q  238 taggcttattagatccgttggtccctcaattaatctccatttttcattttggtctcacaattgataaaaagtaccttttggtcccttagattttcctccg 337  Q
    |||||||||| ||| | |||||||||||| |||| || | |||||||||||||||||||||| |||||| |||| |||  |||| | |  |||||||| |    
T  32695395 taggcttatttgattcattggtccctcaaataatttcaagttttcattttggtctcacaattaataaaacgtacgtttaagtccttcacgttttcctctg 32695296  T
Q  338 tttgccgaataaatcccgacggttaactttaa-cccaaattatgtctatggtggaccaatcttaaaagtggtccaccata 416  Q
    |||||| ||| | ||| ||| ||||| ||||| ||||||| |||||||||||| ||||||||||| | ||||||||||||    
T  32695295 tttgccaaattagtcctgaccgttaagtttaaccccaaatgatgtctatggtgaaccaatcttaagattggtccaccata 32695216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 237 - 411
Target Start/End: Complemental strand, 42100227 - 42100055
Alignment:
Q  237 ttaggcttattagatccgttggtccctcaattaatctccatttttcattttggtctcacaattgataaaaagtaccttttggtcccttagattttcctcc 336  Q
    ||||||||||||||||  ||| ||||| | ||||| ||   |||||||||||||||||||||| |||||||   | ||||| ||||| | ||||||||||    
T  42100227 ttaggcttattagatcgtttgatcccttatttaatttcatgttttcattttggtctcacaattaataaaaatggcgttttgatccctcatattttcctcc 42100128  T
Q  337 gtttgccgaataaatcccgacggttaactttaacccaaattatgtctatggtggaccaatcttaaaagtggtcca 411  Q
    ||||||| ||||| ||||||| ||||||||||||   ||  |||||| ||||||||||| |||||||||||||||    
T  42100127 gtttgccaaataattcccgactgttaactttaacttcaa--atgtctttggtggaccaaccttaaaagtggtcca 42100055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 278 - 413
Target Start/End: Original strand, 42870849 - 42870985
Alignment:
Q  278 ttttcattttggtctcacaattgataaaaagtaccttttggtcccttagattttcctccgtttgccgaataaatcccgacggttaactttaa-cccaaat 376  Q
    |||||||||||||| ||||||| |||||| |||| |||| ||||||||  ||||| || ||||||||||| ||||| ||| ||||| ||||| ||||||     
T  42870849 ttttcattttggtcccacaattaataaaacgtacgttttagtcccttactttttcgtctgtttgccgaatgaatcctgactgttaagtttaaccccaaaa 42870948  T
Q  377 tatgtctatggtggaccaatcttaaaagtggtccacc 413  Q
     |||||||| ||||||||||||||| |||||||||||    
T  42870949 gatgtctattgtggaccaatcttaagagtggtccacc 42870985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 256 - 391
Target Start/End: Original strand, 4810483 - 4810619
Alignment:
Q  256 tggtccctcaattaatctccatttttcattttggtctcacaattgataaaaagtaccttttggtcccttagattttcctccgtttgccgaataaatcccg 355  Q
    ||||||||||| || | || | |||| ||||||||| || |||| |||||| |||  ||||||||| | | ||||| ||||||||||| |||||||||||    
T  4810483 tggtccctcaaatactttcaaatttttattttggtcccataattaataaaacgtatgttttggtccttcaaatttttctccgtttgccaaataaatcccg 4810582  T
Q  356 acggttaactttaa-cccaaattatgtctatggtgga 391  Q
    |||||||||||||| ||||||| ||||||||||||||    
T  4810583 acggttaactttaaccccaaatgatgtctatggtgga 4810619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 239 - 416
Target Start/End: Complemental strand, 13117752 - 13117575
Alignment:
Q  239 aggcttattagatccgttggtccctcaattaatctccatttttcattttggtctcacaattgataaaaagtaccttttggtcccttagattttcctccgt 338  Q
    ||||||||||||||  ||||||||| | ||||| ||   |||||||||||||| || |||| |||||||   | |||| |||||| | ||||||||| ||    
T  13117752 aggcttattagatcgtttggtcccttatttaatttcatgttttcattttggtcccataattaataaaaatggcgttttagtccctcacattttcctctgt 13117653  T
Q  339 ttgccgaataaatcccgacggttaactttaacccaaattatgtctatggtggaccaatcttaaaagtggtccaccata 416  Q
    ||||| |||||||||||||  | || |||||||||||| || | ||| |||||||||  |||||||||||||| ||||    
T  13117652 ttgccaaataaatcccgaccatcaagtttaacccaaatgatctatatagtggaccaactttaaaagtggtccatcata 13117575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 417 - 514
Target Start/End: Original strand, 26696709 - 26696805
Alignment:
Q  417 atcttttttattaaaagatgattgttagatcatgcatgtctagtgtatcttccagtgagtcaacaacacttaaccctttttcccatttcttcatcttc 514  Q
    |||||||||||||||||| ||| ||||||| ||||||||||| |||||||||| ||||||||||||| |||||   ||||| ||||||||||||||||    
T  26696709 atcttttttattaaaagaggatcgttagattatgcatgtctactgtatcttcc-gtgagtcaacaacgcttaatttttttttccatttcttcatcttc 26696805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 237 - 416
Target Start/End: Original strand, 42098558 - 42098737
Alignment:
Q  237 ttaggcttattagatccgttggtccctcaattaatctccatttttcattttggtctcacaattgataaaaagtaccttttggtcccttagattttcctcc 336  Q
    ||||||||||||||||  ||||||||| | ||||| ||   |||||||||||||| ||||||| ||||||    | ||||| ||||  |  |||  ||||    
T  42098558 ttaggcttattagatcgtttggtcccttatttaatttcatgttttcattttggtcccacaattaataaaagtggcgttttgatcccccacgtttgtctcc 42098657  T
Q  337 gtttgccgaataaatcccgacggttaactttaaccc-aaattatgtctatggtggaccaatcttaaaagtggtccaccata 416  Q
    ||||||| ||||||||| ||| ||||| |||||||| |||| |||||| ||||||||||| ||||||||||||||||||||    
T  42098658 gtttgccaaataaatcc-gactgttaattttaaccccaaatgatgtctttggtggaccaaccttaaaagtggtccaccata 42098737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 238 - 411
Target Start/End: Original strand, 13116326 - 13116497
Alignment:
Q  238 taggcttattagatccgttggtccctcaattaatctccatttttcattttggtctcacaattgataaaaagtaccttttggtcccttagattttcctccg 337  Q
    |||||||||||||||  ||||||||| | ||||| ||   |||||||||||||| ||||||| ||||||    | |||| |||| | | |||||||||||    
T  13116326 taggcttattagatcgtttggtcccttatttaatttcatgttttcattttggtcccacaattaataaaagtggcgttttagtccttcacattttcctccg 13116425  T
Q  338 tttgccgaataaatcccgacggttaactttaacccaaattatgtctatggtggaccaatcttaaaagtggtcca 411  Q
    |||||| ||||||||||||| |||||||||||| | ||  ||||||||  | |||||||||| | |||||||||    
T  13116426 tttgccaaataaatcccgactgttaactttaactccaa--atgtctataatagaccaatcttcagagtggtcca 13116497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 278 - 407
Target Start/End: Original strand, 32693866 - 32693993
Alignment:
Q  278 ttttcattttggtctcacaattgataaaaagtaccttttggtcccttagattttcctccgtttgccgaataaatcccgacggttaactttaacccaaatt 377  Q
    |||||||||||||| ||||||| ||||||  |||  |||||||| | ||||||||||||||||||| |||||||||| || ||||||||||||   ||      
T  32693866 ttttcattttggtcccacaattaataaaacatacgctttggtccttcagattttcctccgtttgccaaataaatcccaacagttaactttaactttaa-- 32693963  T
Q  378 atgtctatggtggaccaatcttaaaagtgg 407  Q
    |||| |||| |||||||| |||||||||||    
T  32693964 atgtatatgatggaccaaccttaaaagtgg 32693993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 278 - 409
Target Start/End: Original strand, 45279716 - 45279845
Alignment:
Q  278 ttttcattttggtctcacaattgataaaaagtaccttttggtcccttagattttcctccgtttgccgaataaatcccgacggttaactttaacccaaatt 377  Q
    |||||||||| |||  |||||| |||||| |||| ||||||||||| |  ||||  | |||||| | |||||||||||||||||||||||||| | ||      
T  45279716 ttttcattttagtcatacaattaataaaacgtacgttttggtccctcaagttttttttcgtttggcaaataaatcccgacggttaactttaactctaa-- 45279813  T
Q  378 atgtctatggtggaccaatcttaaaagtggtc 409  Q
    |||| |||||||||||| ||||||||||||||    
T  45279814 atgtatatggtggaccagtcttaaaagtggtc 45279845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 278 - 408
Target Start/End: Original strand, 41629744 - 41629872
Alignment:
Q  278 ttttcattttggtctcacaattgataaaaagtaccttttggtcccttagattttcctccgtttgccgaataaatcccgacggttaactttaacccaaatt 377  Q
    |||| ||||||||||||||||| |||||| |||  ||||| ||||| |  ||||| |||||||||| ||||||||||||| |||||||| ||| | ||      
T  41629744 tttttattttggtctcacaattaataaaacgtatattttgatccctcaagttttcttccgtttgccaaataaatcccgaccgttaacttgaactccaa-- 41629841  T
Q  378 atgtctatggtggaccaatcttaaaagtggt 408  Q
    | |||||||||| ||||| ||||||||||||    
T  41629842 aagtctatggtgaaccaaccttaaaagtggt 41629872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 238 - 416
Target Start/End: Complemental strand, 42872309 - 42872133
Alignment:
Q  238 taggcttattagatccgttggtccctcaattaatctccatttttcattttggtctcacaattgataaaaagtaccttttggtcccttagattttcctccg 337  Q
    |||||||||| |||||  |||||||| || |||| |  | ||||||||||  ||||| |||  |||||| |||| |||| |||| | |  ||||||||||    
T  42872309 taggcttatttgatccaatggtcccttaaataattttaagttttcattttaatctcataatgaataaaacgtacgttttagtccttcactttttcctccg 42872210  T
Q  338 tttgccgaataaatcccgacggttaactttaacccaaattatgtctatggtggaccaatcttaaaagtggtccaccata 416  Q
    |||| | ||||||||| |||||||||||||||||  ||  ||||||||||| |||||| ||||| ||||||| ||||||    
T  42872209 tttgtcaaataaatcctgacggttaactttaacctcaa--atgtctatggtagaccaaccttaagagtggtctaccata 42872133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 417 - 519
Target Start/End: Original strand, 4810673 - 4810774
Alignment:
Q  417 atcttttttattaaaagatgattgttagatcatgcatgtctagtgtatcttccagtgagtcaacaacacttaaccctttttcccatttcttcatcttcat 516  Q
    |||||||||||||||||| ||| |||||||||| ||| |||| ||||||||||  ||||||||||||||||||   ||||||| ||||| |||||||| |    
T  4810673 atcttttttattaaaagaggatcgttagatcatacatatctattgtatcttcc-ttgagtcaacaacacttaattttttttcctatttcatcatcttctt 4810771  T
Q  517 ccc 519  Q
    |||    
T  4810772 ccc 4810774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 236 - 352
Target Start/End: Original strand, 28418800 - 28418916
Alignment:
Q  236 tttaggcttattagatccgttggtccctcaattaatctccatttttcattttggtctcacaattgataaaaagtaccttttggtcccttagattttcctc 335  Q
    |||||||||| ||||||| ||||||||| || |||| || |||||||||||||||| || |||| ||||||   || |||| |||||| |  ||||||||    
T  28418800 tttaggcttaatagatccattggtcccttaaataatttcaatttttcattttggtcccataattaataaaacacacgttttagtccctcactttttcctc 28418899  T
Q  336 cgtttgccgaataaatc 352  Q
    |||||||| ||||||||    
T  28418900 cgtttgccaaataaatc 28418916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 278 - 416
Target Start/End: Complemental strand, 8571697 - 8571559
Alignment:
Q  278 ttttcattttggtctcacaattgataaaaagtaccttttggtcccttagattttcctccgtttgccgaataaatccc--gacggttaactttaacccaaa 375  Q
    ||||||||||||||  |||||| |||||| |||| ||||||||| | |  |||| |||||||| || ||||||||||  | | ||||| |||||||| ||    
T  8571697 ttttcattttggtcatacaattaataaaacgtacgttttggtccttcatttttttctccgtttaccaaataaatccctagtctgttaagtttaaccccaa 8571598  T
Q  376 ttatgtctatggtggaccaatcttaaaagtggtccaccata 416  Q
      ||||||||||||||||||  |||||| ||||||||||||    
T  8571597 --atgtctatggtggaccaactttaaaaatggtccaccata 8571559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 257 - 417
Target Start/End: Original strand, 22551022 - 22551180
Alignment:
Q  257 ggtccctcaattaatctccatttttcattttggtctcacaattgataaaaagtaccttttggtcccttagattttcctccgtttgccgaataaatcc-cg 355  Q
    |||||||||| |||| || | |||| ||||||||| ||||||| |||||| ||| |||||||||||| |  |||| |||| |||||| |||||||||  |    
T  22551022 ggtccctcaaataatttcaagtttttattttggtcccacaattaataaaacgtatcttttggtccctca-ctttttctccatttgccaaataaatcctgg 22551120  T
Q  356 acggttaactttaacccaaattatgtctatggtggaccaatcttaaaagtggtccaccataa 417  Q
    |  ||||| |||||||| ||  || |||||||||||| || |||||||||| ||||||||||    
T  22551121 attgttaagtttaaccccaa--atctctatggtggacaaaccttaaaagtgatccaccataa 22551180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 235 - 353
Target Start/End: Original strand, 26696525 - 26696643
Alignment:
Q  235 ttttaggcttattagatccgttggtccctcaattaatctccatttttcattttggtctcacaattgataaaaagtaccttttggtcccttagattttcct 334  Q
    ||||||||||||| ||| |  |||||||  ||||||| || | |||||||||||||| ||||||| ||||||  ||| ||||||||||| |  |||||||    
T  26696525 ttttaggcttatttgattcaatggtcccctaattaatttcaagttttcattttggtcccacaattaataaaacatacattttggtccctcactttttcct 26696624  T
Q  335 ccgtttgccgaataaatcc 353  Q
    || |||||| |||||||||    
T  26696625 ccatttgccaaataaatcc 26696643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 345 - 416
Target Start/End: Original strand, 42877722 - 42877791
Alignment:
Q  345 aataaatcccgacggttaactttaacccaaattatgtctatggtggaccaatcttaaaagtggtccaccata 416  Q
    |||||||||||||||||||||||||||| ||  |||| ||||||||||||| ||||| | ||||||||||||    
T  42877722 aataaatcccgacggttaactttaaccccaa--atgtgtatggtggaccaaccttaagaatggtccaccata 42877791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 239 - 370
Target Start/End: Complemental strand, 17339668 - 17339537
Alignment:
Q  239 aggcttattagatccgttggtccctcaattaatctccatttttcattttggtctcacaattgataaaaagtaccttttggtcccttagattttcctccgt 338  Q
    ||||||||||||||  ||||||||| | ||||| ||   ||||||||||||||  |||||| |||||||   | |||| |||||| |  |||||||||||    
T  17339668 aggcttattagatcgtttggtcccttatttaatttcatattttcattttggtccaacaattaataaaaatggcattttagtccctcacgttttcctccgt 17339569  T
Q  339 ttgccgaataaatcccgacggttaactttaac 370  Q
    ||||| ||||||||| ||| ||||| ||||||    
T  17339568 ttgccaaataaatcctgactgttaagtttaac 17339537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 239 - 352
Target Start/End: Complemental strand, 28420293 - 28420180
Alignment:
Q  239 aggcttattagatccgttggtccctcaattaatctccatttttcattttggtctcacaattgataaaaagtaccttttggtcccttagattttcctccgt 338  Q
    ||||||| ||||||| ||||||||| || |||| || |||||||||||||||| || |||| ||||||   || |||| |||||| |  |||||||||||    
T  28420293 aggcttaatagatccattggtcccttaaataatttcaatttttcattttggtcccataattaataaaacacacgttttagtccctcattttttcctccgt 28420194  T
Q  339 ttgccgaataaatc 352  Q
    ||| | ||||||||    
T  28420193 ttgtcaaataaatc 28420180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 240 - 349
Target Start/End: Original strand, 32797136 - 32797245
Alignment:
Q  240 ggcttattagatccgttggtccctcaattaatctccatttttcattttggtctcacaattgataaaaagtaccttttggtcccttagattttcctccgtt 339  Q
    |||||||| ||||  ||||||||| || |||| || | |||||||||||||| ||||||| |||||| |||| |||  |||||| || ||||||||||||    
T  32797136 ggcttatttgatctattggtcccttaaataatttcaagttttcattttggtcccacaattaataaaacgtacgtttaagtccctcaggttttcctccgtt 32797235  T
Q  340 tgccgaataa 349  Q
    | || |||||    
T  32797236 taccaaataa 32797245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 278 - 417
Target Start/End: Original strand, 30786712 - 30786851
Alignment:
Q  278 ttttcattttggtctcacaattgataaaaagtaccttttggtcccttagattttcctccgtttgccgaataaatcccgacggttaacttt--aacccaaa 375  Q
    ||||||||||| || || |||| |||||| |||  ||||| ||||| |  |||| ||||||||||| ||||||| ||||| |||||||||  ||| | ||    
T  30786712 ttttcattttgatcacataattaataaaacgtatattttgatccctcacttttttctccgtttgccaaataaattccgactgttaactttttaactctaa 30786811  T
Q  376 ttatgtctatggtggaccaatcttaaaagtggtccaccataa 417  Q
      |||||||||||||| |||  |||||||||||||| |||||    
T  30786812 --atgtctatggtggatcaactttaaaagtggtccatcataa 30786851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 359 - 416
Target Start/End: Complemental strand, 24192661 - 24192606
Alignment:
Q  359 gttaactttaacccaaattatgtctatggtggaccaatcttaaaagtggtccaccata 416  Q
    |||||||||||||| ||  |||||||||||||||||| ||||| ||||||||||||||    
T  24192661 gttaactttaaccctaa--atgtctatggtggaccaaccttaagagtggtccaccata 24192606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 417 - 467
Target Start/End: Complemental strand, 34504583 - 34504533
Alignment:
Q  417 atcttttttattaaaagatgattgttagatcatgcatgtctagtgtatctt 467  Q
    |||||||||||||||||| ||| ||||||||||||||||||| | ||||||    
T  34504583 atcttttttattaaaagaggatcgttagatcatgcatgtctactatatctt 34504533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 239 - 352
Target Start/End: Original strand, 17338038 - 17338151
Alignment:
Q  239 aggcttattagatccgttggtccctcaattaatctccatttttcattttggtctcacaattgataaaaagtaccttttggtcccttagattttcctccgt 338  Q
    |||||||||| |||  ||||||||| | ||||| ||   |||||||||||||| ||||||| |||||||   | |||| |||||| | ||||| ||||||    
T  17338038 aggcttattaaatcgtttggtcccttatttaatttcatgttttcattttggtcccacaattaataaaaatggcgttttagtccctcacatttttctccgt 17338137  T
Q  339 ttgccgaataaatc 352  Q
    ||||| ||||||||    
T  17338138 ttgccaaataaatc 17338151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 417 - 484
Target Start/End: Complemental strand, 416480 - 416413
Alignment:
Q  417 atcttttttattaaaagatgattgttagatcatgcatgtctagtgtatcttccagtgagtcaacaaca 484  Q
    |||||||||| ||||  ||||||||||||||||||||||| | |||||||| | ||||  ||||||||    
T  416480 atcttttttaataaagaatgattgttagatcatgcatgtccactgtatcttactgtgaaccaacaaca 416413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #31
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 444 - 519
Target Start/End: Original strand, 41742297 - 41742372
Alignment:
Q  444 gatcatgcatgtctagtgtatcttccagtgagtcaacaacacttaaccctttttcccatttcttcatcttcatccc 519  Q
    ||||||||| ||||| ||||||||||| ||| ||| ||||||||||   ||||| ||||||||| |||||| ||||    
T  41742297 gatcatgcaagtctattgtatcttccaatgaatcatcaacacttaatttttttttccatttcttgatcttcttccc 41742372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #32
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 278 - 352
Target Start/End: Original strand, 6397819 - 6397893
Alignment:
Q  278 ttttcattttggtctcacaattgataaaaagtaccttttggtcccttagattttcctccgtttgccgaataaatc 352  Q
    |||||||||||||| ||||||| ||||||  ||| |||| |||||| |  |||| ||||||||||| ||||||||    
T  6397819 ttttcattttggtcccacaattaataaaacttacattttagtccctcatttttttctccgtttgccaaataaatc 6397893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #33
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 240 - 354
Target Start/End: Original strand, 8570116 - 8570230
Alignment:
Q  240 ggcttattagatccgttggtccctcaattaatctccatttttcattttggtctcacaattgataaaaagtaccttttggtcccttagattttcctccgtt 339  Q
    |||||||| |||||  |||||||  ||||||| ||   ||||||||||||||  |||||| |||||| |||| ||||||||||| |  |||  ||| |||    
T  8570116 ggcttatttgatccaatggtcccctaattaatttcacgttttcattttggtcctacaattaataaaacgtacgttttggtccctcacttttgtctctgtt 8570215  T
Q  340 tgccgaataaatccc 354  Q
    |||| ||||||||||    
T  8570216 tgccaaataaatccc 8570230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #34
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 378 - 416
Target Start/End: Original strand, 38696443 - 38696481
Alignment:
Q  378 atgtctatggtggaccaatcttaaaagtggtccaccata 416  Q
    ||||||||||| |||||| ||||||||||||||||||||    
T  38696443 atgtctatggtagaccaaccttaaaagtggtccaccata 38696481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #35
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 241 - 354
Target Start/End: Original strand, 211594 - 211707
Alignment:
Q  241 gcttattagatccgttggtccctcaattaatctccatttttcattttggtctcacaattgataaaaagtaccttttggtcccttagattttcctccgttt 340  Q
    ||||||||||||  ||| ||||| || |||| ||   |||||||||||||| ||||||| ||||||   || |||| ||||||||  |||| ||||||||    
T  211594 gcttattagatcatttgatcccttaaataatttcatgttttcattttggtcccacaattaataaaacagacgttttagtcccttaattttttctccgttt 211693  T
Q  341 gccgaataaatccc 354  Q
     || ||||||||||    
T  211694 accaaataaatccc 211707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #36
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 241 - 354
Target Start/End: Complemental strand, 240662 - 240549
Alignment:
Q  241 gcttattagatccgttggtccctcaattaatctccatttttcattttggtctcacaattgataaaaagtaccttttggtcccttagattttcctccgttt 340  Q
    ||||||||||||  ||| ||||| || |||| ||   |||||||||||||| ||||||| ||||||   || |||| ||||||||  |||| ||||||||    
T  240662 gcttattagatcatttgatcccttaaataatttcatgttttcattttggtcccacaattaataaaacagacgttttagtcccttaattttttctccgttt 240563  T
Q  341 gccgaataaatccc 354  Q
     || ||||||||||    
T  240562 accaaataaatccc 240549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #37
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 241 - 354
Target Start/End: Original strand, 725217 - 725330
Alignment:
Q  241 gcttattagatccgttggtccctcaattaatctccatttttcattttggtctcacaattgataaaaagtaccttttggtcccttagattttcctccgttt 340  Q
    ||||||||||||  ||| ||||| || |||| ||   |||||||||||||| ||||||| ||||||   || |||| ||||||||  |||| ||||||||    
T  725217 gcttattagatcatttgatcccttaaataatttcatgttttcattttggtcccacaattaataaaacagacgttttagtcccttaattttttctccgttt 725316  T
Q  341 gccgaataaatccc 354  Q
     || ||||||||||    
T  725317 accaaataaatccc 725330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #38
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 241 - 354
Target Start/End: Complemental strand, 794017 - 793904
Alignment:
Q  241 gcttattagatccgttggtccctcaattaatctccatttttcattttggtctcacaattgataaaaagtaccttttggtcccttagattttcctccgttt 340  Q
    ||||||||||||  ||| ||||| || |||| ||   |||||||||||||| ||||||| ||||||   || |||| ||||||||  |||| ||||||||    
T  794017 gcttattagatcatttgatcccttaaataatttcatgttttcattttggtcccacaattaataaaacagacgttttagtcccttaattttttctccgttt 793918  T
Q  341 gccgaataaatccc 354  Q
     || ||||||||||    
T  793917 accaaataaatccc 793904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #39
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 275 - 395
Target Start/End: Complemental strand, 26697915 - 26697797
Alignment:
Q  275 catttttcattttggtctcacaattgataaaaagtaccttttggtcccttagattttcctccgtttgccgaataaatcccgacggttaactttaacccaa 374  Q
    ||||||||||||| ||| || |||| |||||| |||| |||| |||||| |  ||||| ||| |||| |||||||||||  |  ||||| |||||||| |    
T  26697915 catttttcattttagtcccataattaataaaacgtacgttttagtccctcactttttcttccttttgtcgaataaatcctaattgttaagtttaacccca 26697816  T
Q  375 attatgtctatggtggaccaa 395  Q
    |  |||| |||||||||||||    
T  26697815 a--atgtttatggtggaccaa 26697797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #40
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 356 - 416
Target Start/End: Complemental strand, 31845795 - 31845738
Alignment:
Q  356 acggttaactttaacccaaattatgtctatggtggaccaatcttaaaagtggtccaccata 416  Q
    ||||||||||||||||| ||  |||||||||||| ||||| ||||| ||||||||||||||    
T  31845795 acggttaactttaaccccaa--atgtctatggtgaaccaa-cttaagagtggtccaccata 31845738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #41
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 238 - 291
Target Start/End: Complemental strand, 38697126 - 38697073
Alignment:
Q  238 taggcttattagatccgttggtccctcaattaatctccatttttcattttggtc 291  Q
    |||||||| ||| ||  ||||||||||||||||| |||| ||||||||||||||    
T  38697126 taggcttaatagctcatttggtccctcaattaatttccagttttcattttggtc 38697073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #42
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 276 - 372
Target Start/End: Complemental strand, 6398579 - 6398483
Alignment:
Q  276 atttttcattttggtctcacaattgataaaaagtaccttttggtcccttagattttcctccgtttgccgaataaatcccgacggttaactttaaccc 372  Q
    ||||||||||||||||||| |||| ||||||    | |||| |||||| |  |||||||||||||| | ||||||||  ||| ||||| ||||||||    
T  6398579 atttttcattttggtctcataattaataaaacaagcgttttagtccctcattttttcctccgtttgtcaaataaatcatgactgttaagtttaaccc 6398483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #43
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 278 - 370
Target Start/End: Complemental strand, 30787680 - 30787588
Alignment:
Q  278 ttttcattttggtctcacaattgataaaaagtaccttttggtcccttagattttcctccgtttgccgaataaatcccgacggttaactttaac 370  Q
    |||||||||||||| || |||| ||||||  ||  ||||||||||| |  ||||| |||||||||| ||||||||| |   ||||||||||||    
T  30787680 ttttcattttggtcccataattaataaaatatatattttggtccctcactttttcttccgtttgccaaataaatcctgtatgttaactttaac 30787588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 77; Significance: 2e-35; HSPs: 49)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 418 - 521
Target Start/End: Complemental strand, 15449982 - 15449878
Alignment:
Q  418 tcttttttattaaaagatgattgttagatcatgcatgtctagtgtatcttccagtgagtcaacaacacttaaccctttt-tcccatttcttcatcttcat 516  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||| ||||||||  |||| ||||||||||||||||||||    
T  15449982 tcttttttattaaaagatgatcgttagatcatgcatgtctagtgtatcttccggtgagtcaacatcacttaacatttttatcccatttcttcatcttcat 15449883  T
Q  517 ccctc 521  Q
    |||||    
T  15449882 ccctc 15449878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 256 - 416
Target Start/End: Original strand, 52239891 - 52240051
Alignment:
Q  256 tggtccctcaattaatctccatttttcattttggtctcacaattgataaaaagtaccttttggtcccttagattttcctccgtttgccgaataaatcccg 355  Q
    ||||||||||| |||| || | |||| |||||| || ||||||| |||||| |||| ||||||| | | || |||| ||||||||||| ||||||| ||     
T  52239891 tggtccctcaaataatttcaaatttttattttgatcccacaattaataaaacgtacgttttggttcttcaggtttttctccgtttgccaaataaattcca 52239990  T
Q  356 acggttaactttaacccaaattatgtctatggtggaccaatcttaaaagtggtccaccata 416  Q
    | ||||||||||||||||||| |||||||||||||||||| ||||| ||||||||||||||    
T  52239991 agggttaactttaacccaaatgatgtctatggtggaccaaccttaagagtggtccaccata 52240051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 239 - 416
Target Start/End: Complemental strand, 2312601 - 2312423
Alignment:
Q  239 aggcttattagatccgttggtccctcaattaatctccatttttcattttggtctcacaattgataaaaagtaccttttggtcccttagattttcctccgt 338  Q
    ||||||||| ||||| ||||||||| |  |||| || | ||| |||||| ||| ||||||| |||||| |||| |||  |||||| |  |||||||||||    
T  2312601 aggcttatttgatccattggtcccttagataatttcaagtttccattttagtcccacaattaataaaacgtacgtttaagtccctcactttttcctccgt 2312502  T
Q  339 ttgccgaataaatcccgacggttaactttaaccc-aaattatgtctatggtggaccaatcttaaaagtggtccaccata 416  Q
    ||||| ||||||||  ||| ||||| |||||||| |||| |||||||||||||||||||||||||||||||||||||||    
T  2312501 ttgccaaataaatcatgaccgttaagtttaaccccaaatgatgtctatggtggaccaatcttaaaagtggtccaccata 2312423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 238 - 416
Target Start/End: Original strand, 11968507 - 11968685
Alignment:
Q  238 taggcttattagatccgttggtccctcaattaatctccatttttcattttggtctcacaattgataaaaagtaccttttggtcccttagattttcctccg 337  Q
    |||||||||| ||||   |||| |||||| |||| || | |||||||||||||||||||||| ||||||  ||| ||||||||||| ||||||| |||||    
T  11968507 taggcttatttgatcttatggttcctcaaataatttcaagttttcattttggtctcacaattaataaaacatactttttggtccctcagattttgctccg 11968606  T
Q  338 tttgccgaataaatcccgacggttaactttaacccaaattatgtctatggtggaccaatcttaaaagtggtccaccata 416  Q
    ||||   ||||||| ||| | || ||||||||| || |||||||||||| |||||||| ||||| ||||||||| ||||    
T  11968607 tttgtaaaataaattccggctgtcaactttaactcagattatgtctatgatggaccaaccttaagagtggtccatcata 11968685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 256 - 416
Target Start/End: Original strand, 1794425 - 1794586
Alignment:
Q  256 tggtccctcaattaatctccatttttcattttggtctcacaattgataaaaagtaccttttggtcccttagattttcctccgtttgccgaataaatcccg 355  Q
    ||||||||||| |||| || | ||||||||||| |||||||||| ||||||  ||||||||| ||||| |  |||||||| ||||| | |||||||||      
T  1794425 tggtccctcaaataatttcaagttttcattttgatctcacaattaataaaatataccttttgatccctcactttttcctctgtttgtcaaataaatccta 1794524  T
Q  356 acggttaactttaa-cccaaattatgtctatggtggaccaatcttaaaagtggtccaccata 416  Q
    |||||||| ||||| ||||||| |||| ||||||||||||| ||||| ||||||||||||||    
T  1794525 acggttaagtttaatcccaaatgatgtatatggtggaccaaccttaagagtggtccaccata 1794586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 256 - 416
Target Start/End: Complemental strand, 6349655 - 6349494
Alignment:
Q  256 tggtccctcaattaatctccatttttcattttggtctcacaattgataaaaagtaccttttggtcccttagattttcctccgtttgccgaataaatcccg 355  Q
    ||||||||||| |||| || | |||||||||||||| ||||||| |||||| |||||||||||||||| |  ||||| ||||||| || |||| ||||||    
T  6349655 tggtccctcaaataatttcaagttttcattttggtcccacaattaataaaacgtaccttttggtccctcaccttttcttccgtttaccaaatagatcccg 6349556  T
Q  356 acggttaactttaa-cccaaattatgtctatggtggaccaatcttaaaagtggtccaccata 416  Q
    |  ||||| ||||| ||||||| |||| ||||||||| ||| ||||| ||||||||||||||    
T  6349555 aacgttaagtttaaccccaaatgatgtatatggtggatcaaccttaagagtggtccaccata 6349494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 420 - 533
Target Start/End: Original strand, 52240089 - 52240202
Alignment:
Q  420 ttttttattaaaagatgattgttagatcatgcatgtctagtgtatcttccagtgagtcaacaacacttaaccctttttcccatttcttcatcttcatccc 519  Q
    ||||||||||||||||    |||| ||||||||||||||  ||||||||||||||| |||||| |||||||  ||||||||||||| |||||||||||||    
T  52240089 ttttttattaaaagatagccgttatatcatgcatgtctaccgtatcttccagtgagccaacaatacttaactttttttcccatttcatcatcttcatccc 52240188  T
Q  520 tctcatcttcatca 533  Q
    ||||||||||||||    
T  52240189 tctcatcttcatca 52240202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 233 - 411
Target Start/End: Complemental strand, 393763 - 393586
Alignment:
Q  233 ttttttaggcttattagatccgttggtccctcaattaatctccatttttcattttggtctcacaattgataaaaagtaccttttggtcccttagattttc 332  Q
    |||||| |||||||| |||||   |||||||||| |||| || | |||||||||||||| ||||||| |||||||||| |||||||||||| |  ||||     
T  393763 tttttttggcttatttgatccaacggtccctcaaataatttcaaattttcattttggtcccacaattaataaaaagtatcttttggtccctcactttttt 393664  T
Q  333 ctccgtttgccgaataaatccc-gacggttaactttaacccaaattatgtctatggtggaccaatcttaaaagtggtcca 411  Q
    ||||||||||| |||||||||| ||| |||||||||||  | ||  |||| ||| ||||||||| |||||||||||||||    
T  393663 ctccgtttgccaaataaatcccggactgttaactttaattctaa--atgtttatagtggaccaaccttaaaagtggtcca 393586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 236 - 413
Target Start/End: Original strand, 6348149 - 6348324
Alignment:
Q  236 tttaggcttattagatccgttggtccctcaattaatctccatttttcattttggtctcacaattgataaaaagtaccttttggtcccttagattttcctc 335  Q
    |||||||||||| ||||   ||||||||||| |||| || | |||||||||||||| ||||||| |||||| |||||||||||| ||| |  ||||||||    
T  6348149 tttaggcttatttgatcaaatggtccctcaaataatttcaagttttcattttggtcccacaattaataaaacgtaccttttggttcctcactttttcctc 6348248  T
Q  336 cgtttgccgaataaatcccgacggttaactttaacccaaattatgtctatggtggaccaatcttaaaagtggtccacc 413  Q
     ||||| | ||||||| | || |||||| |||||||  ||  |||||||||||||||||| ||||| |||||||||||    
T  6348249 tgtttgtcaaataaattctgatggttaagtttaacctcaa--atgtctatggtggaccaaccttaagagtggtccacc 6348324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 238 - 367
Target Start/End: Original strand, 1587178 - 1587307
Alignment:
Q  238 taggcttattagatccgttggtccctcaattaatctccatttttcattttggtctcacaattgataaaaagtaccttttggtcccttagattttcctccg 337  Q
    |||||||||| |||||   |||||||||| |||| |  | |||||||||| ||||||||||| |||||| |||||||||||||||| |  ||||||||||    
T  1587178 taggcttatttgatccaacggtccctcaaataattttaaattttcattttagtctcacaattaataaaacgtaccttttggtccctcactttttcctccg 1587277  T
Q  338 tttgccgaataaatcccgacggttaacttt 367  Q
    |||||| |||||||||||| ||||||||||    
T  1587278 tttgccaaataaatcccgatggttaacttt 1587307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 236 - 416
Target Start/End: Original strand, 7707582 - 7707763
Alignment:
Q  236 tttaggcttattagatccgttggtccctcaattaatctccatttttcattttggtctcacaattgataaaaagtaccttttggtcccttagattttcctc 335  Q
    |||||| ||||||||||  || |||||| | ||||| ||   |||||||||||||| ||||||| |||||||  || |||| |||| | | |||||||||    
T  7707582 tttaggtttattagatcttttagtcccttatttaatttcatgttttcattttggtcccacaattaataaaaatgacgttttagtccatcacattttcctc 7707681  T
Q  336 cgtttgccgaataaatcccgacggttaactttaac-ccaaattatgtctatggtggaccaatcttaaaagtggtccaccata 416  Q
     ||||||| ||||||||| |||||||| ||||||| |||||| |||||| |||| |||||| ||||| ||||||||||||||    
T  7707682 tgtttgccaaataaatcctgacggttagctttaacaccaaatgatgtctttggtagaccaaccttaagagtggtccaccata 7707763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 238 - 366
Target Start/End: Original strand, 4128989 - 4129117
Alignment:
Q  238 taggcttattagatccgttggtccctcaattaatctccatttttcattttggtctcacaattgataaaaagtaccttttggtcccttagattttcctccg 337  Q
    |||||||||| |||||  |||| |||||| |||| || | |||||||||||||| ||||||| |||||| |||| |||||||||||||  |||| |||||    
T  4128989 taggcttatttgatccaatggttcctcaaataatttcaagttttcattttggtcccacaattaataaaatgtacattttggtcccttacttttttctccg 4129088  T
Q  338 tttgccgaataaatcccgacggttaactt 366  Q
    |||||| ||||||||||||| ||||||||    
T  4129089 tttgccaaataaatcccgaccgttaactt 4129117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 243 - 416
Target Start/End: Complemental strand, 27851047 - 27850880
Alignment:
Q  243 ttattagatccgttggtccctcaattaatctccatttttcattttggtctcacaattgataaaaagtaccttttggtcccttagattttcctccgtttgc 342  Q
    ||||| |||||  ||||||||||| |||| || | |||||||||||||| ||||||| |||||| |||  ||||||||||| |  |||||||||||        
T  27851047 ttatttgatccaatggtccctcaaataatttcaagttttcattttggtcccacaattaataaaacgtatattttggtccctcaatttttcctccgt---- 27850952  T
Q  343 cgaataaatcccgacggttaactttaacc-caaattatgtctatggtggaccaatcttaaaagtggtccaccata 416  Q
       ||||||||| || ||||| ||||||| ||||| |||||||||||||||||| ||||||||||||||||||||    
T  27850951 ---ataaatcccaacagttaagtttaacctcaaatgatgtctatggtggaccaaccttaaaagtggtccaccata 27850880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 237 - 370
Target Start/End: Original strand, 2310918 - 2311051
Alignment:
Q  237 ttaggcttattagatccgttggtccctcaattaatctccatttttcattttggtctcacaattgataaaaagtaccttttggtcccttagattttcctcc 336  Q
    ||||||||||| |||||  ||||||   ||||||| || | |||||||||||||| ||||||| |||||| |||| ||||||||||| ||||||||||||    
T  2310918 ttaggcttatttgatccaatggtcctctaattaatttcaagttttcattttggtcccacaattaataaaacgtacgttttggtccctcagattttcctcc 2311017  T
Q  337 gtttgccgaataaatcccgacggttaactttaac 370  Q
    | ||||| |||||||||  || ||||||||||||    
T  2311018 gattgccaaataaatcctaacagttaactttaac 2311051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 238 - 343
Target Start/End: Original strand, 24426335 - 24426440
Alignment:
Q  238 taggcttattagatccgttggtccctcaattaatctccatttttcattttggtctcacaattgataaaaagtaccttttggtcccttagattttcctccg 337  Q
    |||||||||| |||||  ||||||||||| |||| || | |||||||||||||||||||||| |||||| |||||||||||||||| |  ||||||||||    
T  24426335 taggcttatttgatccaatggtccctcaaataatttcaagttttcattttggtctcacaattaataaaacgtaccttttggtccctcactttttcctccg 24426434  T
Q  338 tttgcc 343  Q
    ||||||    
T  24426435 tttgcc 24426440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 278 - 409
Target Start/End: Original strand, 40792787 - 40792914
Alignment:
Q  278 ttttcattttggtctcacaattgataaaaagtaccttttggtcccttagattttcctccgtttgccgaataaatcccgacggttaactttaacccaaatt 377  Q
    |||||||||||||| ||||||| ||||||  ||| ||||||||||| ||||||| ||||||||||| ||||||||||||  ||||||||||||   ||      
T  40792787 ttttcattttggtcccacaattaataaaacatacattttggtccctcagatttttctccgtttgccaaataaatcccga--gttaactttaactttaa-- 40792882  T
Q  378 atgtctatggtggaccaatcttaaaagtggtc 409  Q
    |||||||| ||||||||| |||||||||||||    
T  40792883 atgtctatagtggaccaaccttaaaagtggtc 40792914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 417 - 489
Target Start/End: Original strand, 7053384 - 7053456
Alignment:
Q  417 atcttttttattaaaagatgattgttagatcatgcatgtctagtgtatcttccagtgagtcaacaacacttaa 489  Q
    |||||||||||||||||| ||| ||||||||||||||||||| |||||||| |||||||||||||||||||||    
T  7053384 atcttttttattaaaagaggatcgttagatcatgcatgtctactgtatctttcagtgagtcaacaacacttaa 7053456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 278 - 416
Target Start/End: Original strand, 52963605 - 52963741
Alignment:
Q  278 ttttcattttggtctcacaattgataaaaagtaccttttggtcccttagattttcctccgtttgccgaataaatcccgacggttaactttaacccaaatt 377  Q
    |||||||||||||||||||||| |||||  |||  ||||||||||| |  |||| ||||||||| | |||||||| |||| |||||||||||| | ||      
T  52963605 ttttcattttggtctcacaattaataaatcgtatgttttggtccctcaagtttttctccgtttgtcaaataaatctcgactgttaactttaactccaa-- 52963702  T
Q  378 atgtctatggtggaccaatcttaaaagtggtccaccata 416  Q
    |||||||||||||||||  ||||||||||||||| ||||    
T  52963703 atgtctatggtggaccagccttaaaagtggtccatcata 52963741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 240 - 395
Target Start/End: Original strand, 1188841 - 1188995
Alignment:
Q  240 ggcttattagatccgttggtccctcaattaatctccatttttcattttggtctcacaattgataaaaagtaccttttggtcccttagattttcctccgtt 339  Q
    |||||||| |||||  | ||||||||| |||| || | |||| ||||||||| ||||||| |||||| |||| ||||||||||| |  ||||||||||||    
T  1188841 ggcttatttgatccaatagtccctcaaataatttcaagtttttattttggtcccacaattaataaaacgtacattttggtccctcactttttcctccgtt 1188940  T
Q  340 tgccgaataaatcccgacggttaac-tttaacccaaattatgtctatggtggaccaa 395  Q
    |||| ||||||||||||  |||||| |||||||| ||  |||||||||||| |||||    
T  1188941 tgccaaataaatcccgaacgttaacttttaaccctaa--atgtctatggtgaaccaa 1188995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 234 - 372
Target Start/End: Complemental strand, 37884401 - 37884263
Alignment:
Q  234 tttttaggcttattagatccgttggtccctcaattaatctccatttttcattttggtctcacaattgataaaaagtaccttttggtcccttagattttcc 333  Q
    ||||| |||||||| ||| |  ||||||||||| |||| |  | |||||||||| ||| || |||| |||||| |||||||||||||| |||  ||||||    
T  37884401 ttttttggcttatttgattcaatggtccctcaaataattttaaattttcatttttgtcccataattaataaaatgtaccttttggtcctttactttttcc 37884302  T
Q  334 tccgtttgccgaataaatcccgacggttaactttaaccc 372  Q
    |||||||||| ||||||||| ||| ||||| ||||||||    
T  37884301 tccgtttgccaaataaatccagactgttaagtttaaccc 37884263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 257 - 411
Target Start/End: Original strand, 1829768 - 1829921
Alignment:
Q  257 ggtccctcaattaatctccatttttcattttggtctcacaattgataaaaagtaccttttggtcccttagattttcctccgtttgccgaataaatcccga 356  Q
    |||||||||| |||| || | |||||||||||||| ||||||| |||||| ||| ||||| |||||| |  ||||||| |||||| | ||||||| ||||    
T  1829768 ggtccctcaaataatttcaagttttcattttggtcccacaattaataaaacgtatcttttagtccctcactttttcctacgtttgtcaaataaattccga 1829867  T
Q  357 cggttaacttt-aacccaaattatgtctatggtggaccaatcttaaaagtggtcca 411  Q
    | ||||||||| ||| | ||  |||||||| |||||||||  ||||||||||||||    
T  1829868 ctgttaacttttaactctaa--atgtctatcgtggaccaactttaaaagtggtcca 1829921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 256 - 352
Target Start/End: Original strand, 37882848 - 37882944
Alignment:
Q  256 tggtccctcaattaatctccatttttcattttggtctcacaattgataaaaagtaccttttggtcccttagattttcctccgtttgccgaataaatc 352  Q
    ||||||||||| |||| || | |||||||||| ||| ||||||| |||||| |||||||||||||||| |  |||||||||||||||| ||||||||    
T  37882848 tggtccctcaaataatttcaagttttcattttagtcccacaattaataaaacgtaccttttggtccctcaccttttcctccgtttgccaaataaatc 37882944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 233 - 416
Target Start/End: Complemental strand, 42810328 - 42810146
Alignment:
Q  233 ttttttaggcttattagatccgttggtccctcaattaatctccatttttcattttggtctcacaattgataaaaagtaccttttggtcccttagattttc 332  Q
    |||||||  |||||| |||||  | |||||| || |||| || | |||||||||||||| ||||||| |||||| |||| |||  |||||| | ||||||    
T  42810328 ttttttatacttatttgatccaatagtcccttaaataatttcaacttttcattttggtcccacaattaataaaacgtacttttaagtccctcacattttc 42810229  T
Q  333 ctccgtttgccgaataaatcccgacggttaactttaacccaaattatgtctatggtggaccaatcttaaaagtggtccaccata 416  Q
    ||||||||||| |||||||||     ||||| ||||||||  |  |||||||||||| ||||||||||| ||| ||||||||||    
T  42810228 ctccgtttgccaaataaatccttggtgttaagtttaaccccca-gatgtctatggtgaaccaatcttaagagtagtccaccata 42810146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 258 - 395
Target Start/End: Complemental strand, 44503778 - 44503643
Alignment:
Q  258 gtccctcaattaatctccatttttcattttggtctcacaattgataaaaagtaccttttggtcccttagattttcctccgtttgccgaataaatcccgac 357  Q
    ||||||||| |||| || | |||| ||||||||||||||||| |||||  |||| ||||||||||| |  |||||||| ||||||| |||||||||||||    
T  44503778 gtccctcaaataatttcaagtttttattttggtctcacaattaataaac-gtacattttggtccctcactttttcctctgtttgccaaataaatcccgac 44503680  T
Q  358 ggttaac-tttaacccaaattatgtctatggtggaccaa 395  Q
     |||||| |||||||| ||  |||||||||||| |||||    
T  44503679 cgttaacttttaaccctaa--atgtctatggtgaaccaa 44503643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 238 - 395
Target Start/End: Complemental strand, 10168903 - 10168746
Alignment:
Q  238 taggcttattagatccgttggtccctcaattaatctccatttttcattttggtctcacaattgataaaaagtaccttttggtcccttagattttcctccg 337  Q
    |||||||||||||||  ||||||| | | ||||| ||   |||||||||||||| ||||||| |||||||   | |||| |||||| | |||||||||||    
T  10168903 taggcttattagatcgtttggtccattatttaatttcatgttttcattttggtcccacaattaataaaaatggcgttttagtccctcacattttcctccg 10168804  T
Q  338 tttgccgaataaatcc-cgacggttaactttaacccaaattatgtctatggtggaccaa 395  Q
    |||||| |||||||||  ||| ||||||||||||||  |  ||||||||||||||||||    
T  10168803 tttgccaaataaatccatgacagttaactttaaccccca-aatgtctatggtggaccaa 10168746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 239 - 369
Target Start/End: Original strand, 42871092 - 42871222
Alignment:
Q  239 aggcttattagatccgttggtccctcaattaatctccatttttcattttggtctcacaattgataaaaagtaccttttggtcccttagattttcctccgt 338  Q
    ||||||||| |||||  |||||||   |||||| || | ||||||||||| || ||||||| |||||| |||| ||||||||||| |  |||||||||||    
T  42871092 aggcttatttgatccaatggtcccctgattaatttcaaattttcattttgatcccacaattaataaaacgtacgttttggtccctcactttttcctccgt 42871191  T
Q  339 ttgccgaataaatcccgacggttaactttaa 369  Q
    ||||| ||||||||| ||| ||||| |||||    
T  42871192 ttgccaaataaatcctgactgttaagtttaa 42871222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 417 - 519
Target Start/End: Complemental strand, 42872238 - 42872137
Alignment:
Q  417 atcttttttattaaaagatgattgttagatcatgcatgtctagtgtatcttccagtgagtcaacaacacttaaccctttttcccatttcttcatcttcat 516  Q
    |||||||||||||||||| ||| ||||||| |||||| |||| |||||||| ||||||||||||||||||| |   ||||  |||||||||||||||| |    
T  42872238 atcttttttattaaaagaggatcgttagattatgcatatctactgtatctt-cagtgagtcaacaacacttgatttttttctccatttcttcatcttctt 42872140  T
Q  517 ccc 519  Q
    |||    
T  42872139 ccc 42872137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 240 - 371
Target Start/End: Original strand, 390215 - 390346
Alignment:
Q  240 ggcttattagatccgttggtccctcaattaatctccatttttcattttggtctcacaattgataaaaagtaccttttggtcccttagattttcctccgtt 339  Q
    |||||||| ||| | ||||||||  || |||| || | |||||||||||||| ||||||| |||||| |||  ||||||||||| |  | ||||||||||    
T  390215 ggcttatttgattcattggtcccctaaataatttcaagttttcattttggtcccacaattaataaaacgtatattttggtccctcatttcttcctccgtt 390314  T
Q  340 tgccgaataaatcccgacggttaactttaacc 371  Q
    |||| ||||||||| ||| ||||| |||||||    
T  390315 tgccaaataaatcctgactgttaagtttaacc 390346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 239 - 354
Target Start/End: Complemental strand, 1831382 - 1831267
Alignment:
Q  239 aggcttattagatccgttggtccctcaattaatctccatttttcattttggtctcacaattgataaaaagtaccttttggtcccttagattttcctccgt 338  Q
    ||||||||| |||||  |||||||||||||||| || | |||||||||| ||| ||||||| |||||| |||| ||||||||||| |  ||||||||| |    
T  1831382 aggcttatttgatccaatggtccctcaattaatttcaagttttcattttagtcccacaattaataaaacgtacattttggtccctcattttttcctccat 1831283  T
Q  339 ttgccgaataaatccc 354  Q
    ||  | ||||||||||    
T  1831282 ttttcaaataaatccc 1831267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 237 - 402
Target Start/End: Complemental strand, 1588210 - 1588044
Alignment:
Q  237 ttaggcttattagatccgttggtccctcaattaatctccatttttcattttggtctcacaattgataaaaagtaccttttggtcccttagattttcctcc 336  Q
    ||||||||||| ||||  |||||||||||| |||| |  | |||||||||| ||| ||||||| |||||| |||| |||   ||||| |  |||||||||    
T  1588210 ttaggcttatttgatcttttggtccctcaaataattttaagttttcattttagtcccacaattaataaaatgtacgtttaaatccctcactttttcctcc 1588111  T
Q  337 gtttgccgaataaatcccgacggttaactttaa-cccaaattatgtctatggtggaccaatcttaaa 402  Q
    |||| || |||||||   ||| ||||| ||||| ||||||| ||||||||||| |||||| ||||||    
T  1588110 gtttaccaaataaattatgactgttaagtttaaccccaaatgatgtctatggtagaccaaccttaaa 1588044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 235 - 349
Target Start/End: Complemental strand, 42872422 - 42872308
Alignment:
Q  235 ttttaggcttattagatccgttggtccctcaattaatctccatttttcattttggtctcacaattgataaaaagtaccttttggtcccttagattttcct 334  Q
    ||||||| ||||| ||| |  |||||||  |||||||  |||||||||||||||||| || |||| |||||| |||| ||||||||||| |  |||||||    
T  42872422 ttttaggtttatttgattcaatggtcccctaattaattaccatttttcattttggtcccataattaataaaatgtacgttttggtccctcactttttcct 42872323  T
Q  335 ccgtttgccgaataa 349  Q
    ||||||||| |||||    
T  42872322 ccgtttgccaaataa 42872308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 237 - 354
Target Start/End: Original strand, 10167420 - 10167537
Alignment:
Q  237 ttaggcttattagatccgttggtccctcaattaatctccatttttcattttggtctcacaattgataaaaagtaccttttggtcccttagattttcctcc 336  Q
    ||||||||||||||||  ||||||||| | ||||| ||   |||||||||||||  ||||||| ||||||| | | |||| |||||| | ||||||||||    
T  10167420 ttaggcttattagatcgtttggtcccttatttaatttcatgttttcattttggtaccacaattaataaaaattgcattttagtccctcatattttcctcc 10167519  T
Q  337 gtttgccgaataaatccc 354  Q
    ||||| | ||||||||||    
T  10167520 gtttgtcaaataaatccc 10167537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 239 - 353
Target Start/End: Complemental strand, 31968511 - 31968397
Alignment:
Q  239 aggcttattagatccgttggtccctcaattaatctccatttttcattttggtctcacaattgataaaaagtaccttttggtcccttagattttcctccgt 338  Q
    |||||||||||||||   ||||||  ||||||| |  ||||||||||||||||  |||||| |||||| |||| ||||||||| | |  |||||||| ||    
T  31968511 aggcttattagatccaacggtcccctaattaattttaatttttcattttggtcctacaattaataaaacgtacgttttggtccttcactttttcctctgt 31968412  T
Q  339 ttgccgaataaatcc 353  Q
    ||||| |||||||||    
T  31968411 ttgccaaataaatcc 31968397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 278 - 411
Target Start/End: Complemental strand, 52241235 - 52241105
Alignment:
Q  278 ttttcattttggtctcacaattgataaaaagtaccttttggtcccttagattttcctccgtttgccgaataaatcccgacggttaactttaacccaaatt 377  Q
    ||||||||||| |  ||||||| |||||| |||| ||||| | ||| |  |||||||||||||||| ||||||| ||||| |||||||||||| | ||      
T  52241235 ttttcattttgattccacaattaataaaacgtacgttttgattcctcatcttttcctccgtttgccaaataaattccgaccgttaactttaactccaa-- 52241138  T
Q  378 atgtctatggtggaccaatcttaaaagtggtcca 411  Q
    || |||||||| |||||  |||||||||||||||    
T  52241137 atatctatggt-gaccatccttaaaagtggtcca 52241105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 328 - 416
Target Start/End: Complemental strand, 15450105 - 15450017
Alignment:
Q  328 ttttcctccgtttgccgaataaatcccgacggttaactttaac-ccaaattatgtctatggtggaccaatcttaaaagtggtccaccata 416  Q
    |||||||||||||||| ||||||||   |||||||| |||||| ||||||  ||||||| ||||||||| ||||| ||||||||||||||    
T  15450105 ttttcctccgtttgccaaataaatctt-acggttaagtttaactccaaatgttgtctatcgtggaccaaccttaagagtggtccaccata 15450017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 239 - 416
Target Start/End: Original strand, 23201843 - 23202020
Alignment:
Q  239 aggcttattagatccgttggtccctcaattaatctccatttttcattttggtctcacaattgataaaaagtaccttttggtcccttagattttcctccgt 338  Q
    |||||||||||||   ||||||||| | ||||| ||   |||| ||||||||| |||| || |||||||   | ||||||||||| |  |||||||||||    
T  23201843 aggcttattagattgtttggtcccttatttaatttcatgtttttattttggtcccacatttaataaaaatggcattttggtccctcaccttttcctccgt 23201942  T
Q  339 ttgccgaataaatcccgacggttaactttaacccaaattatgtctatggtggaccaatcttaaaagtggtccaccata 416  Q
    ||||| |||||||||| || ||||| |||||   |||| |||| ||||||||| ||   |||| |||||| |||||||    
T  23201943 ttgccaaataaatcccaaccgttaagtttaataaaaatgatgtttatggtggatcatctttaagagtggtacaccata 23202020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 234 - 370
Target Start/End: Complemental strand, 54866754 - 54866619
Alignment:
Q  234 tttttaggcttattagatccgttggtccctcaattaatctccatttttcattttggtctcacaattgataaaaagtaccttttggtcccttagattttcc 333  Q
    ||||| |||||||||||||  ||||||||| | ||||| ||   |||||||||||||| ||||||| |||||||     |||| ||||||||  ||||||    
T  54866754 ttttttggcttattagatcgtttggtcccttatttaatttcatattttcattttggtc-cacaattaataaaaatggtgttttagtcccttacgttttcc 54866656  T
Q  334 tccgtttgccgaataaatcccgacggttaactttaac 370  Q
    |||||||||| ||||||||  ||| ||||| ||||||    
T  54866655 tccgtttgccaaataaatcatgactgttaagtttaac 54866619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 240 - 409
Target Start/End: Complemental strand, 23204071 - 23203904
Alignment:
Q  240 ggcttattagatccgttggtccctcaattaatctccatttttcattttggtctcacaattgataaaaagtaccttttggtcccttagattttcctccgtt 339  Q
    |||||||||||||  ||||||||| | ||||| ||   |||||||||||||| |||| || |||||||   | ||||||||| | |  |||| |||||||    
T  23204071 ggcttattagatcgtttggtcccttatttaatttcatattttcattttggtcccacatttaataaaaatggcgttttggtccgtcatctttttctccgtt 23203972  T
Q  340 tgccgaataaatcccgacggttaactttaacccaaattatgtctatggtggaccaatcttaaaagtggtc 409  Q
    |||| | |||||||| |   ||||||||||| | ||  || ||||||||||| ||| |||||||||||||    
T  23203971 tgccaattaaatcccaagtattaactttaactctaa--atatctatggtggatcaaccttaaaagtggtc 23203904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 378 - 409
Target Start/End: Original strand, 2311088 - 2311119
Alignment:
Q  378 atgtctatggtggaccaatcttaaaagtggtc 409  Q
    ||||||||||||||||||||||||||||||||    
T  2311088 atgtctatggtggaccaatcttaaaagtggtc 2311119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #40
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 278 - 395
Target Start/End: Complemental strand, 33232777 - 33232663
Alignment:
Q  278 ttttcattttggtctcacaattgataaaaagtaccttttggtcccttagattttcctccgtttgccgaataaatcccgacggttaactttaacccaaatt 377  Q
    |||| ||||||||| ||||||| |||||||   | |||| |||||| | ||||||||||||||||| ||||||||    | |||||||||||| |||       
T  33232777 tttttattttggtcccacaattaataaaaatggcgttttagtccctcacattttcctccgtttgccaaataaatcttttccgttaactttaactcaa--- 33232681  T
Q  378 atgtctatggtggaccaa 395  Q
    |||||||| |||||||||    
T  33232680 atgtctattgtggaccaa 33232663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #41
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 278 - 353
Target Start/End: Complemental strand, 50548303 - 50548228
Alignment:
Q  278 ttttcattttggtctcacaattgataaaaagtaccttttggtcccttagattttcctccgtttgccgaataaatcc 353  Q
    |||||||||||||| ||||||| |||| ||  || |||| |||||| | ||||||||| ||||||| |||||||||    
T  50548303 ttttcattttggtcccacaattaataagaataacgttttagtccctcacattttcctctgtttgccaaataaatcc 50548228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #42
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 444 - 514
Target Start/End: Complemental strand, 13533144 - 13533074
Alignment:
Q  444 gatcatgcatgtctagtgtatcttccagtgagtcaacaacacttaaccctttttcccatttcttcatcttc 514  Q
    ||||||||| ||||| ||||||||| ||||| ||| ||||||||||   |||||  |||||||||||||||    
T  13533144 gatcatgcaagtctattgtatcttcaagtgaatcatcaacacttaattgtttttttcatttcttcatcttc 13533074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #43
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 378 - 416
Target Start/End: Complemental strand, 19750275 - 19750237
Alignment:
Q  378 atgtctatggtggaccaatcttaaaagtggtccaccata 416  Q
    ||||||||||||||| |||||||||||| ||||||||||    
T  19750275 atgtctatggtggacaaatcttaaaagttgtccaccata 19750237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #44
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 378 - 416
Target Start/End: Original strand, 19789531 - 19789569
Alignment:
Q  378 atgtctatggtggaccaatcttaaaagtggtccaccata 416  Q
    ||||||||||||||| |||||||||||| ||||||||||    
T  19789531 atgtctatggtggacaaatcttaaaagttgtccaccata 19789569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #45
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 359 - 416
Target Start/End: Original strand, 56085465 - 56085520
Alignment:
Q  359 gttaactttaacccaaattatgtctatggtggaccaatcttaaaagtggtccaccata 416  Q
    |||||||||||||| ||  ||||||||||||||| || ||||| ||||||||||||||    
T  56085465 gttaactttaaccccaa--atgtctatggtggactaaccttaagagtggtccaccata 56085520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #46
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 328 - 408
Target Start/End: Complemental strand, 7708818 - 7708740
Alignment:
Q  328 ttttcctccgtttgccgaataaatcccgacggttaactttaacccaaattatgtctatggtggaccaatcttaaaagtggt 408  Q
    |||| ||| ||||||| |||||||||| |  |||||||||||| | || |||  |||||||||||||| ||||||||||||    
T  7708818 tttttctctgtttgccaaataaatcccaagtgttaactttaactctaaatat--ctatggtggaccaaccttaaaagtggt 7708740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #47
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 265 - 353
Target Start/End: Original strand, 31965858 - 31965946
Alignment:
Q  265 aattaatctccatttttcattttggtctcacaattgataaaaagtaccttttggtcccttagattttcctccgtttgccgaataaatcc 353  Q
    ||||||| || | |||| ||| |||||  |||||| | |||| |||| ||||||||||| |  |||||||||||||||| |||||||||    
T  31965858 aattaatttcaagtttttattctggtcctacaattaagaaaatgtacattttggtccctcactttttcctccgtttgccaaataaatcc 31965946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #48
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 240 - 352
Target Start/End: Original strand, 44501516 - 44501628
Alignment:
Q  240 ggcttattagatccgttggtccctcaattaatctccatttttcattttggtctcacaattgataaaaagtaccttttggtcccttagattttcctccgtt 339  Q
    |||||||| || || |||||||||||| |||| || | |||||||| ||||| || |||| |||||| |||| |||  |||||| |  |||| ||| |||    
T  44501516 ggcttatttgaaccattggtccctcaaataatttcaagttttcattctggtcccataattaataaaacgtacgtttaagtccctcacttttttctctgtt 44501615  T
Q  340 tgccgaataaatc 352  Q
    |||| ||||||||    
T  44501616 tgccaaataaatc 44501628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #49
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 276 - 352
Target Start/End: Original strand, 54484347 - 54484423
Alignment:
Q  276 atttttcattttggtctcacaattgataaaaagtaccttttggtcccttagattttcctccgtttgccgaataaatc 352  Q
    |||||| ||||||||  || |||| |||||| || | ||||||||||| | ||||||||| ||||||| ||||||||    
T  54484347 attttttattttggtaccataattaataaaacgttcgttttggtccctaaaattttcctctgtttgccaaataaatc 54484423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 76; Significance: 7e-35; HSPs: 26)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 238 - 416
Target Start/End: Original strand, 29219381 - 29219560
Alignment:
Q  238 taggcttattagatccgttggtccctcaattaatctccatttttcattttggtctcacaattgataaaaagtaccttttggtcccttagattttcctccg 337  Q
    |||||||||||||||  ||||||| | | ||||| ||   |||||||||||||| ||||||| |||||||   | |||| |||||| |  ||||||||||    
T  29219381 taggcttattagatcgtttggtcctttatttaatttcatgttttcattttggtcccacaattaataaaaatggcgttttagtccctcaccttttcctccg 29219480  T
Q  338 tttgccgaataaatcccgacggttaactttaaccc-aaattatgtctatggtggaccaatcttaaaagtggtccaccata 416  Q
    |||||| |||||||||| || ||||| |||||||| |||| |||||||||||||||||||||||||||||||||||||||    
T  29219481 tttgccaaataaatcccaactgttaagtttaaccccaaatgatgtctatggtggaccaatcttaaaagtggtccaccata 29219560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 238 - 416
Target Start/End: Original strand, 29332680 - 29332859
Alignment:
Q  238 taggcttattagatccgttggtccctcaattaatctccatttttcattttggtctcacaattgataaaaagtaccttttggtcccttagattttcctccg 337  Q
    |||||||||||||||  ||||||| | | ||||| ||   |||||||||||||| ||||||| |||||||   | |||| |||||| |  ||||||||||    
T  29332680 taggcttattagatcgtttggtcctttatttaatttcatgttttcattttggtcccacaattaataaaaatggcgttttagtccctcaccttttcctccg 29332779  T
Q  338 tttgccgaataaatcccgacggttaactttaaccc-aaattatgtctatggtggaccaatcttaaaagtggtccaccata 416  Q
    |||||| |||||||||| || ||||| |||||||| |||| |||||||||||||||||||||||||||||||||||||||    
T  29332780 tttgccaaataaatcccaactgttaagtttaaccccaaatgatgtctatggtggaccaatcttaaaagtggtccaccata 29332859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 240 - 409
Target Start/End: Complemental strand, 17460802 - 17460635
Alignment:
Q  240 ggcttattagatccgttggtccctcaattaatctccatttttcattttggtctcacaattgataaaaagtaccttttggtcccttagattttcctccgtt 339  Q
    |||||||| |||||  ||||||   ||||||| || | ||||||||||| || ||||||| |||||| |||| ||||||||||| | |||||||||||||    
T  17460802 ggcttatttgatccaatggtcctctaattaatttcaagttttcattttgatcccacaattaataaaacgtacgttttggtccctcaaattttcctccgtt 17460703  T
Q  340 tgccgaataaatcccgacggttaactttaacccaaattatgtctatggtggaccaatcttaaaagtggtc 409  Q
    | || ||||||||||||| ||||||||||||   ||  ||||||||||||||||||||||||||||||||    
T  17460702 tcccaaataaatcccgaccgttaactttaactttaa--atgtctatggtggaccaatcttaaaagtggtc 17460635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 235 - 416
Target Start/End: Complemental strand, 18617129 - 18616947
Alignment:
Q  235 ttttaggcttattagatccgttggtccctcaattaatctccatttttcattttggtctcacaattgataaaaagtaccttttggtcccttagattttcct 334  Q
    ||||||||||||||||||  ||||||| | | ||||| ||   |||||||||||||| ||||||| |||||||   | |||| |||||| |  |||||||    
T  18617129 ttttaggcttattagatcatttggtcctttatttaatttcatgttttcattttggtcccacaattaataaaaatggcgttttagtccctcaccttttcct 18617030  T
Q  335 ccgtttgccgaataaatcccgacggttaactttaaccc-aaattatgtctatggtggaccaatcttaaaagtggtccaccata 416  Q
    ||||||||| |||||||||| ||  |||| |||||||| |||| ||||||||||||||||| |||||||||||||||||||||    
T  18617029 ccgtttgccaaataaatcccaactattaagtttaaccccaaatgatgtctatggtggaccagtcttaaaagtggtccaccata 18616947  T

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Target: chr2; HSP #5
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 235 - 416
Target Start/End: Complemental strand, 6030593 - 6030412
Alignment:
Q  235 ttttaggcttattagatccgttggtccctcaattaatctccatttttcattttggtctcacaattgataaaaagtaccttttggtcccttagattttcct 334  Q
    ||||||||||||| |||||  | ||||||||| |||| |  | ||||||||||| || ||||||| || |||||||| ||||| ||| | | ||||||||    
T  6030593 ttttaggcttatttgatccaatagtccctcaaataatttgaagttttcattttgatcccacaattaattaaaagtacgttttgatccttcatattttcct 6030494  T
Q  335 ccgtttgccgaataaatcccgacggttaactttaacccaaattatgtctatggtggaccaatcttaaaagtggtccaccata 416  Q
    |  |||||| |||||||| | || |||||||||||||||||| ||||||| |||||||||| ||||| |||| || ||||||    
T  6030493 ctatttgccaaataaatctcaacagttaactttaacccaaatgatgtctacggtggaccaaccttaagagtgatctaccata 6030412  T

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Target: chr2; HSP #6
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 417 - 532
Target Start/End: Complemental strand, 6030378 - 6030263
Alignment:
Q  417 atcttttttattaaaagatgattgttagatcatgcatgtctagtgtatcttccagtgagtcaacaacacttaac-cctttttcccatttcttcatcttca 515  Q
    |||||||||||||||||||||  |||| |||||||||||||| ||||||||||| |||||||||||||||||||   ||||||||||||| |||||||||    
T  6030378 atcttttttattaaaagatgaacgttatatcatgcatgtctactgtatcttcca-tgagtcaacaacacttaacttttttttcccatttcatcatcttca 6030280  T
Q  516 tccctctcatcttcatc 532  Q
     |||||| | |||||||    
T  6030279 cccctctaaccttcatc 6030263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 256 - 416
Target Start/End: Complemental strand, 11317470 - 11317310
Alignment:
Q  256 tggtccctcaattaatctccatttttcattttggtctcacaattgataaaaagtaccttttggtcccttagattttcctccgtttgccgaataaatcccg 355  Q
    ||||||||||| |||| || | |||||||||||||| ||||||| ||||||  ||  ||||||||||| |  |||||||||||||| | |||||||||      
T  11317470 tggtccctcaaataatttcaaattttcattttggtcccacaattaataaaacatatattttggtccctcaatttttcctccgtttggcaaataaatcctc 11317371  T
Q  356 acggttaactttaacccaaattatgtctatggtggaccaatcttaaaagtggtccaccata 416  Q
    || ||||| |||||| ||||| ||||||||||| |||||| ||||| ||||||| ||||||    
T  11317370 acagttaagtttaactcaaatgatgtctatggtagaccaaccttaagagtggtctaccata 11317310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 239 - 417
Target Start/End: Original strand, 43033079 - 43033255
Alignment:
Q  239 aggcttattagatccgttggtccctcaattaatctccatttttcattttggtctcacaattgataaaaagtaccttttggtcccttagattttcctccgt 338  Q
    ||||||||| |||||  || ||||| || |||| || | |||||||||||||| ||||||| |||||| |||||||||||||||| |  |||||||||||    
T  43033079 aggcttatttgatccaatgatcccttaaataatttcaagttttcattttggtcccacaattaataaaacgtaccttttggtccctcactttttcctccgt 43033178  T
Q  339 ttgccgaataaatcc-cgacggttaactttaacccaaattatgtctatggtggaccaatcttaaaagtggtccaccataa 417  Q
    ||||| ||||||||| |||  ||||| |||||||  ||  ||||||||||| |||||| ||||| |||||||||||||||    
T  43033179 ttgccaaataaatcctcga-tgttaagtttaacctcaa--atgtctatggtagaccaaccttaagagtggtccaccataa 43033255  T

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Target: chr2; HSP #9
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 240 - 406
Target Start/End: Original strand, 17459251 - 17459418
Alignment:
Q  240 ggcttattagatccgttggtccctcaattaatctccatttttcattttggtctcacaattgataaaaagtaccttttggtcccttagattttcctccgtt 339  Q
    |||||||| ||||| || |||||| || |||| || | |||||||||||||| ||||||| |||||| |||| |||  |||||| |  ||||||||||||    
T  17459251 ggcttatttgatccattagtcccttaaataatttcaagttttcattttggtcacacaattaataaaacgtacgtttaagtccctcactttttcctccgtt 17459350  T
Q  340 tgccgaataaatcccgacggttaactttaa-cccaaattatgtctatggtggaccaatcttaaaagtg 406  Q
    |||| ||||||| | |||  |||| ||||| ||||||| ||||||||||||||| |||||||||||||    
T  17459351 tgccaaataaattctgacttttaagtttaaccccaaatgatgtctatggtggacgaatcttaaaagtg 17459418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 236 - 369
Target Start/End: Original strand, 18615510 - 18615643
Alignment:
Q  236 tttaggcttattagatccgttggtccctcaattaatctccatttttcattttggtctcacaattgataaaaagtaccttttggtcccttagattttcctc 335  Q
    |||| ||||||||||||  ||||||||| | ||||| ||   |||||||||||||||||||||| |||||||   | |||| ||||| || |||||||||    
T  18615510 tttatgcttattagatcgtttggtcccttatttaatttcatattttcattttggtctcacaattaataaaaatggctttttagtcccctacattttcctc 18615609  T
Q  336 cgtttgccgaataaatcccgacggttaactttaa 369  Q
    |||||||| ||||||||||||| ||||| |||||    
T  18615610 cgtttgccaaataaatcccgactgttaattttaa 18615643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 278 - 413
Target Start/End: Original strand, 11315969 - 11316102
Alignment:
Q  278 ttttcattttggtctcacaattgataaaaagtaccttttggtcccttagattttcctccgtttgccgaataaatcccgacggttaactttaacccaaatt 377  Q
    |||||||||||||| ||||||| |||||| |||| |||  |||||| || |||||||||||||||| ||||||||||| | ||||| |||||  | ||      
T  11315969 ttttcattttggtcccacaattaataaaacgtacgtttaagtccctcaggttttcctccgtttgccaaataaatcccggctgttaagtttaattccaa-- 11316066  T
Q  378 atgtctatggtggaccaatcttaaaagtggtccacc 413  Q
    |||||||||||||| ||| ||||||| |||||||||    
T  11316067 atgtctatggtggatcaaccttaaaaatggtccacc 11316102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 234 - 369
Target Start/End: Complemental strand, 28562933 - 28562798
Alignment:
Q  234 tttttaggcttattagatccgttggtccctcaattaatctccatttttcattttggtctcacaattgataaaaagtaccttttggtcccttagattttcc 333  Q
    |||||||||||||| ||| |  ||||||||||| |||| || | |||||||||||||| || |||| ||||||  ||||||||||||||| |  ||||||    
T  28562933 tttttaggcttatttgattcaatggtccctcaaataatttcaaattttcattttggtcccataattaataaaacataccttttggtccctcactttttcc 28562834  T
Q  334 tccgtttgccgaataaatcccgacggttaactttaa 369  Q
    |||||||| | ||||||||| ||| ||||| |||||    
T  28562833 tccgtttgtcaaataaatccagactgttaagtttaa 28562798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 239 - 412
Target Start/End: Original strand, 32469145 - 32469319
Alignment:
Q  239 aggcttattagatccgttggtccctcaattaatctccatttttcattttggtctcacaattgataaaaagt--accttttggtcccttagattttcctcc 336  Q
    ||||||||| ||| |  ||||||||||| |||| || | ||||||||||| || ||||||| |||||| ||  |||||||||||| | |  |||||||||    
T  32469145 aggcttatttgattcaatggtccctcaaataatttcaagttttcattttgatcccacaattaataaaacgtgtaccttttggtccttcactttttcctcc 32469244  T
Q  337 gtttgccgaataaatcccgacggttaactttaacccaaattatgtctatggtggaccaatcttaaaagtggtccac 412  Q
    ||| ||| |||||||||  |  ||||| |||||| |||||||||| |||||||||||||  |||| ||||||||||    
T  32469245 gtt-gccaaataaatccttatagttaagtttaactcaaattatgtatatggtggaccaactttaagagtggtccac 32469319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 240 - 369
Target Start/End: Complemental strand, 29220994 - 29220865
Alignment:
Q  240 ggcttattagatccgttggtccctcaattaatctccatttttcattttggtctcacaattgataaaaagtaccttttggtcccttagattttcctccgtt 339  Q
    |||||||||||||  ||||||||| | ||||| ||   |||||||||||||| ||||||| |||||||   | |||| |||||||| ||||||||| |||    
T  29220994 ggcttattagatcgtttggtcccttatttaatttcatattttcattttggtcccacaattaataaaaatggctttttagtcccttacattttcctctgtt 29220895  T
Q  340 tgccgaataaatcccgacggttaactttaa 369  Q
    |||| ||| ||||||||| ||||| |||||    
T  29220894 tgccaaattaatcccgactgttaattttaa 29220865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 240 - 369
Target Start/End: Complemental strand, 29334293 - 29334164
Alignment:
Q  240 ggcttattagatccgttggtccctcaattaatctccatttttcattttggtctcacaattgataaaaagtaccttttggtcccttagattttcctccgtt 339  Q
    |||||||||||||  ||||||||| | ||||| ||   |||||||||||||| ||||||| |||||||   | |||| |||||||| ||||||||| |||    
T  29334293 ggcttattagatcgtttggtcccttatttaatttcatattttcattttggtcccacaattaataaaaatggctttttagtcccttacattttcctctgtt 29334194  T
Q  340 tgccgaataaatcccgacggttaactttaa 369  Q
    |||| ||| ||||||||| ||||| |||||    
T  29334193 tgccaaattaatcccgactgttaattttaa 29334164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 256 - 416
Target Start/End: Complemental strand, 42641962 - 42641803
Alignment:
Q  256 tggtccctcaattaatctccatttttcattttggtctcacaattgataaaaagtaccttttggtcccttagattttcctccgtttgccgaataaatcccg 355  Q
    ||||||||||| |||| || | |||| ||||||||| || |||| |||||| | |||||||||||||  |  ||||  |||||||||| |||||||||      
T  42641962 tggtccctcaaataatttcaaatttttattttggtcccataattaataaaacgcaccttttggtcccccactttttt-tccgtttgccaaataaatcctc 42641864  T
Q  356 acggttaactttaacccaaattatgtctatggtggaccaatcttaaaagtggtccaccata 416  Q
    ||  |||| || ||||||||| ||||||||||||| |||| ||||| ||||||| ||||||    
T  42641863 acaattaagttcaacccaaatgatgtctatggtgggccaaccttaagagtggtctaccata 42641803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 256 - 352
Target Start/End: Complemental strand, 43034573 - 43034477
Alignment:
Q  256 tggtccctcaattaatctccatttttcattttggtctcacaattgataaaaagtaccttttggtcccttagattttcctccgtttgccgaataaatc 352  Q
    ||||||||||| |||| || | ||||||||||  |||||||||| |||||| |||||||||||||||| |  |||||||||||||| | ||||||||    
T  43034573 tggtccctcaaataatttcaagttttcattttaatctcacaattaataaaacgtaccttttggtccctcactttttcctccgtttgtcaaataaatc 43034477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 239 - 401
Target Start/End: Complemental strand, 7437880 - 7437718
Alignment:
Q  239 aggcttattagatccgttggtccctcaattaatctccatttttcattttggtctcacaattgataaaaagtaccttttggtcccttagattttcctccgt 338  Q
    ||||||||| |||||  ||||  ||||| |||| || | |||||||||||||| ||||||| |||||| |||  ||||||||||| |  |||||||||||    
T  7437880 aggcttatttgatccaatggttgctcaaataatttcaagttttcattttggtcccacaattaataaaacgtatattttggtccctcaatttttcctccgt 7437781  T
Q  339 ttgccgaataaatcccgacggttaactttaacccaaattatgtctatggtggaccaatcttaa 401  Q
    || |  |||||||||  ||  |||| |||||||||||| || |||||| ||||| ||| ||||    
T  7437780 ttacaaaataaatcctaacaattaagtttaacccaaataatatctatgatggactaattttaa 7437718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 233 - 411
Target Start/End: Complemental strand, 32470700 - 32470524
Alignment:
Q  233 ttttttaggcttattagatccgttggtccctcaattaatctccatttttcattttggtctcacaattgataaaaagtaccttttggtcccttagattttc 332  Q
    |||||| |||||||| ||||| || |||||  || |||| || | |||| ||||||||| ||||||| |||||| |||| |||  || ||| |  |||||    
T  32470700 tttttttggcttatttgatccattagtcccctaaataatttcaagtttttattttggtcccacaattaataaaacgtacgtttaagttcctcatgttttc 32470601  T
Q  333 ctccgtttgccgaataaatcccgacggttaactttaacccaaattatgtctatggtggaccaatcttaaaagtggtcca 411  Q
    ||||||||| | ||||||||||| | ||||| |||||| | ||  ||||||||||||||  || ||||||| |||||||    
T  32470600 ctccgtttgtcaaataaatcccggctgttaagtttaactccaa--atgtctatggtggataaaccttaaaaatggtcca 32470524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 278 - 351
Target Start/End: Original strand, 28561404 - 28561477
Alignment:
Q  278 ttttcattttggtctcacaattgataaaaagtaccttttggtcccttagattttcctccgtttgccgaataaat 351  Q
    |||||||||||||||||||||| |||||| ||| |||||||||||| |  ||||||| |||||| | |||||||    
T  28561404 ttttcattttggtctcacaattaataaaacgtatcttttggtccctcaccttttcctacgtttgtcaaataaat 28561477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 313 - 411
Target Start/End: Original strand, 6028787 - 6028884
Alignment:
Q  313 ttttggtcccttagattttcctccgtttgccgaataaatc-ccgacggttaactttaacccaaattatgtctatggtggaccaatcttaaaagtggtcca 411  Q
    ||||||||||| |  |||| || |||||||| |||||||  |||||||||||||||||| | ||  |||| |||||||||||| ||||||||||||||||    
T  6028787 ttttggtccctcaagtttttcttcgtttgccaaataaatttccgacggttaactttaactctaa--atgtatatggtggaccagtcttaaaagtggtcca 6028884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 241 - 352
Target Start/End: Original strand, 34468957 - 34469068
Alignment:
Q  241 gcttattagatccgttggtccctcaattaatctccatttttcattttggtctcacaattgataaaaagtaccttttggtcccttagattttcctccgttt 340  Q
    ||||||||||||  ||||||||| | ||||| ||   |||||||||||||| ||||||| |||||||  || |||| |||||| | |||||| || ||||    
T  34468957 gcttattagatcgtttggtcccttatttaatttcatgttttcattttggtcgcacaattaataaaaatgacgttttagtccctcacattttcttctgttt 34469056  T
Q  341 gccgaataaatc 352  Q
    ||| ||||||||    
T  34469057 gccaaataaatc 34469068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 328 - 416
Target Start/End: Original strand, 11547745 - 11547834
Alignment:
Q  328 ttttcctccgtttgccgaataaatcccgacggttaactttaaccc-aaattatgtctatggtggaccaatcttaaaagtggtccaccata 416  Q
    ||||||| |||||| | ||||||||| ||| ||||| |||||||| |||| ||||||||  |||||||| ||||  ||||||||||||||    
T  11547745 ttttccttcgtttgtcaaataaatcctgactgttaagtttaaccccaaatgatgtctatcatggaccaaccttaggagtggtccaccata 11547834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 238 - 354
Target Start/End: Original strand, 6030601 - 6030717
Alignment:
Q  238 taggcttattagatccgttggtccctcaattaatctccatttttcattttggtctcacaattgataaaaagtaccttttggtcccttagattttcctccg 337  Q
    |||||||||||||||  ||||||||| | ||||| ||   |||||||||| ||| ||||||| ||||||    | |||| || |||||  ||||||||||    
T  6030601 taggcttattagatcgtttggtcccttatttaatttcatgttttcattttagtcccacaattaataaaattggcgttttagttccttattttttcctccg 6030700  T
Q  338 tttgccgaataaatccc 354  Q
    |||||| ||||||||||    
T  6030701 tttgccaaataaatccc 6030717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 417 - 484
Target Start/End: Original strand, 30748686 - 30748753
Alignment:
Q  417 atcttttttattaaaagatgattgttagatcatgcatgtctagtgtatcttccagtgagtcaacaaca 484  Q
    |||||||||||||||||| ||| ||||  ||||||||||||||| ||||||   |||| |||||||||    
T  30748686 atcttttttattaaaagaggatcgttaattcatgcatgtctagtatatcttatggtgaatcaacaaca 30748753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 420 - 484
Target Start/End: Complemental strand, 30749230 - 30749166
Alignment:
Q  420 ttttttattaaaagatgattgttagatcatgcatgtctagtgtatcttccagtgagtcaacaaca 484  Q
    ||||| ||||||||| ||  ||||||||||||||||||| |||||||| | ||||  ||||||||    
T  30749230 tttttgattaaaagaggaccgttagatcatgcatgtctactgtatcttacggtgaaccaacaaca 30749166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0201 (Bit Score: 70; Significance: 3e-31; HSPs: 1)
Name: scaffold0201
Description:

Target: scaffold0201; HSP #1
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 239 - 352
Target Start/End: Original strand, 21124 - 21237
Alignment:
Q  239 aggcttattagatccgttggtccctcaattaatctccatttttcattttggtctcacaattgataaaaagtaccttttggtcccttagattttcctccgt 338  Q
    ||||||||||||||| |||| |||||||||||| | ||||||||||||| ||| || |||| ||||||||||||||||| |||||||| |||||||||||    
T  21124 aggcttattagatccattggcccctcaattaattttcatttttcattttagtcccataattaataaaaagtaccttttgatcccttagtttttcctccgt 21223  T
Q  339 ttgccgaataaatc 352  Q
    ||||| ||||||||    
T  21224 ttgccaaataaatc 21237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 60; Significance: 2e-25; HSPs: 20)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 239 - 413
Target Start/End: Complemental strand, 23397473 - 23397301
Alignment:
Q  239 aggcttattagatccgttggtccctcaattaatctccatttttcattttggtctcacaattgataaaaagtaccttttggtcccttagattttcctccgt 338  Q
    ||||||||||||||  ||||||||| | ||||| ||   |||||||||||||| ||||||| |||||||   | |||| |||||| |  |||||||||||    
T  23397473 aggcttattagatcatttggtcccttatttaatttcgtgttttcattttggtcccacaattaataaaaatggcgttttagtccctcaccttttcctccgt 23397374  T
Q  339 ttgccgaataaatcccgacggttaactttaacccaaattatgtctatggtggaccaatcttaaaagtggtccacc 413  Q
    ||||| ||||||||||||| ||||| ||||||   ||  |||||||||||||||||| ||||||||| |||||||    
T  23397373 ttgccaaataaatcccgaccgttaaatttaacttcaa--atgtctatggtggaccaaccttaaaagtagtccacc 23397301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 238 - 416
Target Start/End: Complemental strand, 5187742 - 5187564
Alignment:
Q  238 taggcttattagatccgttggtccctcaattaatctccatttttcattttggtctcacaattgataaaaagtaccttttggtcccttagattttcctccg 337  Q
    ||||||||||||||   ||||||||| | ||||| ||   |||||||||||||| || |||| |||||||   | |||| || |||||  ||||  ||||    
T  5187742 taggcttattagattgtttggtcccttatttaatttcatgttttcattttggtcccataattaataaaaatggcgttttagttccttacctttttgtccg 5187643  T
Q  338 tttgccgaataaatcccgacggttaactttaacccaaattatgtctatggtggaccaatcttaaaagtggtccaccata 416  Q
    |||||| ||||||||| ||||||||| ||||||||||||  ||||||| ||||||||| |||||||||||| |||||||    
T  5187642 tttgccaaataaatcctgacggttaagtttaacccaaatgttgtctatagtggaccaaccttaaaagtggttcaccata 5187564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 239 - 351
Target Start/End: Complemental strand, 15730149 - 15730036
Alignment:
Q  239 aggcttattagatccgttggtccctcaattaatctccatttttcattttggtctcacaattgat-aaaaagtaccttttggtcccttagattttcctccg 337  Q
    ||||||||||||| | ||||||||||||||||| ||||||||||||||||||| ||||||| || ||||| ||| ||||||||||| |  ||||| ||||    
T  15730149 aggcttattagattcattggtccctcaattaatttccatttttcattttggtcccacaattaataaaaaaatacattttggtccctcactttttcttccg 15730050  T
Q  338 tttgccgaataaat 351  Q
    |||||  |||||||    
T  15730049 tttgctaaataaat 15730036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 278 - 417
Target Start/End: Complemental strand, 7311804 - 7311666
Alignment:
Q  278 ttttcattttggtctcacaattgataaaaagtaccttttggtcccttagattttcctccgtttgccgaataaatcccgacggttaactttaacccaaatt 377  Q
    ||||||||||| || ||||||| |||||  ||||||||||||||||||  ||||  ||  |||||| |||||||||  || ||||| ||||| ||||||     
T  7311804 ttttcattttgatcccacaattaataaac-gtaccttttggtcccttacttttttatctatttgccaaataaatcctcacagttaagtttaatccaaatg 7311706  T
Q  378 atgtctatggtggaccaatcttaaaagtggtccaccataa 417  Q
    |||||||||||| ||||| ||||| |||||||||||||||    
T  7311705 atgtctatggtgaaccaaccttaagagtggtccaccataa 7311666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 235 - 416
Target Start/End: Original strand, 23392207 - 23392388
Alignment:
Q  235 ttttaggcttattagatccgttggtccctcaattaatctccatttttcattttggtctcacaattgataaaaagtaccttttggtcccttagattttcct 334  Q
    ||||||||||||||||||  ||||||||| | ||||| ||   |||||||||||||| ||||||| |||||||   | |||  |||||| |  |||||||    
T  23392207 ttttaggcttattagatcatttggtcccttatttaatttcgtgttttcattttggtcccacaattaataaaaatggcgtttaagtccctcaccttttcct 23392306  T
Q  335 ccgtttgccgaataaatcccgacggttaactttaaccc-aaattatgtctatggtggaccaatcttaaaagtggtccaccata 416  Q
    ||||||||| |||||||||  |  ||||| |||||||| |||| ||| ||| |||||| ||| ||||||||||||||||||||    
T  23392307 ccgtttgccaaataaatcctaaatgttaagtttaaccccaaatgatg-ctaaggtggatcaaccttaaaagtggtccaccata 23392388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 238 - 370
Target Start/End: Complemental strand, 17839259 - 17839127
Alignment:
Q  238 taggcttattagatccgttggtccctcaattaatctccatttttcattttggtctcacaattgataaaaagtaccttttggtcccttagattttcctccg 337  Q
    |||||||||||||||  ||||||||| | ||||| ||   |||||||||||||| ||||||| |||||||   | |||| |||||| |  ||||||||||    
T  17839259 taggcttattagatcgtttggtcccttatttaatttcttgttttcattttggtcccacaattaataaaaatggcgttttagtccctcaccttttcctccg 17839160  T
Q  338 tttgccgaataaatcccgacggttaactttaac 370  Q
    |||||| ||||||||||||| ||||| ||||||    
T  17839159 tttgccaaataaatcccgaccgttaattttaac 17839127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 234 - 370
Target Start/End: Original strand, 5186560 - 5186696
Alignment:
Q  234 tttttaggcttattagatccgttggtccctcaattaatctccatttttcattttggtctcacaattgataaaaagtaccttttggtcccttagattttcc 333  Q
    |||||||||||||||||||  ||| ||||| | ||||| ||   |||||||||||||| ||||||| ||||||   || ||||  ||| | |  ||||||    
T  5186560 tttttaggcttattagatcatttgatcccttatttaatttcatgttttcattttggtcacacaattaataaaagtgacgttttaatccatcatcttttcc 5186659  T
Q  334 tccgtttgccgaataaatcccgacggttaactttaac 370  Q
    |||||||||| ||||||||||||| ||||||||||||    
T  5186660 tccgtttgccaaataaatcccgaccgttaactttaac 5186696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 238 - 416
Target Start/End: Complemental strand, 29381850 - 29381672
Alignment:
Q  238 taggcttattagatccgttggtccctcaattaatctccatttttcattttggtctcacaattgataaaaagtaccttttggtcccttagattttcctccg 337  Q
    |||||||||||||||  ||||||||| | ||||| ||   ||||||||||| || ||||||| |||||||  || |||| |||| | |  ||||||||||    
T  29381850 taggcttattagatcgtttggtcccttatttaatttcttattttcattttgatcccacaattaataaaaatgacgttttagtccttcatcttttcctccg 29381751  T
Q  338 tttgccgaataaatcccgacggttaactttaa-cccaaattatgtctatggtggaccaatcttaaaagtggtccaccata 416  Q
    ||| || ||||||| || || ||||| ||||| ||||||| |||||| |||||||| || ||||| |||| |||||||||    
T  29381750 tttaccaaataaat-ccaacagttaagtttaaccccaaatgatgtctgtggtggacaaaccttaagagtgatccaccata 29381672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 231 - 416
Target Start/End: Original strand, 17837605 - 17837790
Alignment:
Q  231 tattttttaggcttattagatccgttggtccctcaattaatctccatttttcattttggtctcacaattgataaaaagtaccttttggtcccttagattt 330  Q
    |||||||| |||||||||||||  ||||||||| | ||||| |    |||||||||||||  ||||||| |||||||   | |||| |||||| |  |||    
T  17837605 tatttttttggcttattagatcgtttggtcccttatttaatttattgttttcattttggttccacaattaataaaaatggcgttttagtccctcatcttt 17837704  T
Q  331 tcctccgtttgccgaataaatcccgacggttaactttaaccc-aaattatgtctatggtggaccaatcttaaaagtggtccaccata 416  Q
    || ||||||| || |||||||||  || ||||| |||||||| |||| ||||||||||||||| ||  |||| ||||||||||||||    
T  17837705 tcttccgtttaccaaataaatcca-acagttaagtttaaccccaaatgatgtctatggtggacaaacattaagagtggtccaccata 17837790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 240 - 370
Target Start/End: Original strand, 232174 - 232303
Alignment:
Q  240 ggcttattagatccgttggtccctcaattaatctccatttttcattttggtctcacaattgataaaaagtaccttttggtcccttagattttcctccgtt 339  Q
    |||||| ||||||| ||||||||| || |||| || |||||||||||||||| || |||| ||||||   || |||| |||||| |  ||||||||||||    
T  232174 ggcttaatagatccattggtcccttaaataatttcaatttttcattttggtcccataattaataaaa--cacgttttagtccctcactttttcctccgtt 232271  T
Q  340 tgccgaataaatccc-gacggttaactttaac 370  Q
    |||| ||||||||||  || ||||||||||||    
T  232272 tgccaaataaatcccaaactgttaactttaac 232303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 240 - 411
Target Start/End: Original strand, 29380189 - 29380358
Alignment:
Q  240 ggcttattagatccgttggtccctcaattaatctccatttttcattttggtctcacaattgataaaaagtaccttttggtcccttagattttcctccgtt 339  Q
    |||||||||||||  ||||||||| | ||||| ||   |||||||||||||| ||||||| | |||||   | |||| |||||| |  ||||| ||||||    
T  29380189 ggcttattagatcatttggtcccttatttaatttcttgttttcattttggtcccacaattaacaaaaatggcgttttagtccctcaccttttcttccgtt 29380288  T
Q  340 tgccgaataaatcccgacggttaactttaacccaaattatgtctatggtggaccaatcttaaaagtggtcca 411  Q
    |||| ||||||||||||| ||||| ||||||   ||  |||| ||||||||| ||| ||||||||| |||||    
T  29380289 tgccaaataaatcccgaccgttaattttaacttcaa--atgtatatggtggatcaaccttaaaagtagtcca 29380358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 239 - 417
Target Start/End: Complemental strand, 18346869 - 18346691
Alignment:
Q  239 aggcttattagatccgttggtccctcaattaatctccatttttcattttggtctcacaattgataaaaagtaccttttggtcccttagattttcctccgt 338  Q
    ||||||||||||||  ||||||||| | ||||| ||   |||||||||||||| ||||||| |||||||   | ||||| ||||| |  |||  ||| ||    
T  18346869 aggcttattagatcatttggtcccttatttaatttcatattttcattttggtcccacaattaataaaaatggcgttttgatccctcacgtttgtctctgt 18346770  T
Q  339 ttgccgaataaatcccgacggttaactttaacc-caaattatgtctatggtggaccaatcttaaaagtggtccaccataa 417  Q
    ||||| ||||||| ||||| ||||| ||||||| ||||| |||| || |||| ||||| ||||| |||||||||| ||||    
T  18346769 ttgccaaataaat-ccgactgttaattttaacctcaaatgatgtttacggtgaaccaaccttaagagtggtccactataa 18346691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 239 - 353
Target Start/End: Complemental strand, 6452630 - 6452516
Alignment:
Q  239 aggcttattagatccgttggtccctcaattaatctccatttttcattttggtctcacaattgataaaaagtaccttttggtcccttagattttcctccgt 338  Q
    ||||||||| ||||| ||||||||  || |||| || | |||||||||||||| || |||| |||||| |||| |||  |||||| |  |||||||||||    
T  6452630 aggcttatttgatccattggtcccctaaataatttcaagttttcattttggtcccataattaataaaacgtacgtttgagtccctcattttttcctccgt 6452531  T
Q  339 ttgccgaataaatcc 353  Q
    ||||| |||||||||    
T  6452530 ttgccaaataaatcc 6452516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 240 - 352
Target Start/End: Original strand, 6701378 - 6701490
Alignment:
Q  240 ggcttattagatccgttggtccctcaattaatctccatttttcattttggtctcacaattgataaaaagtaccttttggtcccttagattttcctccgtt 339  Q
    |||||||||||||  ||||||||| | ||||| ||   |||||||||||||| ||||||| |||||||     |||| |||||| | |||||||||||||    
T  6701378 ggcttattagatcgtttggtcccttatttaatttcatattttcattttggtcccacaattaataaaaatggtattttagtccctcacattttcctccgtt 6701477  T
Q  340 tgccgaataaatc 352  Q
    |||| ||||||||    
T  6701478 tgccaaataaatc 6701490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 239 - 338
Target Start/End: Original strand, 34023883 - 34023982
Alignment:
Q  239 aggcttattagatccgttggtccctcaattaatctccatttttcattttggtctcacaattgataaaaagtaccttttggtcccttagattttcctccgt 338  Q
    ||||||||| ||||   ||||||||||| |||| |  | |||||||||||||  ||||||| |||||| |||||||||||||||| |  |||||||||||    
T  34023883 aggcttatttgatcaaatggtccctcaaataattttaagttttcattttggtaccacaattaataaaacgtaccttttggtccctcaccttttcctccgt 34023982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 278 - 367
Target Start/End: Complemental strand, 34024144 - 34024055
Alignment:
Q  278 ttttcattttggtctcacaattgataaaaagtaccttttggtcccttagattttcctccgtttgccgaataaatcccgacggttaacttt 367  Q
    |||||||||||||| ||||||| |||||| |||| ||||| ||||| |  |||||||||||||| | ||||| |  ||| ||||||||||    
T  34024144 ttttcattttggtcccacaattaataaaatgtacattttgatccctcactttttcctccgtttgtcaaataactttcgatggttaacttt 34024055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 278 - 416
Target Start/End: Original strand, 12669759 - 12669896
Alignment:
Q  278 ttttcattttggtctcacaattgataaaaagtaccttttggtcccttagattttcctccgtttgccgaataaatcccga-cggttaactttaacccaaat 376  Q
    |||| ||||||||||||||||| ||||||   |  |||| |||| | |  |||||||||||||||  |||||||| | | | |||||||||||||  ||     
T  12669759 tttttattttggtctcacaattaataaaactcaagttttagtccgtcactttttcctccgtttgctaaataaatctctaactgttaactttaacctcaa- 12669857  T
Q  377 tatgtctatggtggaccaatcttaaaagtggtccaccata 416  Q
     |||| ||||||||||||| ||||| ||||||||||||||    
T  12669858 -atgtgtatggtggaccaaccttaagagtggtccaccata 12669896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 278 - 411
Target Start/End: Original strand, 7310312 - 7310443
Alignment:
Q  278 ttttcattttggtctcacaattgataaaaagtaccttttggtcccttagattttcctccgtttgccgaataaatcccgacggttaactttaacccaaatt 377  Q
    |||||||||||||| || |||| |||||| |||  |||  |||| | || |||| |||||||| || |||||||| || | ||||| |||||| | ||      
T  7310312 ttttcattttggtcccataattaataaaacgtatgtttaagtccttcaggtttttctccgtttaccaaataaatctcggctgttaagtttaactccaa-- 7310409  T
Q  378 atgtctatggtggaccaatcttaaaagtggtcca 411  Q
    |||||||||||| ||||| ||||||| |||||||    
T  7310410 atgtctatggtgaaccaaccttaaaaatggtcca 7310443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 313 - 416
Target Start/End: Complemental strand, 32507071 - 32506969
Alignment:
Q  313 ttttggtcccttagattttcctccgtttgccgaataaatccc-gacggttaactttaacccaaattatgtctatggtggaccaatcttaaaagtggtcca 411  Q
    |||| |||||| | ||||| ||| ||||||| |||||||||  ||| ||||| |||||||| || |||  |||||||||||||| ||||| ||||||| |    
T  32507071 ttttagtccctcacatttttctcagtttgccaaataaatccttgactgttaagtttaaccccaaatat--ctatggtggaccaaccttaagagtggtcta 32506974  T
Q  412 ccata 416  Q
    |||||    
T  32506973 ccata 32506969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 278 - 354
Target Start/End: Original strand, 2687266 - 2687342
Alignment:
Q  278 ttttcattttggtctcacaattgataaaaagtaccttttggtcccttagattttcctccgtttgccgaataaatccc 354  Q
    ||||||||||| || ||||||| |||||||   | |||| |||| | | ||||||||||||||||| ||||||||||    
T  2687266 ttttcattttgatcccacaattaataaaaatggcgttttagtccttcacattttcctccgtttgccaaataaatccc 2687342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0118 (Bit Score: 59; Significance: 1e-24; HSPs: 2)
Name: scaffold0118
Description:

Target: scaffold0118; HSP #1
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 255 - 416
Target Start/End: Complemental strand, 43678 - 43516
Alignment:
Q  255 ttggtccctcaattaatctccatttttcattttggtctcacaattgataaaaagtaccttttggtcccttagattttcctccgtttgccgaataaatccc 354  Q
    |||||||||||| |||| |  | |||| ||||||||| || |||| |||||| |||  |||  |||||| |  |||||||||||||||| ||||| |||     
T  43678 ttggtccctcaaataattttaagtttttattttggtcccataattaataaaacgtatgtttaagtccctcactttttcctccgtttgccaaataagtcct 43579  T
Q  355 gacggttaactttaacccaaatt-atgtctatggtggaccaatcttaaaagtggtccaccata 416  Q
    ||||||||| |||||||| || | |||||||||||||||||||||||| ||||||||||||||    
T  43578 gacggttaagtttaaccccaagtgatgtctatggtggaccaatcttaagagtggtccaccata 43516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0118; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 293 - 341
Target Start/End: Original strand, 42458 - 42506
Alignment:
Q  293 cacaattgataaaaagtaccttttggtcccttagattttcctccgtttg 341  Q
    ||||||| ||||||||||| ||||||||| | ||||||| |||||||||    
T  42458 cacaattaataaaaagtacgttttggtccttcagatttttctccgtttg 42506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0034 (Bit Score: 49; Significance: 9e-19; HSPs: 2)
Name: scaffold0034
Description:

Target: scaffold0034; HSP #1
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 265 - 416
Target Start/End: Original strand, 108536 - 108687
Alignment:
Q  265 aattaatctccatttttcattttggtctcacaattgataaaaagtaccttttggtcccttagattttcctccgtttgccgaataaatcccgacggttaac 364  Q
    ||||||| |||||||| ||||||| || || |||| |||||| |||| ||||| ||||| |  ||||||||| |||||| |||||||||   | |||||     
T  108536 aattaatttccattttacattttgatcccataattaataaaacgtacgttttgatccctcattttttcctccatttgccaaataaatccttgcagttaag 108635  T
Q  365 tttaaccc-aaattatgtctatggtggaccaatcttaaaagtggtccaccata 416  Q
    |||||||| |||| || | ||||||||||||| ||||||||||||||||||||    
T  108636 tttaaccccaaataatat-tatggtggaccaaccttaaaagtggtccaccata 108687  T

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Target: scaffold0034; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 238 - 403
Target Start/End: Complemental strand, 109865 - 109702
Alignment:
Q  238 taggcttattagatccgttggtccctcaattaatctccatttttcattttggtctcacaattgataaaaagtaccttttggtcccttagattttcctccg 337  Q
    |||||||||| ||| |  |||||||| || |||| || | ||||||||||||||  |||||| |||||| |||| |||| |||||| |  |||| |||      
T  109865 taggcttatttgattcaatggtcccttaaataatttcaagttttcattttggtcctacaattaataaaacgtacattttagtccctcacttttttctcaa 109766  T
Q  338 tttgccgaataaatcccgacggttaactttaacccaaattatgtctatggtggaccaatcttaaaa 403  Q
    |||||| ||| |||||| ||  |||||||||||   ||  |||| ||||||||||||| |||||||    
T  109765 tttgccaaatgaatcccaactattaactttaacttcaa--atgtatatggtggaccaaccttaaaa 109702  T

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Target: scaffold0019 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 234 - 417
Target Start/End: Complemental strand, 63255 - 63073
Alignment:
Q  234 tttttaggcttattagatccgttggtccctcaattaatctccatttttcattttggtctcacaattgataaaaagtaccttttggtcccttagattttcc 333  Q
    |||||||| ||||||||||  |||||||  ||| |||| ||   |||||||||||||| ||||||| ||||| |   | |||| |||||| | ||||| |    
T  63255 tttttaggtttattagatcgtttggtcctccaaataatttcgtgttttcattttggtcccacaattaataaagatggcgttttagtccctcacatttttc 63156  T
Q  334 tccgtttgccgaataaatccc-gacggttaactttaacccaaattatgtctatggtggaccaatcttaaaagtggtccaccataa 417  Q
    |||||||||| |||||||||| ||| ||||| ||||||   ||  ||||||||| |||| ||||||||| | |||||||||||||    
T  63155 tccgtttgccaaataaatccctgactgttaagtttaacttcaa--atgtctatgatggatcaatcttaagaatggtccaccataa 63073  T

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Target: scaffold0472 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0472
Description:

Target: scaffold0472; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 327 - 372
Target Start/End: Complemental strand, 776 - 731
Alignment:
Q  327 attttcctccgtttgccgaataaatcccgacggttaactttaaccc 372  Q
    |||||||||||||||||  |||||||| ||| ||||||||||||||    
T  776 attttcctccgtttgccatataaatcctgactgttaactttaaccc 731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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